SynAffix B.V.

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IPC Class
A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment 57
A61P 35/00 - Antineoplastic agents 35
C07K 16/32 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against translation products from oncogenes 20
A61K 47/54 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic compound 15
C07K 16/28 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants 11
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NICE Class
44 - Medical, veterinary, hygienic and cosmetic services; agriculture, horticulture and forestry services 17
01 - Chemical and biological materials for industrial, scientific and agricultural use 16
42 - Scientific, technological and industrial services, research and design 16
05 - Pharmaceutical, veterinary and sanitary products 10
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1.

Antibody-conjugates for targeting of tumours expressing nectin-4

      
Application Number 18849558
Status Pending
Filing Date 2023-03-23
First Publication Date 2025-06-26
Owner Synaffix B.V. (Netherlands)
Inventor
  • Lelieveldt, Lianne
  • Van Geel, Remon
  • Van Berkel, Sander Sebastiaan
  • Van Delft, Floris Louis

Abstract

The present invention concerns antibody-conjugates which are especially suitable for the targeting of nectin-4-expressing cells, in particular tumour cells. The antibody-conjugates according to the invention have structure (1): The present invention concerns antibody-conjugates which are especially suitable for the targeting of nectin-4-expressing cells, in particular tumour cells. The antibody-conjugates according to the invention have structure (1): AB-[(L6)b-{Z-L-D}x]y   (1) The present invention concerns antibody-conjugates which are especially suitable for the targeting of nectin-4-expressing cells, in particular tumour cells. The antibody-conjugates according to the invention have structure (1): AB-[(L6)b-{Z-L-D}x]y   (1) Herein, AB is an antibody capable of targeting nectin-4-expressing tumours; L is a linker that links Z to D; Z is a connecting group; L6 is -GlcNAc(Fuc)w-(G)j-S-(L7)w′-, wherein G is a monosaccharide, j is an integer in the range of 0-10, S is a sugar or a sugar derivative, GlcNAc is N-acetylglucosamine and Fuc is fucose, w is 0 or 1, w′ is 0, 1 or 2 and L7 is —N(H)C(O)CH2—, —N(H)C(O)CF2— or —CH2—; D is selected from the group consisting of anthracyclines, camptothecins, tubulysins, enediynes, amanitins, duocarmycins, maytansinoids, auristatins, eribulins, BCL-XL inhibitors, hemiasterlins, KSP inhibitors, TLR agonists, indolinobenzodiazepine dimers or pyrrolobenzodiazepine dimers (PBDs), and analogues or prodrugs thereof; b is 0 or 1; x is 1 or 2; and y is 1, 2, 3 or 4. The invention further concerns a method for preparing the antibody-conjugates of structure (1) and application of the antibody-conjugates of structure (1).

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61P 35/00 - Antineoplastic agents

2.

MODIFIED ANTIBODY, ANTIBODY-CONJUGATE AND PROCESS FOR THE PREPARATION THEREOF

      
Application Number 18974659
Status Pending
Filing Date 2024-12-09
First Publication Date 2025-06-05
Owner SynAffix B.V. (Netherlands)
Inventor
  • Van Delft, Floris Louis
  • Van Geel, Remon
  • Wijdeven, Maria Antonia

Abstract

The present invention relates to an antibody comprising a GlcNAc-S(A)x substituent, wherein S(A)x is a sugar derivative comprising x functional groups A wherein A is independently selected from the group consisting of an azido group, a keto group and an alkynyl group and x is 1, 2, 3 or 4, wherein said GlcNAc-S(A)x substituent is bonded to the antibody via C1 of the N-acetylglucosamine of said GlcNAc-S(A)x substituent, and wherein said N-acetylglucosamine is optionally fucosylated. The present invention relates to an antibody comprising a GlcNAc-S(A)x substituent, wherein S(A)x is a sugar derivative comprising x functional groups A wherein A is independently selected from the group consisting of an azido group, a keto group and an alkynyl group and x is 1, 2, 3 or 4, wherein said GlcNAc-S(A)x substituent is bonded to the antibody via C1 of the N-acetylglucosamine of said GlcNAc-S(A)x substituent, and wherein said N-acetylglucosamine is optionally fucosylated. The invention also relates to an antibody-conjugate, in particular to an antibody-conjugate according to the Formula (20) or (20b), wherein AB is an antibody, S is a sugar or a sugar derivative, D is a molecule of interest, and wherein said N-acetylglucosamine is optionally fucosylated (b is 0 or 1). The present invention relates to an antibody comprising a GlcNAc-S(A)x substituent, wherein S(A)x is a sugar derivative comprising x functional groups A wherein A is independently selected from the group consisting of an azido group, a keto group and an alkynyl group and x is 1, 2, 3 or 4, wherein said GlcNAc-S(A)x substituent is bonded to the antibody via C1 of the N-acetylglucosamine of said GlcNAc-S(A)x substituent, and wherein said N-acetylglucosamine is optionally fucosylated. The invention also relates to an antibody-conjugate, in particular to an antibody-conjugate according to the Formula (20) or (20b), wherein AB is an antibody, S is a sugar or a sugar derivative, D is a molecule of interest, and wherein said N-acetylglucosamine is optionally fucosylated (b is 0 or 1). The present invention relates to an antibody comprising a GlcNAc-S(A)x substituent, wherein S(A)x is a sugar derivative comprising x functional groups A wherein A is independently selected from the group consisting of an azido group, a keto group and an alkynyl group and x is 1, 2, 3 or 4, wherein said GlcNAc-S(A)x substituent is bonded to the antibody via C1 of the N-acetylglucosamine of said GlcNAc-S(A)x substituent, and wherein said N-acetylglucosamine is optionally fucosylated. The invention also relates to an antibody-conjugate, in particular to an antibody-conjugate according to the Formula (20) or (20b), wherein AB is an antibody, S is a sugar or a sugar derivative, D is a molecule of interest, and wherein said N-acetylglucosamine is optionally fucosylated (b is 0 or 1). The invention further relates to a process for the preparation of a modified antibody, to a process for the preparation of an antibody-conjugate, and to said antibody-conjugate for use as a medicament. The present invention relates to an antibody comprising a GlcNAc-S(A)x substituent, wherein S(A)x is a sugar derivative comprising x functional groups A wherein A is independently selected from the group consisting of an azido group, a keto group and an alkynyl group and x is 1, 2, 3 or 4, wherein said GlcNAc-S(A)x substituent is bonded to the antibody via C1 of the N-acetylglucosamine of said GlcNAc-S(A)x substituent, and wherein said N-acetylglucosamine is optionally fucosylated. The invention also relates to an antibody-conjugate, in particular to an antibody-conjugate according to the Formula (20) or (20b), wherein AB is an antibody, S is a sugar or a sugar derivative, D is a molecule of interest, and wherein said N-acetylglucosamine is optionally fucosylated (b is 0 or 1). The invention further relates to a process for the preparation of a modified antibody, to a process for the preparation of an antibody-conjugate, and to said antibody-conjugate for use as a medicament. In addition, the invention relates to a kit of parts comprising an azide-modified antibody and a linker-conjugate, wherein said linker-conjugate comprises a (hetero)cycloalkynyl group and one or more molecules of interest.

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61K 39/00 - Medicinal preparations containing antigens or antibodies
  • A61K 47/61 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic macromolecular compound, e.g. an oligomeric, polymeric or dendrimeric molecule the organic macromolecular compound being a polysaccharide or a derivative thereof
  • A61K 47/65 - Peptidic linkers, binders or spacers, e.g. peptidic enzyme-labile linkers
  • C07K 16/22 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against growth factors
  • C07K 16/28 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
  • C07K 16/30 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants from tumour cells
  • C07K 16/32 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against translation products from oncogenes
  • C12P 21/02 - Preparation of peptides or proteins having a known sequence of two or more amino acids, e.g. glutathione

3.

ANTIBODY-CONJUGATES FOR TARGETING OF TUMOURS EXPRESSING PTK7

      
Application Number 18892253
Status Pending
Filing Date 2024-09-20
First Publication Date 2025-03-27
Owner Synaffix B.V. (Netherlands)
Inventor
  • Lelieveldt, Lianne
  • Van Geel, Remon
  • Van Berkel, Sander Sebastiaan
  • Van Delft, Floris Louis

Abstract

The present invention concerns antibody-conjugates which are especially suitable for the targeting of PTK7-expressing cells, in particular tumour cells. The antibody-conjugates according to the invention have structure (1): The present invention concerns antibody-conjugates which are especially suitable for the targeting of PTK7-expressing cells, in particular tumour cells. The antibody-conjugates according to the invention have structure (1): AB-[(L6)b-{Z-L-D}x]y  1 The present invention concerns antibody-conjugates which are especially suitable for the targeting of PTK7-expressing cells, in particular tumour cells. The antibody-conjugates according to the invention have structure (1): AB-[(L6)b-{Z-L-D}x]y  1 Herein, AB is an antibody capable of targeting PTK7-expressing tumours; L is a linker that links Z to D; Z is a connecting group; L6 is -GlcNAc(Fuc)w-(G)j-S-(L7)w-, wherein G is a monosaccharide, j is an integer in the range of 0-10, S is a sugar or a sugar derivative, GlcNAc is N-acetylglucosamine and Fuc is fucose, w is 0 or 1, w′ is 0, 1 or 2 and L7 is —N(H)C(O)CH2—, —N(H)C(O)CF2— or —CH2—; D is selected from the group consisting of anthracyclines, camptothecins, tubulysins, enediynes, amanitins, duocarmycins, maytansinoids, auristatins, eribulins, BCL-XL inhibitors, hemiasterlins, KSP inhibitors, TLR agonists, indolinobenzodiazepine dimers or pyrrolobenzodiazepine dimers (PBDs), and analogues or prodrugs thereof; b is 0 or 1; x is 1 or 2; and y is 1, 2, 3 or 4. The invention further concerns a method for preparing the antibody-conjugates of structure (1) and application of the antibody-conjugates of structure (1).

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61P 35/00 - Antineoplastic agents
  • C07K 16/40 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against enzymes

4.

ANTIBODY-CONJUGATES FOR TARGETING OF TUMOURS EXPRESSING TROP-2

      
Application Number 18892270
Status Pending
Filing Date 2024-09-20
First Publication Date 2025-03-20
Owner Synaffix B.V. (Netherlands)
Inventor
  • Wijdeven, Maria Antonia
  • Van Geel, Remon
  • Van Berkel, Sander Sebastiaan
  • Van Delft, Floris Louis
  • Lelieveldt, Lianne

Abstract

The present invention concerns antibody-conjugates which are especially suitable for the targeting of Trop-2-expressing cells, in particular tumour cells. The antibody-conjugates according to the invention have structure (1): The present invention concerns antibody-conjugates which are especially suitable for the targeting of Trop-2-expressing cells, in particular tumour cells. The antibody-conjugates according to the invention have structure (1): AB-[(L6)b-{Z-L-D}x]y   (1) The present invention concerns antibody-conjugates which are especially suitable for the targeting of Trop-2-expressing cells, in particular tumour cells. The antibody-conjugates according to the invention have structure (1): AB-[(L6)b-{Z-L-D}x]y   (1) Herein, AB is an antibody capable of targeting Trop-2-expressing tumours; L is a linker that links Z to D; Z is a connecting group; L6 is -GlcNAc(Fuc)w-(G)j-S-(L7)w-, wherein G is a monosaccharide, j is an integer in the range of 0-10, S is a sugar or a sugar derivative, GlcNAc is N-acetylglucosamine and Fuc is fucose, w is 0 or 1, w′ is 0, 1 or 2 and L7 is —N(H)C(O)CH2—, —N(H)C(O)CF2— or —CH2—; D is exatecan; b is 0 or 1; x is 1 or 2; and y is 1, 2, 3 or 4. The invention further concerns a method for preparing the antibody-conjugates of structure (1) and application of the antibody-conjugates of structure (1).

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61P 35/00 - Antineoplastic agents

5.

ANTIBODY-CONJUGATES FOR TARGETING OF TUMOURS EXPRESSING CARCINOEMBYRONIC ANTIGEN

      
Application Number 18892256
Status Pending
Filing Date 2024-09-20
First Publication Date 2025-03-13
Owner Synaffix B.V. (Netherlands)
Inventor
  • Lelieveldt, Lianne
  • Van Geel, Remon
  • Van Berkel, Sander Sebastiaan
  • Van Delft, Floris Louis

Abstract

The present invention concerns antibody-conjugates which are especially suitable for the targeting of CEA-expressing cells, in particular tumour cells. The antibody-conjugates according to the invention have structure (1): The present invention concerns antibody-conjugates which are especially suitable for the targeting of CEA-expressing cells, in particular tumour cells. The antibody-conjugates according to the invention have structure (1): AB-[(L6)b-{Z-L-D}x]y   (1) The present invention concerns antibody-conjugates which are especially suitable for the targeting of CEA-expressing cells, in particular tumour cells. The antibody-conjugates according to the invention have structure (1): AB-[(L6)b-{Z-L-D}x]y   (1) Herein, AB is an antibody capable of targeting CEA-expressing tumours; L is a linker that links Z to D; Z is a connecting group; L6 is -GlcNAc(Fuc)w-(G)j-S-(L7)w′-, wherein G is a monosaccharide, j is an integer in the range of 0-10, S is a sugar or a sugar derivative, GlcNAc is N-acetylglucosamine and Fuc is fucose, w is 0 or 1, w′ is 0, 1 or 2 and L7 is —N(H)C(O)CH2—, —N(H)C(O)CF2— or —CH2—; D is selected from the group consisting of anthracyclines, camptothecins, tubulysins, enediynes, amanitins, duocarmycins, maytansinoids, auristatins, eribulins, BCL-XL inhibitors, hemiasterlins, KSP inhibitors, TLR agonists, indolinobenzodiazepine dimers or pyrrolobenzodiazepine dimers (PBDs), and analogues or prodrugs thereof; b is 0 or 1; x is 1 or 2; and y is 1, 2, 3 or 4. The invention further concerns a method for preparing the antibody-conjugates of structure (1) and application of the antibody-conjugates of structure (1).

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61P 35/00 - Antineoplastic agents
  • C07K 16/30 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants from tumour cells

6.

FUSED CYCLOOCTYNE COMPOUNDS AND THEIR USE IN METAL-FREE CLICK REACTIONS

      
Application Number 18955142
Status Pending
Filing Date 2024-11-21
First Publication Date 2025-03-13
Owner Synaffix B.V. (Netherlands)
Inventor
  • Van Delft, Floris Louis
  • Rutjes, Floris Petrus Johannes Theodorus
  • Dommerholt, Frederik Jan

Abstract

The invention relates to fused cyclooctyne compounds, and to a method for their preparation. The invention also relates to a conjugate wherein a fused cyclooctyne compound according to the invention is conjugated to a label, and to the use of these conjugates in bioorthogonal labeling, imaging and/or modification, such as for example surface modification, of a target molecule. The invention further relates to a method for the modification of a target molecule, wherein a conjugate according to the invention is reacted with a compound comprising a 1,3-dipole or a 1,3-(hetero)diene.

IPC Classes  ?

  • C07C 33/16 - Alcohols containing rings other than six-membered aromatic rings containing rings with more than six ring members
  • A61K 47/54 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic compound
  • A61K 49/00 - Preparations for testing in vivo
  • C07C 29/147 - Preparation of compounds having hydroxy or O-metal groups bound to a carbon atom not belonging to a six-membered aromatic ring by reduction of an oxygen-containing functional group of C=O containing groups, e.g. —COOH of carboxylic acids or derivatives thereof
  • C07C 29/58 - Preparation of compounds having hydroxy or O-metal groups bound to a carbon atom not belonging to a six-membered aromatic ring by elimination of halogen, e.g. by hydrogenolysis, splitting-off
  • C07C 29/62 - Preparation of compounds having hydroxy or O-metal groups bound to a carbon atom not belonging to a six-membered aromatic ring by introduction of halogenPreparation of compounds having hydroxy or O-metal groups bound to a carbon atom not belonging to a six-membered aromatic ring by substitution of halogen atoms by other halogen atoms
  • C07C 62/30 - Unsaturated compounds
  • C07C 67/347 - Preparation of carboxylic acid esters by modifying the acid moiety of the ester, such modification not being an introduction of an ester group by isomerisationPreparation of carboxylic acid esters by modifying the acid moiety of the ester, such modification not being an introduction of an ester group by change of size of the carbon skeleton by increase in the number of carbon atoms by addition to unsaturated carbon-to-carbon bonds
  • C07C 269/06 - Preparation of derivatives of carbamic acid, i.e. compounds containing any of the groups the nitrogen atom not being part of nitro or nitroso groups by reactions not involving the formation of carbamate groups
  • C07C 271/12 - Esters of carbamic acids having oxygen atoms of carbamate groups bound to acyclic carbon atoms with the nitrogen atoms of the carbamate groups bound to hydrogen atoms or to acyclic carbon atoms to hydrogen atoms or to carbon atoms of unsubstituted hydrocarbon radicals
  • C07C 271/20 - Esters of carbamic acids having oxygen atoms of carbamate groups bound to acyclic carbon atoms with the nitrogen atoms of the carbamate groups bound to hydrogen atoms or to acyclic carbon atoms to carbon atoms of hydrocarbon radicals substituted by nitrogen atoms not being part of nitro or nitroso groups
  • C07D 311/82 - Xanthenes
  • C07D 495/04 - Ortho-condensed systems
  • C07K 14/47 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from animalsPeptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from humans from vertebrates from mammals
  • G01N 21/64 - FluorescencePhosphorescence
  • G01N 33/532 - Production of labelled immunochemicals
  • G01N 33/58 - Chemical analysis of biological material, e.g. blood, urineTesting involving biospecific ligand binding methodsImmunological testing involving labelled substances

7.

BIOCONJUGATES CONTAINING SULFAMIDE LINKERS FOR USE IN TREATMENT

      
Application Number 18609949
Status Pending
Filing Date 2024-03-19
First Publication Date 2024-12-05
Owner Synaffix B.V. (Netherlands)
Inventor
  • Verkade, Jorge Merijn Mathieu
  • Wijdeven, Maria Antonia
  • Van De Sande, Petrus Josephus Jacobus Maria
  • Van Geel, Remon
  • Van Delft, Floris Louis
  • Van Berkel, Sander Sebastiaan

Abstract

The present invention is based on the surprising finding that the linker employed in a bioconjugate, such as an anti-body-drug conjugate, is not therapeutically inert but has an effect on the therapeutic index of the bioconjugate. The present invention thus concerns a method for increasing the therapeutic index of a bioconjugate and the bioconjugates for use in treatment, in particular cancer. The bioconjugates according to the invention have a sulfamide linker comprising a group according to formula (1): The present invention is based on the surprising finding that the linker employed in a bioconjugate, such as an anti-body-drug conjugate, is not therapeutically inert but has an effect on the therapeutic index of the bioconjugate. The present invention thus concerns a method for increasing the therapeutic index of a bioconjugate and the bioconjugates for use in treatment, in particular cancer. The bioconjugates according to the invention have a sulfamide linker comprising a group according to formula (1):

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61K 47/54 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic compound
  • A61K 47/66 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being a protein, peptide or polyamino acid the modifying agent being a pre-targeting system involving a peptide or protein for targeting specific cells
  • A61P 35/00 - Antineoplastic agents
  • C07K 14/435 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from animalsPeptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from humans

8.

CLEAVABLE IMMUNE CELL ENGAGERS

      
Application Number EP2024060441
Publication Number 2024/218162
Status In Force
Filing Date 2024-04-17
Publication Date 2024-10-24
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Geel, Remon
  • Van Berkel, Sander Sebastiaan
  • Van Delft, Floris Louis

Abstract

xx containing x reactive moieties F, wherein x is an integer in the range 1 – 10, and an immune cell-engaging polypeptide containing one or two reactive moieties Q, wherein the antibody is specific for a tumour cell and the immune cell-engaging polypeptide is specific for an immune cell, wherein the reaction forms a covalent linkage between the functionalized antibody and the immune cell-engaging polypeptide by reaction of Q with F. The invention further concerns the antibody-cytokine conjugate obtainable by the process according to the invention and medical uses thereof.

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61P 35/00 - Antineoplastic agents
  • A61P 37/00 - Drugs for immunological or allergic disorders
  • C07K 14/54 - Interleukins [IL]
  • C07K 16/28 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
  • C07K 16/32 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against translation products from oncogenes
  • A61K 39/00 - Medicinal preparations containing antigens or antibodies

9.

STABLE 4-ISOXAZOLINE CONJUGATES

      
Application Number EP2024060444
Publication Number 2024/218164
Status In Force
Filing Date 2024-04-17
Publication Date 2024-10-24
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Post, Elias
  • Van Geel, Remon
  • Van Berkel, Sander Sebastiaan
  • Van Delft, Floris Louis

Abstract

The invention concerns nitrones that are capable of forming 4-isoxazoline compounds by strain- promoted alkyne-nitrone cycloaddition (SPANC), which have improved stability. The 4-isoxazoline compounds do not disintegrate by rearrangement into two molecules. As such, the nitrones according to the present invention are suitable for preparing bioconjugates by SPANC reaction. The invention further concerns the thus obtained bioconjugates, as well as the application thereof in targeting cells and treating cancer.

IPC Classes  ?

  • A61P 35/00 - Antineoplastic agents
  • A61K 47/64 - Drug-peptide, drug-protein or drug-polyamino acid conjugates, i.e. the modifying agent being a peptide, protein or polyamino acid which is covalently bonded or complexed to a therapeutically active agent
  • A61K 39/00 - Medicinal preparations containing antigens or antibodies
  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61P 37/00 - Drugs for immunological or allergic disorders
  • C07K 14/54 - Interleukins [IL]
  • C07K 16/28 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
  • C07K 16/32 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against translation products from oncogenes

10.

GlycoConnect

      
Application Number 1803622
Status Registered
Filing Date 2024-05-24
Registration Date 2024-05-24
Owner Synaffix B.V. (Netherlands)
NICE Classes  ?
  • 01 - Chemical and biological materials for industrial, scientific and agricultural use
  • 42 - Scientific, technological and industrial services, research and design
  • 44 - Medical, veterinary, hygienic and cosmetic services; agriculture, horticulture and forestry services

Goods & Services

Reagents and bioactive compounds for industrial and scientific use. Chemical analysis, research and/or enzymatic modification of proteins. Medical analysis for the diagnosis and treatment of a condition in patients.

11.

HOMOGENEOUS ANTIBODY-CONJUGATES WITH HIGH PAYLOAD LOADING

      
Application Number EP2024052430
Publication Number 2024/160926
Status In Force
Filing Date 2024-01-31
Publication Date 2024-08-08
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Post, Elias
  • Van Geel, Remon
  • Lelieveldt, Lianne
  • Van Berkel, Sander Sebastiaan
  • Van Delft, Floris Louis

Abstract

The invention concerns homogenous antibody-conjugates with high payload loading (high DAR) obtained by site-specific conjugation to a single antibody N-glycan. The conjugates according to the invention are homogeneous, i.e. have a DAR at or close to the theoretical DAR with a narrow distribution, and do not require any genetic modification of the antibody. The invention further concerns a modular, non-genetic preparation method for such conjugates, involving three simple steps and starting from any antibody. These steps are (a) enzymatic remodeling of the glycan to give an antibody functionalized with two or four click probes per antibody, (b) strain-promoted cycloaddition with a multivalent, bifunctional reagent comprising one cyclic alkyne and at least two click probes that are not reactive towards the cyclic alkyne, and (c) inverse electron-demand Diels- Alder cycloaddition of the click probes with branched linker-drug constructs comprising one cyclic alkyne or strained alkene, connected to one or more payloads preferably connected through a cleavable linker. The resulting conjugates, with DAR6 or higher, are rapidly generated with high homogeneity and with surprising stability. In addition, HIC profiles of the resulting ADCs indicate small relative retention time and therefore show high potential in the targeting of tumour cells and/or the treatment of cancer.

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61P 35/00 - Antineoplastic agents

12.

ANTIBODY-DRUG CONJUGATES WITH MASKED PBD DIMERS

      
Application Number EP2023087484
Publication Number 2024/133815
Status In Force
Filing Date 2023-12-21
Publication Date 2024-06-27
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Popal, Sorraya
  • Hoogenboom, Jorin
  • Van Geel, Remon
  • Van Berkel, Sander Sebastiaan
  • Van Delft, Floris Louis
  • Verhagen, Mick Petrus Arnoldus

Abstract

The inventions concerns conjugates of masked PBD dimers, which are suitable in the treatment of cancers. The inventors found that coupling a masked PBD dimer via a glycan of a cell-binding agent increases the efficiency and tolerability of a PBD-payload. These findings allow for more effective cancer treatment with less adverse side-effects. The invention therefore concerns a conjugate of structure (1): wherein AB is a cell-binding agent; x is 1 or 2; y is 1 or 2; D is a masked PBD dimer payload; and L is a linker that connects AB with D.

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61P 35/00 - Antineoplastic agents

13.

ENDO-BICYCLONONENE

      
Application Number EP2023084285
Publication Number 2024/121123
Status In Force
Filing Date 2023-12-05
Publication Date 2024-06-13
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Schaik, Arnoldus Jacobus
  • Verkade, Jorge Merijn Mathieu
  • Van Berkel, Sander Sebastiaan
  • Van Delft, Floris Louis

Abstract

ZexoendoZendoendoexoZZ-4-ene of structure (1) with a base and an alcohol of formula R4endoexoexo-substituted carboxylic acid (3).

IPC Classes  ?

  • C07C 69/753 - Esters of carboxylic acids having an esterified carboxyl group bound to a carbon atom of a ring other than a six-membered aromatic ring of polycyclic acids
  • C07C 67/03 - Preparation of carboxylic acid esters by reacting an ester group with a hydroxy group
  • C07C 67/58 - SeparationPurificationStabilisationUse of additives by liquid-liquid treatment
  • C07C 29/147 - Preparation of compounds having hydroxy or O-metal groups bound to a carbon atom not belonging to a six-membered aromatic ring by reduction of an oxygen-containing functional group of C=O containing groups, e.g. —COOH of carboxylic acids or derivatives thereof
  • C07C 33/16 - Alcohols containing rings other than six-membered aromatic rings containing rings with more than six ring members
  • C07C 29/62 - Preparation of compounds having hydroxy or O-metal groups bound to a carbon atom not belonging to a six-membered aromatic ring by introduction of halogenPreparation of compounds having hydroxy or O-metal groups bound to a carbon atom not belonging to a six-membered aromatic ring by substitution of halogen atoms by other halogen atoms
  • C07C 29/56 - Preparation of compounds having hydroxy or O-metal groups bound to a carbon atom not belonging to a six-membered aromatic ring by isomerisation
  • C07C 29/58 - Preparation of compounds having hydroxy or O-metal groups bound to a carbon atom not belonging to a six-membered aromatic ring by elimination of halogen, e.g. by hydrogenolysis, splitting-off

14.

GLYCOCONNECT

      
Serial Number 79401790
Status Registered
Filing Date 2024-05-24
Registration Date 2025-03-18
Owner Synaffix B.V. (Netherlands)
NICE Classes  ?
  • 01 - Chemical and biological materials for industrial, scientific and agricultural use
  • 42 - Scientific, technological and industrial services, research and design
  • 44 - Medical, veterinary, hygienic and cosmetic services; agriculture, horticulture and forestry services

Goods & Services

Reagents and bioactive compounds being cells for industrial and scientific use Chemical analysis, research and chemical enzymatic modification of proteins for scientific research purposes Medical analysis for the diagnosis and treatment of cancer in patients

15.

GlycoConnect

      
Application Number 019025601
Status Registered
Filing Date 2024-05-10
Registration Date 2024-10-19
Owner Synaffix B.V. (Netherlands)
NICE Classes  ?
  • 01 - Chemical and biological materials for industrial, scientific and agricultural use
  • 42 - Scientific, technological and industrial services, research and design
  • 44 - Medical, veterinary, hygienic and cosmetic services; agriculture, horticulture and forestry services

Goods & Services

Reagents and bioactive compounds for industrial and scientific use. Chemical and/or enzymatic modification of proteins in the development of antibody-drug conjugates; chemical and enzymatic modification of proteins (chemical engineering and biological development services). Medical analysis for the diagnosis and treatment of a condition in patients.

16.

ANTHRACYCLINS AND CONJUGATES THEREOF

      
Application Number EP2023072484
Publication Number 2024/038065
Status In Force
Filing Date 2023-08-15
Publication Date 2024-02-22
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Delft, Floris Louis
  • Van Berkel, Sander Sebastiaan
  • Hoogenboom, Jorin
  • Van Geel, Remon
  • Popal, Sorraya
  • Verhagen, Mick Petrus Arnoldus
  • Nassiet, Marie
  • Hendriks, Veronique
  • Koç, Ç.

Abstract

The invention concerns analogues of nemorubicin as well as PNU-159,682 with a range of substituents other than 2"-0Me on the morpholino ring that beneficially affected the toxicity of the toxin over the molecules with the 2"-0Me group. In addition, it was found that PNU variants with modified 2"-O-alkyl chain show enhanced tolerability in vivo. Thus, by modification of the 2"-O-alkyl group, ADCs were generated with carefully tailored potency and tolerability to improve the administered dose in patients. The invention thus concerns compounds according to structure (1) and conjugates therewith, as well as pharmaceutical compositions and methods of targeting tumour cells and treating cancer.

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61P 35/00 - Antineoplastic agents

17.

TYROSINE-BASED ANTIBODY CONJUGATES

      
Application Number 18320403
Status Pending
Filing Date 2023-05-19
First Publication Date 2023-12-21
Owner Synaffix B.V. (Netherlands)
Inventor
  • Van Delft, Floris Louis
  • Bruins, Jorick Julian
  • Albada, Hendrik Bauke
  • Wijdeven, Maria Antonia

Abstract

A process for preparing a glycoprotein-conjugate is provided, comprising: (a) providing an N-glycoprotein having an exposed tyrosine residue, wherein the exposed tyrosine residue is located within 10 amino acids of an N-glycosylation site, but the N-glycosylation site has been modified such that the glycoprotein does not contain a glycan longer than two monosaccharide residues within 10 amino acids of the exposed tyrosine residue; (b) converting the phenol moiety of the exposed tyrosine residue into an ortho-quinone moiety by contacting the glycoprotein with an oxidative enzyme capable of oxidizing tyrosine; and (c) reacting the ortho-quinone moiety with an alkene or alkyne compound via a [4+2] cycloaddition, wherein the compound comprises a (hetero)cycloalkene or (hetero)cycloalkyne moiety and (i) a chemical handle to further modify the compound with a payload, or (ii) a payload. The resulting glycoprotein-conjugates and pharmaceutical compositions and methods of treatment comprising same are also disclosed.

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61K 47/60 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic macromolecular compound, e.g. an oligomeric, polymeric or dendrimeric molecule obtained otherwise than by reactions only involving carbon-to-carbon unsaturated bonds, e.g. polyureas or polyurethanes the organic macromolecular compound being a polyoxyalkylene oligomer, polymer or dendrimer, e.g. PEG, PPG, PEO or polyglycerol

18.

VIA CYCLOADDITION BILATERALLY FUNCTIONALIZED ANTIBODIES

      
Application Number 17812155
Status Pending
Filing Date 2022-07-12
First Publication Date 2023-11-16
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Delft, Floris Louis
  • Hoogenboom, Jorin
  • Popal, Sorraya
  • Van Schaik, Arnoldus Jacobus
  • De Bever, Laureen
  • Van Geel, Remon
  • Wijdeven, Maria Antonia
  • Van Berkel, Sander Sebastiaan

Abstract

The present invention provides antibody-payload conjugates having a payload-to-antibody ratio of 1. The antibody-payload conjugate having structure (1): wherein: a, b and c are each independently 0 or 1; L1, L2 and L3 are linkers; D is a payload; BM is a branching moiety; Z are connecting groups obtainable by a cycloaddition reaction. The present invention provides antibody-payload conjugates having a payload-to-antibody ratio of 1. The antibody-payload conjugate having structure (1): wherein: a, b and c are each independently 0 or 1; L1, L2 and L3 are linkers; D is a payload; BM is a branching moiety; Z are connecting groups obtainable by a cycloaddition reaction. The invention further provides a method for preparing the antibody-payload conjugate according to the invention, an intermediate compound in that preparation method, and medical uses of the antibody-payload conjugate according to the invention.

IPC Classes  ?

  • A61K 47/69 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the conjugate being characterised by physical or galenical forms, e.g. emulsion, particle, inclusion complex, stent or kit
  • A61P 35/00 - Antineoplastic agents

19.

GLYCAN-CONJUGATED ANTIBODIES BINDING TO FC-GAMMA RECEPTOR

      
Application Number 18213151
Status Pending
Filing Date 2023-06-22
First Publication Date 2023-11-09
Owner Synaffix B.V. (Netherlands)
Inventor
  • Van Delft, Floris Louis
  • Van Berkel, Sander Sebastiaan
  • Van Geel, Remon
  • Lelieveldt, Lianne

Abstract

The present invention provides antibody-conjugates which are conjugated via the glycan and still bind to a cell comprising an Fc-gamma receptor. The antibody conjugates according to the invention have structure (1): The present invention provides antibody-conjugates which are conjugated via the glycan and still bind to a cell comprising an Fc-gamma receptor. The antibody conjugates according to the invention have structure (1): Ab-[(GlcNAc(Fuc)b-(G)e-(Su-(Z-L-(D)r)x)s]y   (1) The present invention provides antibody-conjugates which are conjugated via the glycan and still bind to a cell comprising an Fc-gamma receptor. The antibody conjugates according to the invention have structure (1): Ab-[(GlcNAc(Fuc)b-(G)e-(Su-(Z-L-(D)r)x)s]y   (1) Herein, Ab is an antibody; GlcNAc is an N-acetylglucosamine moiety; Fuc is a fucose moiety; b is 0 or 1; G is a monosaccharide; e is an integer in the range of 4-10; Su is a monosaccharide; Z is a connecting group obtained by a cycloaddition or a nucleophilic reaction; L is a linker; D is a payload; s is 1 or 2; r is an integer in the range of 1-4; x is 1 or 2; y is 2 or 4.

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment

20.

ENEDIYNE CONJUGATES

      
Application Number 18094887
Status Pending
Filing Date 2023-01-09
First Publication Date 2023-11-02
Owner SynAffix B.V. (Netherlands)
Inventor
  • Verkade, Jorge Merijn Mathieu
  • Hoogenboom, Jorin
  • Van Berkel, Maria Antonia
  • Van Delft, Floris Louis

Abstract

The invention relates to compounds of general structure (1): Q-(L1)n-(L2)o-(L3)p-(L4)q-D (1), wherein Q is a click probe; D is a cytotoxin containing an enediyne moiety; L1, L2, L3 and L4 are each individually linkers that together link Q to D; n, o, p and q are each individually 0 or 1, provided that n+o+p+q=1, 2, 3 or 4, wherein D comprises a functional moiety (21): The invention relates to compounds of general structure (1): Q-(L1)n-(L2)o-(L3)p-(L4)q-D (1), wherein Q is a click probe; D is a cytotoxin containing an enediyne moiety; L1, L2, L3 and L4 are each individually linkers that together link Q to D; n, o, p and q are each individually 0 or 1, provided that n+o+p+q=1, 2, 3 or 4, wherein D comprises a functional moiety (21): The invention relates to compounds of general structure (1): Q-(L1)n-(L2)o-(L3)p-(L4)q-D (1), wherein Q is a click probe; D is a cytotoxin containing an enediyne moiety; L1, L2, L3 and L4 are each individually linkers that together link Q to D; n, o, p and q are each individually 0 or 1, provided that n+o+p+q=1, 2, 3 or 4, wherein D comprises a functional moiety (21): wherein R12═C1-3-alkyl, the wavy line indicates the connection to the remainder of the cytotoxin, and wherein D is conjugated to (L4)q by replacing the amine H atom, and to conjugates obtainable by reacting the compound according to the invention with a protein comprising a click probe F capable of reacting with click probe Q in a click reaction. The invention further relates to a bioconjugate according to general structure (2): Pr-[(L6)-Z-(L1)n-(L2)o-(L3)p-(L4)q-D]xx (2), wherein Z is a connecting group that is formed in a click reaction, L6 is a linker that links Z to Pr and Pr is a (glyco)protein.

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment

21.

METHODS FOR THE PREPARATION OF LINKER PAYLOAD CONSTRUCTS

      
Application Number 18087678
Status Pending
Filing Date 2022-12-22
First Publication Date 2023-10-26
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Verkade, Jorge Merijn Mathieu
  • Van Berkel, Sander Sebastiaan
  • Van Delft, Floris Louis

Abstract

The present invention concerns a method for the preparation of an alkyne-linker-payload construct of structure Q-L-C(O)—NR3-D (1), comprising reacting (i) an alkyne compound of structure Q-L-C(O)-X (2), wherein Q is an alkyne moiety selected from the group consisting of terminal alkyne and (hetero)cycloalkyne; L is a linker, and X is a leaving group selected from halogen, SR1, O-succinimidyl, O-(hetero)aryl(R2)1-5, wherein R1 is selected from C1-C6 alkyl and (hetero)aryl; and R2 is C1-C6 alkyl, halogen or NO2; with (ii) a molecule of structure D-NHR3 (3), wherein D is a payload, and R3 is selected from hydrogen, optionally substituted C1-C24 alkyl, optionally substituted aryl. The activated ester derivatives (2) are highly stable and provide for smooth and high-yielding attachment to a cytotoxic payload. The invention further concerns a method for preparing bioconjugates and alkyne compound of structure Q-L-C(O)-X (2).

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61K 47/54 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic compound

22.

ANTIBODY-EXATECAN CONJUGATES

      
Application Number 18121447
Status Pending
Filing Date 2023-03-14
First Publication Date 2023-10-19
Owner Synaffix B.V. (Netherlands)
Inventor
  • Hoogenboom, Jorin
  • Van Schaik, Arnoldus Jacobus
  • Popal, Sorraya
  • De Bever, Laureen
  • Wijdeven, Maria Antonia
  • Van Geel, Remon
  • Hurkmans, Inge Catharina Josephina
  • Van De Sande, Peter
  • Van Berkel, Sander Sebastiaan
  • Van Delft, Floris Louis

Abstract

The present invention concerns an antibody-drug conjugate, having structure (1) The present invention concerns an antibody-drug conjugate, having structure (1) The present invention concerns an antibody-drug conjugate, having structure (1) wherein AB is an antibody; L1 and L2 are linkers; w is 0 or 1; Z is a connecting group obtained by a metal-free click reaction or by thiol ligation; each R17 is individually an amino acid side chain; n is an integer in the range of 1-5; A is a 5- or 6-membered aromatic or heteroaromatic ring; x is an integer in the range of 1-8; R21 is selected from H, R22, C(O)OH and C(O)R22, wherein R22 is C1-C24 (hetero)alkyl groups, C3-C10 (hetero)cycloalkyl groups, C2-C10 (hetero)aryl groups, C3-C10 alkyl(hetero)aryl groups and C3-C10 (hetero)arylalkyl groups, which optionally substituted and optionally interrupted by one or more heteroatoms selected from O, S and NR23 wherein R23 is independently selected from the group consisting of hydrogen and C1-C4 alkyl groups.

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • C07K 16/32 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against translation products from oncogenes
  • A61P 35/00 - Antineoplastic agents

23.

ANTIBODY-CONJUGATES FOR TARGETING OF TUMOURS EXPRESSING TROP-2

      
Document Number 03253220
Status Pending
Filing Date 2023-03-23
Open to Public Date 2023-09-28
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Lelieveldt, Lianne
  • Wijdeven, Maria Antonia
  • Van Berkel, Sander Sebastiaan
  • Van Delft, Floris Louis
  • Van Geel, Remon

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment

24.

ANTIBODY-CONJUGATES FOR TARGETING OF TUMOURS EXPRESSING PTK7

      
Document Number 03254479
Status Pending
Filing Date 2023-03-23
Open to Public Date 2023-09-28
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Lelieveldt, Lianne
  • Van Berkel, Sander Sebastiaan
  • Van Geel, Remon
  • Van Delft, Floris Louis

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment

25.

ANTIBODY-CONJUGATES FOR TARGETING OF TUMOURS EXPRESSING CARCINOEMBYRONIC ANTIGEN

      
Document Number 03254964
Status Pending
Filing Date 2023-03-23
Open to Public Date 2023-09-28
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Berkel, Sander Sebastiaan
  • Lelieveldt, Lianne
  • Van Delft, Floris Louis
  • Van Geel, Remon

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment

26.

ANTIBODY-CONJUGATES FOR TARGETING OF TUMOURS EXPRESSING PTK7

      
Application Number EP2023057560
Publication Number 2023/180484
Status In Force
Filing Date 2023-03-23
Publication Date 2023-09-28
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Lelieveldt, Lianne
  • Van Geel, Remon
  • Van Berkel, Sander Sebastiaan
  • Van Delft, Floris Louis

Abstract

6bxyy (1) Herein, AB is an antibody capable of targeting PTK7-expressing tumours; L is a linker that links Z to D; Z is a connecting group; L6ww-(G)j-S-(L7w'w'-, wherein G is a monosaccharide, j is an integer in the range of 0 – 10, S is a sugar or a sugar derivative, GlcNAc is N- acetylglucosamine and Fuc is fucose, w is 0 or 1, w' is 0, 1 or 2 and L7is _2222-; D is selected from the group consisting of anthracyclines, camptothecins, tubulysins, enediynes, amanitins, duocarmycins, maytansinoids, auristatins, eribulins, BCL-XL inhibitors, hemiasterlins, KSP inhibitors, TLR agonists, indolinobenzodiazepine dimers or pyrrolobenzodiazepine dimers (PBDs), and analogues or prodrugs thereof; b is 0 or 1; x is 1 or 2; and y is 1, 2, 3 or 4. The invention further concerns a method for preparing the antibody- conjugates of structure (1) and application of the antibody-conjugates of structure (1).

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61P 35/00 - Antineoplastic agents

27.

ANTIBODY-CONJUGATES FOR TARGETING OF TUMOURS EXPRESSING TROP-2

      
Application Number EP2023057561
Publication Number 2023/180485
Status In Force
Filing Date 2023-03-23
Publication Date 2023-09-28
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Wijdeven, Maria Antonia
  • Van Geel, Remon
  • Van Berkel, Sander Sebastiaan
  • Van Delft, Floris Louis

Abstract

The present invention concerns antibody-conjugates which are especially suitable for the targeting of Trop-2-expressing cells, in particular tumour cells. The antibody-conjugates according to the invention have structure (1): Herein, AB is an antibody capable of targeting Trop-2-expressing tumours; L is a linker that links Z to D; Z is a connecting group; L6ww–(G)j–S–(L7ww'–, wherein G is a monosaccharide, j is an integer in the range of 0 – 10, S is a sugar or a sugar derivative, GlcNAc is N- acetylglucosamine and Fuc is fucose, w is 0 or 1, w' is 0, 1 or 2 and L72222–; D is exatecan; b is 0 or 1; x is 1 or 2; and y is 1, 2, 3 or 4. The invention further concerns a method for preparing the antibody-conjugates of structure (1) and application of the antibody-conjugates of structure (1).

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61P 35/00 - Antineoplastic agents

28.

ANTIBODY-CONJUGATES FOR TARGETING OF TUMOURS EXPRESSING CARCINOEMBYRONIC ANTIGEN

      
Application Number EP2023057565
Publication Number 2023/180489
Status In Force
Filing Date 2023-03-23
Publication Date 2023-09-28
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Lelieveldt, Lianne
  • Van Geel, Remon
  • Van Berkel, Sander Sebastiaan
  • Van Delft, Floris Louis

Abstract

The present invention concerns antibody-conjugates which are especially suitable for the targeting of CEA-expressing cells, in particular tumour cells. The antibody-conjugates according to the invention have structure (1): AB-[(L6bxyy (1) Herein, AB is an antibody capable of targeting CEA-expressing tumours; L is a linker that links Z to D; Z is a connecting group; L6wjj-S-(L7w2222-; D is selected from the group consisting of anthracyclines, camptothecins, tubulysins, enediynes, amanitins, duocarmycins, maytansinoids, auristatins, eribulins, BCL-XL inhibitors, hemiasterlins, KSP inhibitors, TLR agonists, indolinobenzodiazepine dimers or pyrrolobenzodiazepine dimers (PBDs), and analogues or prodrugs thereof; b is 0 or 1; x is 1 or 2; and y is 1, 2, 3 or 4. The invention further concerns a method for preparing the antibody-conjugates of structure (1) and application of the antibody-conjugates of structure (1).

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61P 35/00 - Antineoplastic agents

29.

ANTIBODY-CONJUGATES FOR TARGETING OF TUMOURS EXPRESSING NECTIN-4

      
Application Number EP2023057566
Publication Number 2023/180490
Status In Force
Filing Date 2023-03-23
Publication Date 2023-09-28
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Lelieveldt, Lianne
  • Van Geel, Remon
  • Van Berkel, Sander Sebastiaan
  • Van Delft, Floris Louis

Abstract

The present invention concerns antibody-conjugates which are especially suitable for the targeting of nectin-4-expressing cells, in particular tumour cells. The antibody-conjugates according to the invention have structure (1): AB–[(L6bxy y (1) Herein, AB is an antibody capable of targeting nectin-4-expressing tumours; L is a linker that links Z to D; Z is a connecting group; L6ww–(G)j–S–(L7w'w'–, wherein G is a monosaccharide, j is an integer in the range of 0 – 10, S is a sugar or a sugar derivative, GlcNAc is N-acetylglucosamine and Fuc is fucose, w is 0 or 1, w' is 0, 1 or 2 and L72222–; D is selected from the group consisting of anthracyclines, camptothecins, tubulysins, enediynes, amanitins, duocarmycins, maytansinoids, auristatins, eribulins, BCL-XL inhibitors, hemiasterlins, KSP inhibitors, TLR agonists, indolinobenzodiazepine dimers or pyrrolobenzodiazepine dimers (PBDs), and analogues or prodrugs thereof; b is 0 or 1; x is 1 or 2; and y is 1, 2, 3 or 4. The invention further concerns a method for preparing the antibody- conjugates of structure (1) and application of the antibody-conjugates of structure (1).

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61P 35/00 - Antineoplastic agents

30.

METHODS FOR THE PREPARATION OF BIOCONJUGATES

      
Application Number 18116172
Status Pending
Filing Date 2023-03-01
First Publication Date 2023-07-20
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Wijdeven, Maria Antonia
  • Van Geel, Remon
  • De Bever, Laureen
  • Van Berkel, Sander Sebastiaan
  • Van Delft, Floris Louis

Abstract

A surfactant for a bioconjugation reaction is disclosed, wherein a biomolecule comprising one or more azide moieties is connected to an cyclic alkyne comprising payload. More specifically, the invention concerns a method for the preparation of a bioconjugate of structure B—(Z—L—D)x (1), comprising reacting (i) an alkyne or alkene compound of structure Q—L—D (2), wherein Q is a click probe comprising a cyclic alkyne moiety or a cyclic alkene moiety, L is a linker, and D is a payload; with (ii) a molecule of structure B—(F)x (3), wherein B is a biomolecule that is functionalized with x click probes F; F is a click probe capable of reacting with Q, and x is an integer in the range of 1-10, in presence of a surfactant.

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment

31.

CONJUGATES OF ANTIBODIES AN IMMUNE CELL ENGAGERS

      
Application Number 17812160
Status Pending
Filing Date 2022-07-12
First Publication Date 2023-06-22
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Geel, Remon
  • Vugs, Willem Johannes Petrus
  • Van Berkel, Sander Sebastiaan
  • Van Delft, Floris Louis

Abstract

The present invention concerns a process for preparing a multispecific antibody construct, comprising conjugating a functionalized antibody Ab(F)x containing x reactive moieties F, wherein x is an integer in the range 1 -10, and an immune cell-engaging polypeptide containing one or two reactive moieties Q, wherein the antibody is specific for a tumour cell and the immune cell-engaging polypeptide is specific for an immune cell, wherein the reaction forms a covalent linkage between the functionalized antibody and the immune cell-engaging polypeptide by reaction of Q with F. The invention further concerns the multispecific antibody constructs obtainable by the process according to the invention and medical uses thereof.

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment

32.

ANTIBODY-CONJUGATES WITH IMPROVED THERAPEUTIC INDEX FOR TARGETING HER2 TUMOURS AND METHOD FOR IMPROVING THERAPEUTIC INDEX OF ANTIBODY-CONJUGATES

      
Application Number 17749953
Status Pending
Filing Date 2022-05-20
First Publication Date 2023-04-27
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Berkel, Sander Sebastiaan
  • Verkade, Jorge Merijn Mathieu
  • Wijdeven, Maria Antonia
  • Heesbeen, Ryan
  • Van De Sande, Petrus Josephus Jacobus Maria
  • Van Geel, Remon
  • Janssen, Brian Maria Gerardus
  • Hurkmans, Inge Catharina Josephina
  • Van Delft, Floris Louis

Abstract

The present invention concerns novel and improved antibody-conjugates for targeting HER2. The inventors found that when antibody-conjugates were prepared using a specific mode of conjugation, they exhibit an improved therapeutic index. The mode of conjugation comprises a first step (i) of contacting a glycoprotein comprising 1-4 core N-acetylglucosamine moieties with a compound of the formula S(F1)x—P in the presence of a catalyst, wherein S(F1)x is a sugar derivative comprising x functional groups F1 capable of reacting with a functional group Q1, x is 1 or 2 and P is a nucleoside mono- or diphosphate, and wherein the catalyst is capable of transferring the S(F1)x moiety to the core-GlcNAc moiety, to obtain a modified antibody; and a second step (ii) of reacting the modified antibody with a linker-conjugate comprising a functional group Q1 capable of reacting with functional group F1 and a target molecule D connected to Q1 via a linker L2 to obtain the antibody-conjugate wherein linker L comprises S—Z3-L2 and wherein Z3 is a connecting group resulting from the reaction between Q1 and F1. The invention also relates to a use for improving the therapeutic index of an antibody-conjugate and to a method for targeting HER2-expressing cells.

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61K 38/07 - Tetrapeptides
  • C07K 16/30 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants from tumour cells
  • A61K 47/65 - Peptidic linkers, binders or spacers, e.g. peptidic enzyme-labile linkers
  • A61K 47/54 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic compound
  • A61K 47/59 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic macromolecular compound, e.g. an oligomeric, polymeric or dendrimeric molecule obtained otherwise than by reactions only involving carbon-to-carbon unsaturated bonds, e.g. polyureas or polyurethanes
  • A61P 35/02 - Antineoplastic agents specific for leukemia
  • A61K 47/34 - Macromolecular compounds obtained otherwise than by reactions only involving carbon-to-carbon unsaturated bonds, e.g. polyesters, polyamino acids, polysiloxanes, polyphosphazines, copolymers of polyalkylene glycol or poloxamers
  • A61K 47/42 - ProteinsPolypeptidesDegradation products thereofDerivatives thereof, e.g. albumin, gelatin or zein
  • C07K 16/32 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against translation products from oncogenes
  • C07K 16/28 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants

33.

VIA CYCLOADDITION BILATERALLY FUNCTIONALIZED ANTIBODIES

      
Application Number 17812153
Status Pending
Filing Date 2022-07-12
First Publication Date 2023-04-13
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Delft, Floris Louis
  • Hoogenboom, Jorin
  • Popal, Sorraya
  • Van Schaik, Arnoldus Jacobus
  • De Bever, Laureen
  • Van Geel, Remon
  • Wijdeven, Maria Antonia
  • Van Berkel, Sander Sebastiaan

Abstract

The present invention provides antibody-payload conjugates having a payload-to-antibody ratio of 1. The antibody-payload conjugate is according to structure (1): The present invention provides antibody-payload conjugates having a payload-to-antibody ratio of 1. The antibody-payload conjugate is according to structure (1): The present invention provides antibody-payload conjugates having a payload-to-antibody ratio of 1. The antibody-payload conjugate is according to structure (1): wherein: a, b, c and d are each independently 0 or 1; e is an integer in the range of 0-10; L1, L2 and L3 are linkers; D is a payload; BM is a branching moiety; Su is a monosaccharide; G is a monosaccharide moiety; GlcNAc is an N-acetylglucosamine moiety; Fuc is a fucose moiety; Z are connecting groups. The present invention provides antibody-payload conjugates having a payload-to-antibody ratio of 1. The antibody-payload conjugate is according to structure (1): wherein: a, b, c and d are each independently 0 or 1; e is an integer in the range of 0-10; L1, L2 and L3 are linkers; D is a payload; BM is a branching moiety; Su is a monosaccharide; G is a monosaccharide moiety; GlcNAc is an N-acetylglucosamine moiety; Fuc is a fucose moiety; Z are connecting groups. The invention further provides a method for preparing the antibody-payload conjugate according to the invention, an intermediate compound in that preparation method, and medical uses of the antibody-payload conjugate according to the invention.

IPC Classes  ?

  • A61K 47/64 - Drug-peptide, drug-protein or drug-polyamino acid conjugates, i.e. the modifying agent being a peptide, protein or polyamino acid which is covalently bonded or complexed to a therapeutically active agent
  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment

34.

Process for the modification of a glycoprotein using a glycosyltransferase that is or is derived from a β(1,4)-n-acetylgalactosaminyltransferase

      
Application Number 17711423
Grant Number 12049656
Status In Force
Filing Date 2022-04-01
First Publication Date 2023-03-30
Grant Date 2024-07-30
Owner Synaffix B.V. (Netherlands)
Inventor
  • Van Berkel, Sander Sebastiaan
  • Van Geel, Remon
  • Wijdeven, Maria Antonia
  • Van Delft, Floris Louis

Abstract

The present invention relates to a process for the enzymatic modification of a glycoprotein. The process comprises the step of contacting a glycoprotein comprising a glycan comprising a terminal GlcNAc-moiety, in the presence of glycosyltransferase that is, or is derived from, a β-(1,4)-N-acetylgalactosaminyltransferase, with a non-natural sugar-derivative nucleotide. The non-natural sugar-derivative nucleotide is according to formula (3): 24 allenyl groups and amino groups. The invention further relates to a glycoprotein obtainable by the process according to the invention, to a bioconjugate that can be obtained by conjugating the glycoprotein with a linker-conjugate, and to β-(1,4)-N-acetylgalactosaminyltransferases that can be used in preparing the glycoprotein according to the invention.

IPC Classes  ?

  • C12P 21/00 - Preparation of peptides or proteins
  • A61K 47/61 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic macromolecular compound, e.g. an oligomeric, polymeric or dendrimeric molecule the organic macromolecular compound being a polysaccharide or a derivative thereof
  • A61K 47/64 - Drug-peptide, drug-protein or drug-polyamino acid conjugates, i.e. the modifying agent being a peptide, protein or polyamino acid which is covalently bonded or complexed to a therapeutically active agent
  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • C07K 16/28 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
  • C07K 16/32 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against translation products from oncogenes
  • C12N 9/10 - Transferases (2.)

35.

Fused cyclooctyne compounds and their use in metal-free click reactions

      
Application Number 17839202
Grant Number 12180145
Status In Force
Filing Date 2022-06-13
First Publication Date 2023-03-30
Grant Date 2024-12-31
Owner Synaffix B.V. (Netherlands)
Inventor
  • Van Delft, Floris Louis
  • Theodorus Rutjes, Floris Petrus Johannes
  • Dommerholt, Frederik Jan

Abstract

The invention relates to fused cyclooctyne compounds, and to a method for their preparation. The invention also relates to a conjugate wherein a fused cyclooctyne compound according to the invention is conjugated to a label, and to the use of these conjugates in bioorthogonal labeling, imaging and/or modification, such as for example surface modification, of a target molecule. The invention further relates to a method for the modification of a target molecule, wherein a conjugate according to the invention is reacted with a compound comprising a 1,3-dipole or a 1,3-(hetero)diene.

IPC Classes  ?

  • C07D 249/16 - Heterocyclic compounds containing five-membered rings having three nitrogen atoms as the only ring hetero atoms condensed with carbocyclic rings or ring systems
  • A61K 47/54 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic compound
  • A61K 49/00 - Preparations for testing in vivo
  • C07C 29/147 - Preparation of compounds having hydroxy or O-metal groups bound to a carbon atom not belonging to a six-membered aromatic ring by reduction of an oxygen-containing functional group of C=O containing groups, e.g. —COOH of carboxylic acids or derivatives thereof
  • C07C 29/58 - Preparation of compounds having hydroxy or O-metal groups bound to a carbon atom not belonging to a six-membered aromatic ring by elimination of halogen, e.g. by hydrogenolysis, splitting-off
  • C07C 29/62 - Preparation of compounds having hydroxy or O-metal groups bound to a carbon atom not belonging to a six-membered aromatic ring by introduction of halogenPreparation of compounds having hydroxy or O-metal groups bound to a carbon atom not belonging to a six-membered aromatic ring by substitution of halogen atoms by other halogen atoms
  • C07C 33/16 - Alcohols containing rings other than six-membered aromatic rings containing rings with more than six ring members
  • C07C 62/30 - Unsaturated compounds
  • C07C 67/347 - Preparation of carboxylic acid esters by modifying the acid moiety of the ester, such modification not being an introduction of an ester group by isomerisationPreparation of carboxylic acid esters by modifying the acid moiety of the ester, such modification not being an introduction of an ester group by change of size of the carbon skeleton by increase in the number of carbon atoms by addition to unsaturated carbon-to-carbon bonds
  • C07C 269/06 - Preparation of derivatives of carbamic acid, i.e. compounds containing any of the groups the nitrogen atom not being part of nitro or nitroso groups by reactions not involving the formation of carbamate groups
  • C07C 271/12 - Esters of carbamic acids having oxygen atoms of carbamate groups bound to acyclic carbon atoms with the nitrogen atoms of the carbamate groups bound to hydrogen atoms or to acyclic carbon atoms to hydrogen atoms or to carbon atoms of unsubstituted hydrocarbon radicals
  • C07C 271/20 - Esters of carbamic acids having oxygen atoms of carbamate groups bound to acyclic carbon atoms with the nitrogen atoms of the carbamate groups bound to hydrogen atoms or to acyclic carbon atoms to carbon atoms of hydrocarbon radicals substituted by nitrogen atoms not being part of nitro or nitroso groups
  • C07D 261/20 - Heterocyclic compounds containing 1,2-oxazole or hydrogenated 1,2-oxazole rings condensed with carbocyclic rings or ring systems
  • C07D 311/82 - Xanthenes
  • C07D 495/04 - Ortho-condensed systems
  • C07K 14/47 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from animalsPeptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from humans from vertebrates from mammals
  • G01N 21/64 - FluorescencePhosphorescence
  • G01N 33/532 - Production of labelled immunochemicals
  • G01N 33/58 - Chemical analysis of biological material, e.g. blood, urineTesting involving biospecific ligand binding methodsImmunological testing involving labelled substances

36.

MULTIFUNCTIONAL ANTIBODIES

      
Application Number EP2022053024
Publication Number 2022/167689
Status In Force
Filing Date 2022-02-08
Publication Date 2022-08-11
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Geel, Remon
  • Wijdeven, Maria, Antonia
  • Vugs, Willem, Johannes, Petrus
  • De Bever, Laureen
  • Popal, Sorraya
  • Hoogenboom, Jorin
  • Van Berkel, Sander, Sebastiaan
  • Van Delft, Floris, Louis

Abstract

The present invention concerns multifunctional antibody construct containing at least one antibody Ab and two distinct payloads D1and D2of structure (1) or (2). Wherein L1, L2, L3, L4and L5are linkers; x1 and x2 are each individually an integer in the range of 1 – 8, wherein x1 + x2 = 2 - 10; BM is a branching moiety; m and n are each independently 0 or 1; x3 is an integer in the range of 1 - 4; and D1and D2are two distinct payloads selected from the group consisting of polypeptides, small molecules, cytotoxins and oligonucleotides, wherein at least one of D1and D2 is a polypeptide. The multifunctional antibody construct according to invention are suitable for use in medicine, such as for use in the treatment of cancer, a viral infection, a bacterial infection, a neurological disease, an autoimmune disease, an eye disease, hypercholesterolemia and amyloidosis.

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61P 35/00 - Antineoplastic agents

37.

GLYCAN-CONJUGATED ANTIBODIES BINDING TO FC-GAMMA RECEPTOR

      
Application Number EP2021087648
Publication Number 2022/136705
Status In Force
Filing Date 2021-12-24
Publication Date 2022-06-30
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Delft, Floris Louis
  • Van Berkel, Sander Sebastiaan
  • Van Geel, Remon
  • Lelieveldt, Lianne

Abstract

berxsyNN-acetylglucosamine moiety; Fuc is a fucose moiety; b is 0 or 1; G is a monosaccharide; e is an integer in the range of 4 - 10; Su is a monosaccharide; Z is a connecting group obtained by a cycloaddition or a nucleophilic reaction; L is a linker; D is a payload; s is 1 or 2; r is an integer in the range of 1 - 4; x is 1 or 2; y is 2 or 4.

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61P 35/00 - Antineoplastic agents

38.

TYROSINE-BASED ANTIBODY CONJUGATES

      
Application Number NL2021050714
Publication Number 2022/108452
Status In Force
Filing Date 2021-11-22
Publication Date 2022-05-27
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Delft, Floris Louis
  • Bruins, Jorick Julian
  • Albada, Hendrik Bauke
  • Wijdeven, Maria Antonia

Abstract

The present invention concerns the finding that that natural N-glycoprotein are not sensitive to oxidative enzymes like tyrosinase or (poly)phenol oxidase, however if the native N-glycan is modified such that the glycoprotein does not contain a glycan longer than two monosaccharide residues within 10 amino acids of a tyrosine residue, that tyrosine residue of the glycoprotein becomes exposed, and susceptible to oxidative enzymes, leading to the formation of ortho-quinone. By performing the enzymatic oxidation in the presence of a strained alkyne or alkene, the resulting ortho-quinone undergoes in situ [4+2] cycloaddition to form conjugates having structure (1a) or (1b): (1a); Pr–[Z1–L–(Q2xyy or (1b); Pr–[Z1xyNN-glycoprotein; - Z1comprises structure (Za) or (Zb): wherein the carbon labelled with * is directly connected to the peptide chain of the antibody at an amino acid located within 10 amino acids of an N-glycosylation site, which has been modified such that the glycoprotein does not contain a glycan longer than two monosaccharide residues within 10 amino acids of the amino acid residue, and both of the carbon atoms labelled with ** are connected to L, and the bond depicted as (I) is a single bond or a double bond; - L is a linker; - x is an integer in the range of 1 – 4; - y is an integer in the range of 1 – 4; - Q2 is a chemical handle that is reactive towards an appropriately functionalized payload; - D is a payload.

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61P 35/00 - Antineoplastic agents

39.

Synthesis of 6-azido-6-deoxy-2-n-acetyl-hexosamine-nucleoside diphosphate

      
Application Number 17582707
Grant Number 12281135
Status In Force
Filing Date 2022-01-24
First Publication Date 2022-05-26
Grant Date 2025-04-22
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Hoogenboom, Jorin
  • Wijdeven, Maria Antonia
  • Verkade, Jorge Merijn Mathieu
  • Van Delft, Floris Louis
  • Van Berkel, Sander Sebastiaan

Abstract

The current invention concerns methods for the synthesis of 6-azido-6-deoxy-2-N-acetyl-monosaccharide-nucleoside diphosphate, in particular 6-azido-6-deoxy-2-N-acetyl-D-galactosamine-nucleoside diphosphate or 6-azido-6-deoxy-2-N-acetyl-D-glucosamine-nucleoside diphosphate. The synthesis method according to the invention is characterized by being highly efficient and high yielding. Also part of the present invention are key intermediates of this process.

IPC Classes  ?

  • C07H 19/10 - Pyrimidine radicals with the saccharide radical being esterified by phosphoric or polyphosphoric acids
  • C07H 1/02 - Phosphorylation
  • C07H 1/04 - Introducing polyphosphoric acid radicals
  • C07H 15/12 - Acyclic radicals, not substituted by cyclic structures attached to a nitrogen atom of a saccharide radical

40.

ACETAL-BASED CLEAVABLE LINKERS

      
Application Number 17539929
Status Pending
Filing Date 2021-12-01
First Publication Date 2022-03-31
Owner Synaffix B.V. (Netherlands)
Inventor
  • Verkade, Jorge Merijn Mathieu
  • Van Schaik, Arnoldus Jacobus
  • Van Geel, Remon
  • Wijdeven, Maria Antonia
  • Van Berkel, Sander Sebastiaan
  • Van Delft, Floris Louis

Abstract

The current invention concerns compounds, such as antibody-conjugates, with an enhanced selectivity of payload release inside a tumour or in the tumour microenvironment versus payload release in circulation or in healthy cells. The enhanced selectivity is achieved by incorporation of a cleavable linker that requires two consecutive mechanisms for release of the payload. The compounds according to the invention have structure (1): The current invention concerns compounds, such as antibody-conjugates, with an enhanced selectivity of payload release inside a tumour or in the tumour microenvironment versus payload release in circulation or in healthy cells. The enhanced selectivity is achieved by incorporation of a cleavable linker that requires two consecutive mechanisms for release of the payload. The compounds according to the invention have structure (1): The current invention concerns compounds, such as antibody-conjugates, with an enhanced selectivity of payload release inside a tumour or in the tumour microenvironment versus payload release in circulation or in healthy cells. The enhanced selectivity is achieved by incorporation of a cleavable linker that requires two consecutive mechanisms for release of the payload. The compounds according to the invention have structure (1): or a salt thereof, wherein AB is an antibody or a reactive moiety capable of reacting with a functional group on an antibody, L1 and L2 are linkers, moiety I contains an activating group and an aromatic ring, X is O or N and D is the payload. The invention further concerns application of these compounds in for example a method of targeting a cell and a method for enhancing the bystander effect of an amino-containing payload. The invention also concerns the payloads that may be released from the compounds according to the invention.

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61K 31/4995 - Pyrazines or piperazines forming part of bridged ring systems

41.

ANTIBODY-EXATECAN CONJUGATES

      
Application Number EP2021075401
Publication Number 2022/058395
Status In Force
Filing Date 2021-09-15
Publication Date 2022-03-24
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Hoogenboom, Jorin
  • Van Schaik, Arnoldus Jacobus
  • Popal, Sorraya
  • De Bever, Laureen
  • Wijdeven, Maria Antonia
  • Van Geel, Remon
  • Hurkmans, Inge Catharina Josephina
  • Van De Sande, Peter
  • Van Berkel, Sander Sebastiaan
  • Van Delft, Floris Louis

Abstract

The present invention concerns an antibody-drug conjugate, having structure (1) wherein AB is an antibody; L1and L2are linkers; w is 0 or 1; Z is a connecting group obtained by a metal-free click reaction or by thiol ligation; each R17is individually an amino acid side chain; n is an integer in the range of 1 - 5; A is a 5- or 6-membered aromatic or heteroaromatic ring; x is an integer in the range of 1 - 8; R21is selected from H, R22, C(0)0H and C(0)R22, wherein R2212431021031031010 (hetero)arylalkyl groups, which optionally substituted and optionally interrupted by one or more heteroatoms selected from O, S and NR23wherein R23144 alkyl groups.

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61P 35/00 - Antineoplastic agents
  • C07D 491/00 - Heterocyclic compounds containing in the condensed ring system both one or more rings having oxygen atoms as the only ring hetero atoms and one or more rings having nitrogen atoms as the only ring hetero atoms, not provided for by groups , , or

42.

METHODS FOR THE PREPARATION OF BIOCONJUGATES

      
Application Number EP2021074296
Publication Number 2022/049211
Status In Force
Filing Date 2021-09-02
Publication Date 2022-03-10
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Wijdeven, Maria Antonia
  • Van Geel, Remon
  • De Bever, Laureen
  • Van Berkel, Sander Sebastiaan
  • Van Delft, Floris Louis

Abstract

xxx (3), wherein B is a biomolecule that is functionalized with x click probes F; F is a click probe capable of reacting with Q, and x is an integer in the range of 1 – 10, in presence of a surfactant. The use of the surfactant increases the conversion of the bioconjugation reaction; increases the yield of the bioconjugation reaction; reduces the amount of organic co-solvent in the solvent system wherein the bioconjugation reaction is performed; provides flexibility in the concentration of biomolecule during the bioconjugation reaction; reduces the excess of alkyne- or alkene-functionalized payload used during the bioconjugation reaction; reduces the extent of aggregate formation during the bioconjugation reaction and simplifies downstream processing of the bioconjugate.

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61P 35/00 - Antineoplastic agents

43.

Process for the cycloaddition of a (hetero)aryl 1,3-dipole compound with a (hetero)cycloalkyne

      
Application Number 17503138
Grant Number 12084448
Status In Force
Filing Date 2021-10-15
First Publication Date 2022-02-17
Grant Date 2024-09-10
Owner Synaffix B.V. (Netherlands)
Inventor
  • Van Delft, Floris Louis
  • Dommerholt, Frederik Jan

Abstract

and wherein the (hetero)cycloalkyne is a (hetero)cyclooctyne or a (hetero)cyclononyne according to Formula (1). The invention also relates to the products obtainable by the process according to the invention.

IPC Classes  ?

  • C07D 487/04 - Ortho-condensed systems
  • A61K 47/54 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic compound
  • A61K 47/60 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic macromolecular compound, e.g. an oligomeric, polymeric or dendrimeric molecule obtained otherwise than by reactions only involving carbon-to-carbon unsaturated bonds, e.g. polyureas or polyurethanes the organic macromolecular compound being a polyoxyalkylene oligomer, polymer or dendrimer, e.g. PEG, PPG, PEO or polyglycerol
  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • C07C 269/06 - Preparation of derivatives of carbamic acid, i.e. compounds containing any of the groups the nitrogen atom not being part of nitro or nitroso groups by reactions not involving the formation of carbamate groups
  • C07C 271/18 - Esters of carbamic acids having oxygen atoms of carbamate groups bound to acyclic carbon atoms with the nitrogen atoms of the carbamate groups bound to hydrogen atoms or to acyclic carbon atoms to carbon atoms of hydrocarbon radicals substituted by doubly-bound oxygen atoms
  • C07D 225/02 - Heterocyclic compounds containing rings of more than seven members having one nitrogen atom as the only ring hetero atom not condensed with other rings
  • C07D 225/08 - Heterocyclic compounds containing rings of more than seven members having one nitrogen atom as the only ring hetero atom condensed with carbocyclic rings or ring systems condensed with two six-membered rings
  • C07D 231/54 - Heterocyclic compounds containing 1,2-diazole or hydrogenated 1,2-diazole rings condensed with carbocyclic rings or ring systems
  • C07D 249/16 - Heterocyclic compounds containing five-membered rings having three nitrogen atoms as the only ring hetero atoms condensed with carbocyclic rings or ring systems
  • C07D 261/20 - Heterocyclic compounds containing 1,2-oxazole or hydrogenated 1,2-oxazole rings condensed with carbocyclic rings or ring systems
  • C07H 19/10 - Pyrimidine radicals with the saccharide radical being esterified by phosphoric or polyphosphoric acids
  • C07K 14/47 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from animalsPeptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from humans from vertebrates from mammals

44.

METHODS FOR THE PREPARATION OF LINKER PAYLOAD CONSTRUCTS

      
Application Number EP2021067754
Publication Number 2021/260232
Status In Force
Filing Date 2021-06-28
Publication Date 2021-12-30
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Verkade, Jorge Merijn Mathieu
  • Van Berkel, Sander Sebastiaan
  • Van Delft, Floris Louis

Abstract

The present invention concerns a method for the preparation of an alkyne-linker-payload construct of structure Q-L-C (O)-NR3-D (1), comprising reacting (i) an alkyne compound of structure Q-L- C(O)-X (2), wherein Q is an alkyne moiety selected from the group consisting of terminal alkyne and (hetero)cycloalkyne; L is a linker, and X is a leaving group selected from halogen, SR1, O-succinimidyl, O-(hetero)aryl(R21-51-5, wherein R1166 alkyl and (hetero)aryl; and R21622; with (ii) a molecule of structure D-NHR3(3), wherein D is a payload, and R312424 alkyl, optionally substituted aryl. The activated ester derivatives (2) are highly stable and provide for smooth and high-yielding attachment to a cytotoxic payload. The invention further concerns a method for preparing bioconjugates and alkyne compound of structure Q-L-C (O)-X (2).

IPC Classes  ?

  • C07C 307/04 - Diamides of sulfuric acids
  • C07D 207/46 - Heterocyclic compounds containing five-membered rings not condensed with other rings, with one nitrogen atom as the only ring hetero atom with hetero atoms directly attached to the ring nitrogen atom
  • A61K 47/50 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates

45.

ANTIBODY-CONJUGATES FOR TARGETING OF TUMOURS EXPRESSING TROP-2

      
Application Number 17307447
Status Pending
Filing Date 2021-05-04
First Publication Date 2021-12-23
Owner Synaffix B.V. (Netherlands)
Inventor
  • Wijdeven, Maria Antonia
  • Verkade, Jorge Merijn Mathieu
  • Hoogenboom, Jorin
  • Van Berkel, Sander Sebastiaan
  • Van Delft, Floris Louis
  • Van De Sande, Petrus Josephus Jacobus Maria

Abstract

The present invention concerns antibody-conjugate having general structure (2): The present invention concerns antibody-conjugate having general structure (2): AB-[(L6)-{Z-(L1)n-(L2)o-(L3)p-(L4)q-D}xx]yy   (2) The present invention concerns antibody-conjugate having general structure (2): AB-[(L6)-{Z-(L1)n-(L2)o-(L3)p-(L4)q-D}xx]yy   (2) wherein AB is an antibody capable of targeting Trop-2-expressing tumours and D is selected from the group consisting of taxanes, anthracyclines, camptothecins, epothilones, mytomycins, combretastatins, vinca alkaloids, maytansinoids, enediynes such as calicheamicins, duocarmycins, tubulysins, amatoxins, bleomycins, dolastatins and auristatins, pyrrolobenzodiazepine dimers, indolinobenzodiazepine dimers, radioisotopes, therapeutic proteins and peptides (or fragments thereof), kinase inhibitors, MEK inhibitors, KSP inhibitors, and analogues or prodrugs thereof. These antibody-conjugates exhibit an improved therapeutic index. The invention further concerns a process for preparing the antibody-conjugate according to the invention, a method for targeting Trop-2-expressing cells, medical uses of the antibody-conjugates according to the invention.

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment

46.

Sulfamide linkers for use in bioconjugates

      
Application Number 17135703
Grant Number 11957763
Status In Force
Filing Date 2020-12-28
First Publication Date 2021-11-18
Grant Date 2024-04-16
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Berkel, Sander Sebastiaan
  • Heesbeen, Ryan
  • Verkade, Jorge Merijn Mathieu
  • Wijdeven, Maria Antonia
  • Van Delft, Floris Louis

Abstract

The invention relates to a novel linker for use in bioconjugates such as antibody-drug-conjugates. The linker according to the invention is represented by formula: 2 are connecting groups. The linker according to the invention is useful in the preparation of linker-conjugates and bioconjugates, and can be used for (a) improving conjugation efficiency in the preparation of the bioconjugate, (b) reducing aggregation during the preparation of the bioconjugate and/or of the bioconjugate, (c) increasing stability of the bioconjugate, and/or (d) increasing therapeutic index of the bioconjugate.

IPC Classes  ?

  • C07K 14/00 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof
  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • C07K 14/435 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from animalsPeptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from humans
  • C07K 16/32 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against translation products from oncogenes

47.

Enzymes for trimming of glycoproteins

      
Application Number 17113975
Grant Number 11713453
Status In Force
Filing Date 2020-12-07
First Publication Date 2021-10-28
Grant Date 2023-08-01
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Geel, Remon
  • Wijdeven, Maria Antonia
  • Hurkmans, Inge Catharina Josephina
  • Van Delft, Floris Louis
  • Van Berkel, Sander Sebastiaan

Abstract

p-EndoY (1), wherein EndoX is an endoglycosidase, EndoY is an endoglycosidase distinct from EndoX, L is a linker and p is 0 or 1. Such fusion enzymes capable of trimming glycoproteins comprising at least two distinct glycoforms in a single step. The invention further concerns the use of the fusion enzyme according to the invention for trimming glycoproteins. In another aspect, the invention relates to the process of production of the fusion enzyme. In a further aspect, the inventions concerns a process for trimming glycoproteins, comprising trimming the glycoprotein with a fusion enzyme according to the invention, to obtain a trimmed glycoprotein.

IPC Classes  ?

  • C12N 9/24 - Hydrolases (3.) acting on glycosyl compounds (3.2)
  • A61K 47/54 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic compound
  • C07K 1/13 - Labelling of peptides
  • C07K 16/18 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 15/62 - DNA sequences coding for fusion proteins
  • C12N 15/66 - General methods for inserting a gene into a vector to form a recombinant vector using cleavage and ligationUse of non-functional linkers or adaptors, e.g. linkers containing the sequence for a restriction endonuclease
  • C12P 21/00 - Preparation of peptides or proteins

48.

VIA CYCLOADDITION BILATERALLY FUNCTIONALIZED ANTIBODIES

      
Application Number EP2021050594
Publication Number 2021/144313
Status In Force
Filing Date 2021-01-13
Publication Date 2021-07-22
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Delft, Floris Louis
  • Hoogenboom, Jorin
  • Popal, Sorraya
  • Van Schaik, Arnoldus Jacobus
  • De Bever, Laureen
  • Van Geel, Remon
  • Wijdeven, Maria Antonia
  • Van Berkel, Sander Sebastiaan

Abstract

The present invention provides antibody-payload conjugates having a payload-to-antibody ratio of 1. The antibody-payload conjugate having structure (1): Formula (1) wherein: - a, b and c are each independently 0 or 1; - L1, L2and L3 are linkers; - D is a payload; - BM is a branching moiety; - Z are connecting groups obtainable by a cycloaddition reaction. The invention further provides a method for preparing the antibody-payload conjugate according to the invention, an intermediate compound in that preparation method, and medical uses of the antibody-payload conjugate according to the invention.

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61K 47/64 - Drug-peptide, drug-protein or drug-polyamino acid conjugates, i.e. the modifying agent being a peptide, protein or polyamino acid which is covalently bonded or complexed to a therapeutically active agent
  • A61P 35/00 - Antineoplastic agents

49.

VIA CYCLOADDITION BILATERALLY FUNCTIONALIZED ANTIBODIES

      
Application Number EP2021050598
Publication Number 2021/144314
Status In Force
Filing Date 2021-01-13
Publication Date 2021-07-22
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Delft, Floris Louis
  • Hoogenboom, Jorin
  • Popal, Sorraya
  • Van Schaik, Arnoldus Jacobus
  • De Bever, Laureen
  • Van Geel, Remon
  • Wijdeven, Maria Antonia
  • Van Berkel, Sander Sebastiaan

Abstract

The present invention provides antibody-payload conjugates having a payload-to-antibody ratio of 1. The antibody-payload conjugate is according to structure (1): formula (1), wherein: - a, b, c and d are each independently 0 or 1; - e is an integer in the range of 0 - 10; - L1, L2and L3NN-acetylglucosamine moiety; - Fuc is a fucose moiety; - Z are connecting groups. The invention further provides a method for preparing the antibody-payload conjugate according to the invention, an intermediate compound in that preparation method, and medical uses of the antibody-payload conjugate according to the invention.

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61K 47/64 - Drug-peptide, drug-protein or drug-polyamino acid conjugates, i.e. the modifying agent being a peptide, protein or polyamino acid which is covalently bonded or complexed to a therapeutically active agent
  • A61P 35/00 - Antineoplastic agents

50.

CONJUGATES OF ANTIBODIES AN IMMUNE CELL ENGAGERS

      
Application Number EP2021050599
Publication Number 2021/144315
Status In Force
Filing Date 2021-01-13
Publication Date 2021-07-22
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Geel, Remon
  • Vugs, Willem Johannes Petrus
  • Van Berkel, Sander Sebastiaan
  • Van Delft, Floris Louis

Abstract

xx containing x reactive moieties F, wherein x is an integer in the range 1 – 10, and an immune cell-engaging polypeptide containing one or two reactive moieties Q, wherein the antibody is specific for a tumour cell and the immune cell-engaging polypeptide is specific for an immune cell, wherein the reaction forms a covalent linkage between the functionalized antibody and the immune cell-engaging polypeptide by reaction of Q with F. The invention further concerns the multispecific antibody constructs obtainable by the process according to the invention and medical uses thereof.

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61P 35/00 - Antineoplastic agents

51.

Modified antibody, antibody-conjugate and process for the preparation thereof

      
Application Number 16921528
Grant Number 12194107
Status In Force
Filing Date 2020-07-06
First Publication Date 2021-06-03
Grant Date 2025-01-14
Owner Synaffix B.V. (Netherlands)
Inventor
  • Van Delft, Floris Louis
  • Van Geel, Remon
  • Wijdeven, Maria Antonia

Abstract

x substituent, and wherein said N-acetylglucosamine is optionally fucosylated. b), wherein AB is an antibody, S is a sugar or a sugar derivative, D is a molecule of interest, and wherein said N-acetylglucosamine is optionally fucosylated (b is 0 or 1). The invention further relates to a process for the preparation of a modified antibody, to a process for the preparation of an antibody-conjugate, and to said antibody-conjugate for use as a medicament. In addition, the invention relates to a kit of parts comprising an azide-modified antibody and a linker-conjugate, wherein said linker-conjugate comprises a (hetero)cycloalkynyl group and one or more molecules of interest.

IPC Classes  ?

  • C07K 16/30 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants from tumour cells
  • A61K 47/61 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic macromolecular compound, e.g. an oligomeric, polymeric or dendrimeric molecule the organic macromolecular compound being a polysaccharide or a derivative thereof
  • A61K 47/65 - Peptidic linkers, binders or spacers, e.g. peptidic enzyme-labile linkers
  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • C07K 16/22 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against growth factors
  • C07K 16/28 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
  • C07K 16/32 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against translation products from oncogenes
  • C12P 21/02 - Preparation of peptides or proteins having a known sequence of two or more amino acids, e.g. glutathione
  • A61K 39/00 - Medicinal preparations containing antigens or antibodies

52.

Sulfamide linker, conjugates thereof, and methods of preparation

      
Application Number 17063537
Grant Number 11850286
Status In Force
Filing Date 2020-10-05
First Publication Date 2021-02-04
Grant Date 2023-12-26
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Verkade, Jorge Merijn Mathieu
  • Wijdeven, Maria Antonia
  • Van De Sande, Petrus Josephus Jacobus Maria
  • Van Berkel, Sander Sebastiaan
  • Van Delft, Floris Louis

Abstract

1 present on a biomolecule and on the omega-end a target molecule, the compound further comprising a group according to formula (1) or a salt thereof: 1 of a biomolecule. The invention further relates to a bioconjugate obtainable by the process according to the invention.

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • C07K 16/32 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against translation products from oncogenes

53.

N-ACETYL-HEXOSAMINE-NUCLEOSIDE DIPHOSPHATE

      
Application Number NL2020050488
Publication Number 2021/015622
Status In Force
Filing Date 2020-07-27
Publication Date 2021-01-28
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Hoogenboom, Jorin
  • Wijdeven, Maria Antonia
  • Verkade, Jorge Merijn Mathieu
  • Van Delft, Floris Louis
  • Van Berkel, Sander Sebastiaan

Abstract

NNNN-acetyl-D-glucosamine-nucleoside diphosphate. The synthesis method according to the invention is characterized by being highly efficient and high yielding. Also part of the present invention are key intermediates of this process.

IPC Classes  ?

  • C07H 1/00 - Processes for the preparation of sugar derivatives
  • C07H 1/04 - Introducing polyphosphoric acid radicals
  • C07H 5/04 - Compounds containing saccharide radicals in which the hetero bonds to oxygen have been replaced by the same number of hetero bonds to halogen, nitrogen, sulfur, selenium, or tellurium to nitrogen
  • C07H 9/00 - Compounds containing a hetero ring sharing at least two hetero atoms with a saccharide radical
  • C07H 9/06 - Compounds containing a hetero ring sharing at least two hetero atoms with a saccharide radical the hetero ring containing nitrogen as ring hetero atoms
  • C07H 11/04 - PhosphatesPhosphitesPolyphosphates

54.

ACETAL-BASED CLEAVABLE LINKERS

      
Application Number EP2020065395
Publication Number 2020/245229
Status In Force
Filing Date 2020-06-03
Publication Date 2020-12-10
Owner SYNAFFIX B.V. (Netherlands)

Abstract

The current invention concerns compounds, such as antibody-conjugates, with an enhanced selectivity of payload release inside a tumour or in the tumour microenvironment versus payload release in circulation or in healthy cells. The enhanced selectivity is achieved by incorporation of a cleavable linker that requires two consecutive mechanisms for release of the payload. The compounds according to the invention have structure (1) or a salt thereof, wherein AB is an antibody or a reactive moiety capable of reacting with a functional group on an antibody, L1 and L2 are linkers, moiety I contains an activating group and an aromatic ring, X is O or N and D is the payload. The invention further concerns application of these compounds in for example a method of targeting a cell and a method for enhancing the bystander effect of an amino-containing payload. The invention also concerns the payloads that may be released from the compounds according to the invention.

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61P 35/00 - Antineoplastic agents

55.

ANTIBODY-CONJUGATES FOR TARGETING OF TUMOURS EXPRESSING TROP-2

      
Application Number EP2019080295
Publication Number 2020/094670
Status In Force
Filing Date 2019-11-05
Publication Date 2020-05-14
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Wijdeven, Maria Antonia
  • Verkade, Jorge Merijn Mathieu
  • Hoogenboom, Jorin
  • Van Berkel, Sander Sebastiaan
  • Van Delft, Floris Louis
  • Van De Sande, Petrus Josephus Jacobus Maria

Abstract

The present invention concerns antibody-conjugate having general structure (2): AB–[(L 6)–{Z–(L 1) n –(L 2) o –(L 3) p –(L 4) q –D} xx ] yy (2) wherein AB is an antibody capable of targeting Trop-2-expressing tumours and D is selected from the group consisting of taxanes, anthracyclines, camptothecins, epothilones, mytomycins, combretastatins, vinca alkaloids, maytansinoids, enediynes such as calicheamicins, duocarmycins, tubulysins, amatoxins, bleomycins, dolastatins and auristatins, pyrrolobenzodiazepine dimers, indolinobenzodiazepine dimers, radioisotopes, therapeutic proteins and peptides (or fragments thereof), kinase inhibitors, MEK inhibitors, KSP inhibitors, and analogues or prodrugs thereof. These antibody-conjugates exhibit an improved therapeutic index. The invention further concerns a process for preparing the antibody-conjugate according to the invention, a method for targeting Trop-2-expressing cells, medical uses of the antibody-conjugates according to the invention.

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61P 35/00 - Antineoplastic agents

56.

Fused cyclooctyne compounds and their use in metal-free click reactions

      
Application Number 16358272
Grant Number 11358921
Status In Force
Filing Date 2019-03-19
First Publication Date 2020-02-13
Grant Date 2022-06-14
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Delft, Floris Louis
  • Rutjes, Floris Petrus Johannes Theodorus
  • Dommerholt, Frederik Jan

Abstract

The invention relates to fused cyclooctyne compounds, and to a method for their preparation. The invention also relates to a conjugate wherein a fused cyclooctyne compound according to the invention is conjugated to a label, and to the use of these conjugates in bioorthogonal labeling, imaging and/or modification, such as for example surface modification, of a target molecule. The invention further relates to a method for the modification of a target molecule, wherein a conjugate according to the invention is reacted with a compound comprising a 1,3-dipole or a 1,3-(hetero)diene.

IPC Classes  ?

  • C07D 249/16 - Heterocyclic compounds containing five-membered rings having three nitrogen atoms as the only ring hetero atoms condensed with carbocyclic rings or ring systems
  • C07D 261/20 - Heterocyclic compounds containing 1,2-oxazole or hydrogenated 1,2-oxazole rings condensed with carbocyclic rings or ring systems
  • A61K 47/54 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic compound
  • A61K 49/00 - Preparations for testing in vivo
  • G01N 33/58 - Chemical analysis of biological material, e.g. blood, urineTesting involving biospecific ligand binding methodsImmunological testing involving labelled substances
  • G01N 33/532 - Production of labelled immunochemicals
  • C07C 33/16 - Alcohols containing rings other than six-membered aromatic rings containing rings with more than six ring members
  • C07C 29/147 - Preparation of compounds having hydroxy or O-metal groups bound to a carbon atom not belonging to a six-membered aromatic ring by reduction of an oxygen-containing functional group of C=O containing groups, e.g. —COOH of carboxylic acids or derivatives thereof
  • C07C 29/58 - Preparation of compounds having hydroxy or O-metal groups bound to a carbon atom not belonging to a six-membered aromatic ring by elimination of halogen, e.g. by hydrogenolysis, splitting-off
  • C07C 29/62 - Preparation of compounds having hydroxy or O-metal groups bound to a carbon atom not belonging to a six-membered aromatic ring by introduction of halogenPreparation of compounds having hydroxy or O-metal groups bound to a carbon atom not belonging to a six-membered aromatic ring by substitution of halogen atoms by other halogen atoms
  • C07C 67/347 - Preparation of carboxylic acid esters by modifying the acid moiety of the ester, such modification not being an introduction of an ester group by isomerisationPreparation of carboxylic acid esters by modifying the acid moiety of the ester, such modification not being an introduction of an ester group by change of size of the carbon skeleton by increase in the number of carbon atoms by addition to unsaturated carbon-to-carbon bonds
  • C07C 271/12 - Esters of carbamic acids having oxygen atoms of carbamate groups bound to acyclic carbon atoms with the nitrogen atoms of the carbamate groups bound to hydrogen atoms or to acyclic carbon atoms to hydrogen atoms or to carbon atoms of unsubstituted hydrocarbon radicals
  • C07C 62/30 - Unsaturated compounds
  • C07C 269/06 - Preparation of derivatives of carbamic acid, i.e. compounds containing any of the groups the nitrogen atom not being part of nitro or nitroso groups by reactions not involving the formation of carbamate groups
  • C07C 271/20 - Esters of carbamic acids having oxygen atoms of carbamate groups bound to acyclic carbon atoms with the nitrogen atoms of the carbamate groups bound to hydrogen atoms or to acyclic carbon atoms to carbon atoms of hydrocarbon radicals substituted by nitrogen atoms not being part of nitro or nitroso groups
  • C07D 311/82 - Xanthenes
  • C07D 495/04 - Ortho-condensed systems
  • C07K 14/47 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from animalsPeptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from humans from vertebrates from mammals
  • G01N 21/64 - FluorescencePhosphorescence

57.

Bioconjugates containing sulfamide linkers for use in treatment

      
Application Number 16076279
Grant Number 11951175
Status In Force
Filing Date 2017-02-08
First Publication Date 2019-08-29
Grant Date 2024-04-09
Owner Synaffix B.V. (Netherlands)
Inventor
  • Verkade, Jorge Merijn Mathieu
  • Wijdeven, Maria Antonia
  • Van De Sande, Petrus Josephus Jacobus Maria
  • Van Geel, Remon
  • Van Delft, Floris Louis
  • Van Berkel, Sander Sebastiaan

Abstract

The present invention is based on the surprising finding that the linker employed in a bioconjugate, such as an anti-body-drug conjugate, is not therapeutically inert but has an effect on the therapeutic index of the bioconjugate. The present invention thus concerns a method for increasing the therapeutic index of a bioconjugate and the bioconjugates for use in treatment, in particular cancer. The bioconjugates according to the invention have a sulfamide linker comprising a group according to formula (1).

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61K 47/54 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic compound
  • A61K 47/66 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being a protein, peptide or polyamino acid the modifying agent being a pre-targeting system involving a peptide or protein for targeting specific cells
  • A61P 35/00 - Antineoplastic agents
  • C07K 14/435 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from animalsPeptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from humans

58.

Antibody-conjugates with improved therapeutic index for targeting CD30 tumours and method for improving therapeutic index of antibody-conjugates

      
Application Number 16076281
Grant Number 11590239
Status In Force
Filing Date 2017-02-08
First Publication Date 2019-08-29
Grant Date 2023-02-28
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Berkel, Sander Sebastiaan
  • Verkade, Jorge Merijn Mathieu
  • Wijdeven, Maria Antonia
  • Heesbeen, Ryan
  • Van De Sande, Petrus Josephus Jacobus Maria
  • Gvan Eel, Remon
  • Janssen, Brian Maria Gerardus
  • Hurkmans, Inge Catharina Josephina
  • Van Delft, Floris Louis

Abstract

1. The invention also relates to a use for improving the therapeutic index of an antibody-conjugate and to a method for targeting CD30-expressing cells.

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61K 38/07 - Tetrapeptides
  • C07K 16/30 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants from tumour cells
  • A61K 47/65 - Peptidic linkers, binders or spacers, e.g. peptidic enzyme-labile linkers
  • A61K 47/54 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic compound
  • A61K 47/59 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic macromolecular compound, e.g. an oligomeric, polymeric or dendrimeric molecule obtained otherwise than by reactions only involving carbon-to-carbon unsaturated bonds, e.g. polyureas or polyurethanes
  • A61P 35/02 - Antineoplastic agents specific for leukemia
  • A61K 47/34 - Macromolecular compounds obtained otherwise than by reactions only involving carbon-to-carbon unsaturated bonds, e.g. polyesters, polyamino acids, polysiloxanes, polyphosphazines, copolymers of polyalkylene glycol or poloxamers
  • A61K 47/42 - ProteinsPolypeptidesDegradation products thereofDerivatives thereof, e.g. albumin, gelatin or zein
  • C07K 16/32 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against translation products from oncogenes
  • C07K 16/28 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
  • A61K 45/06 - Mixtures of active ingredients without chemical characterisation, e.g. antiphlogistics and cardiaca
  • A61K 39/00 - Medicinal preparations containing antigens or antibodies

59.

Antibody-conjugates with improved therapeutic index for targeting HER2 tumours and method for improving therapeutic index of antibody-conjugates

      
Application Number 16076293
Grant Number 11338043
Status In Force
Filing Date 2017-02-08
First Publication Date 2019-08-29
Grant Date 2022-05-24
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Berkel, Sander Sebastiaan
  • Verkade, Jorge Merijn Mathieu
  • Wijdeven, Maria Antonia
  • Heesbeen, Ryan
  • Van De Sande, Petrus Josephus Jacobus Maria
  • Van Geel, Remon
  • Janssen, Brian Maria Gerardus
  • Hurkmans, Inge Catharina Josephina
  • Van Delft, Floris Louis

Abstract

1. The invention also relates to a use for improving the therapeutic index of an antibody-conjugate and to a method for targeting HER2-expressing cells.

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61K 38/07 - Tetrapeptides
  • C07K 16/30 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants from tumour cells
  • A61K 47/65 - Peptidic linkers, binders or spacers, e.g. peptidic enzyme-labile linkers
  • A61K 47/54 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic compound
  • A61K 47/59 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic macromolecular compound, e.g. an oligomeric, polymeric or dendrimeric molecule obtained otherwise than by reactions only involving carbon-to-carbon unsaturated bonds, e.g. polyureas or polyurethanes
  • A61P 35/02 - Antineoplastic agents specific for leukemia
  • A61K 47/34 - Macromolecular compounds obtained otherwise than by reactions only involving carbon-to-carbon unsaturated bonds, e.g. polyesters, polyamino acids, polysiloxanes, polyphosphazines, copolymers of polyalkylene glycol or poloxamers
  • A61K 47/42 - ProteinsPolypeptidesDegradation products thereofDerivatives thereof, e.g. albumin, gelatin or zein
  • C07K 16/32 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against translation products from oncogenes
  • C07K 16/28 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
  • A61K 45/06 - Mixtures of active ingredients without chemical characterisation, e.g. antiphlogistics and cardiaca
  • A61K 39/00 - Medicinal preparations containing antigens or antibodies

60.

ENEDIYNE CONJUGATES

      
Application Number EP2018083775
Publication Number 2019/110725
Status In Force
Filing Date 2018-12-06
Publication Date 2019-06-13
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Verkade, Jorge Merijn Mathieu
  • Hoogenboom, Jorin
  • Van Berkel, Maria Antonia
  • Van Delft, Floris Louis

Abstract

The invention relates to compounds of general structure (1 ): Q-(L1nn-(L2oo-(L3pp-(L4qq-D, wherein Q is a click probe; D is a cytotoxin containing an enediyne moiety; L1, L2, L3and L4are each individually linkers that together link Q to D; n, o, p and q are each individually 0 or 1, provided that n + o + p + q = 1, 2, 3 or 4, wherein D comprises a functional moiety (21), wherein R121-31-3-alkyl, the wavy line indicates the connection to the remainder of the cytotoxin, and wherein D is conjugated to (L4qq by replacing the amine H atom, and to conjugates obtainable by reacting the compound according to the invention with a protein comprising a click probe F capable of reacting with click probe Q in a click reaction. The invention further relates to a bioconjugate according to general structure (2): Pr-[(L6)-Z-(L1nn-(L2oo-(L3pp-(L4qxxxx, wherein Z is a connecting group that is formed in a click reaction, L6is a linker that links Z to Pr and Pr is a (glyco)protein.

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61P 35/00 - Antineoplastic agents

61.

Enzymes for trimming of glycoproteins

      
Application Number 16076319
Grant Number 10858641
Status In Force
Filing Date 2017-02-08
First Publication Date 2019-02-07
Grant Date 2020-12-08
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Geel, Remon Van
  • Wijdeven, Maria Antonia
  • Hurkmans, Inge Catharina Josephina
  • Van Delft, Floris Louis
  • Van Berkel, Sander Sebastiaan

Abstract

p-EndoY (1), wherein EndoX is an endoglycosidase, EndoY is an endoglycosidase distinct from EndoX, L is a linker and p is 0 or 1. Such fusion enzymes capable of trimming glycoproteins comprising at least two distinct glycoforms in a single step. The invention further concerns the use of the fusion enzyme according to the invention for trimming glycoproteins. In another aspect, the invention relates to the process of production of the fusion enzyme. In a further aspect, the inventions concerns a process for trimming glycoproteins, comprising trimming the glycoprotein with a fusion enzyme according to the invention, to obtain a trimmed glycoprotein.

IPC Classes  ?

  • C12N 9/24 - Hydrolases (3.) acting on glycosyl compounds (3.2)
  • A61K 47/54 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic compound
  • C07K 1/13 - Labelling of peptides
  • C07K 16/18 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 15/62 - DNA sequences coding for fusion proteins
  • C12N 15/66 - General methods for inserting a gene into a vector to form a recombinant vector using cleavage and ligationUse of non-functional linkers or adaptors, e.g. linkers containing the sequence for a restriction endonuclease
  • C12P 21/00 - Preparation of peptides or proteins

62.

Sulfamide linkers for use in bioconjugates

      
Application Number 16076310
Grant Number 10874746
Status In Force
Filing Date 2017-02-08
First Publication Date 2019-02-07
Grant Date 2020-12-29
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Berkel, Sander Sebastiaan
  • Heesbeen, Ryan
  • Verkade, Jorge Merijn Mathieu
  • Wijdeven, Maria Antonia
  • Van Delft, Floris Louis

Abstract

2 are connecting groups. The linker according to the invention is useful in the preparation of linker-conjugates and bioconjugates, and can be used for (a) improving conjugation efficiency in the preparation of the bioconjugate, (b) reducing aggregation during the preparation of the bioconjugate and/or of the bioconjugate, (c) increasing stability of the bioconjugate, and/or (d) increasing therapeutic index of the bioconjugate.

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • C07K 14/435 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from animalsPeptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from humans
  • C07K 14/00 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof
  • C07K 16/32 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against translation products from oncogenes

63.

Process for the modification of a glycoprotein using a glycosyltransferase that is or is derived from a β(1,4)-n-acetylgalactosaminyltransferase

      
Application Number 15971233
Grant Number 11299759
Status In Force
Filing Date 2018-05-04
First Publication Date 2018-08-30
Grant Date 2022-04-12
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Berkel, Sander Sebastiaan
  • Van Geel, Remon
  • Wijdeven, Maria Antonia
  • Van Delft, Floris Louis

Abstract

The present invention relates to a process for the enzymatic modification of a glycoprotein. The process comprises the step of contacting a glycoprotein comprising a glycan comprising a terminal GlcNAc-moiety, in the presence of glycosyltransferase that is, or is derived from, a β-(1,4)-N-acetylgalactosaminyltransferase, with a non-natural sugar-derivative nucleotide. The non-natural sugar-derivative nucleotide is according to formula (3): 24 allenyl groups and amino groups. The invention further relates to a glycoprotein obtainable by the process according to the invention, to a bioconjugate that can be obtained by conjugating the glycoprotein with a linker-conjugate, and to β-(1,4)-N-acetylgalactosaminyltransferases that can be used in preparing the glycoprotein according to the invention.

IPC Classes  ?

  • C12P 21/00 - Preparation of peptides or proteins
  • C12N 9/10 - Transferases (2.)
  • C07K 16/28 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
  • C07K 16/32 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against translation products from oncogenes
  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61K 47/61 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic macromolecular compound, e.g. an oligomeric, polymeric or dendrimeric molecule the organic macromolecular compound being a polysaccharide or a derivative thereof
  • A61K 47/64 - Drug-peptide, drug-protein or drug-polyamino acid conjugates, i.e. the modifying agent being a peptide, protein or polyamino acid which is covalently bonded or complexed to a therapeutically active agent

64.

TOXSYN

      
Application Number 017556416
Status Registered
Filing Date 2017-12-05
Registration Date 2018-03-26
Owner Synaffix B.V. (Netherlands)
NICE Classes  ?
  • 01 - Chemical and biological materials for industrial, scientific and agricultural use
  • 05 - Pharmaceutical, veterinary and sanitary products
  • 42 - Scientific, technological and industrial services, research and design
  • 44 - Medical, veterinary, hygienic and cosmetic services; agriculture, horticulture and forestry services

Goods & Services

Reagents and bioactive compounds, being peptides, proteins, glycans, nucleotides, lipids and any other organic compound that is synthesized by a living organism, for industrial and scientific use. Pharmaceuticals for the in vivo treatment of a disease in patients. Chemical and biological engineering of biological molecules, with a focus on chemical and enzymatic modification of proteins. Medical analysis for the diagnosis and treatment of a condition in patients in the nature of medical advisory services.

65.

TOXSYN

      
Serial Number 87708622
Status Registered
Filing Date 2017-12-05
Registration Date 2019-02-19
Owner Synaffix B.V. (Netherlands)
NICE Classes  ? 44 - Medical, veterinary, hygienic and cosmetic services; agriculture, horticulture and forestry services

Goods & Services

Medical analysis for the diagnosis and treatment of a condition in patients in the nature of medical advisory services

66.

Sulfamide linker, conjugates thereof, and methods of preparation

      
Application Number 15581226
Grant Number 10792369
Status In Force
Filing Date 2017-04-28
First Publication Date 2017-10-19
Grant Date 2020-10-06
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Verkade, Jorge Merijn Mathieu
  • Wijdeven, Maria Antonia
  • Van De Sande, Petrus Josephus Jacobus Maria
  • Van Berkel, Sander Sebastiaan
  • Van Delft, Floris Louis

Abstract

1 present on a biomolecule and on the omega-end a target molecule, the compound further comprising a group according to formula (1) or a salt thereof: 1 of a biomolecule. The invention further relates to a bioconjugate obtainable by the process according to the invention.

IPC Classes  ?

  • C07K 16/32 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against translation products from oncogenes
  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment

67.

IMPROVED SULFAMIDE LINKERS FOR USE IN BIOCONJUGATES

      
Application Number EP2017052719
Publication Number 2017/137423
Status In Force
Filing Date 2017-02-08
Publication Date 2017-08-17
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Berkel, Sander Sebastiaan
  • Heesbeen, Ryan
  • Verkade, Jorge Merijn Mathieu
  • Wijdeven, Maria Antonia
  • Van Delft, Floris Louis

Abstract

The invention relates to a novel linker for use in bioconjugates such as antibody-drug-conjugates. The linker according to the invention is represented by formula: (I) wherein: - BM is a branching moiety; - E is a capping group; - SG is a sulfamide group; - b, c, d, e, g, i, k, I are independently 0 or 1; - f is an integer in the range of 1 to 10; - Sp1, Sp2, Sp3, Sp4, Sp5 and Sp6 are a spacer moieties; - Z1 and Z2 are connecting groups. The linker according to the invention is useful in the preparation of linker-conjugates and bioconjugates, and can be used for (a) improving conjugation efficiency in the preparation of the bioconjugate, (b) reducing aggregation during the preparation of the bioconjugate and/or of the bioconjugate, (c) increasing stability of the bioconjugate, and/or (d) increasing therapeutic index of the bioconjugate.

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • C07K 14/435 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from animalsPeptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from humans
  • A61P 35/00 - Antineoplastic agents

68.

BIOCONJUGATES CONTAINING SULFAMIDE LINKERS FOR USE IN TREATMENT

      
Application Number EP2017052788
Publication Number 2017/137456
Status In Force
Filing Date 2017-02-08
Publication Date 2017-08-17
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Verkade, Jorge Merijn Mathieu
  • Wijdeven, Maria Antonia
  • Van De Sande, Petrus Josephus Jacobus Maria
  • Van Geel, Remon
  • Van Delft, Floris Louis
  • Van Berkel, Sander Sebastiaan

Abstract

The present invention is based on the surprising finding that the linker employed in a bioconjugate, such as an anti-body-drug conjugate, is not therapeutically inert but has an effect on the therapeutic index of the bioconjugate. The present invention thus concerns a method for increasing the therapeutic index of a bioconjugate and the bioconjugates for use in treatment, in particular cancer. The bioconjugates according to the invention have a sulfamide linker comprising a group according to formula (1).

IPC Classes  ?

  • A61K 47/66 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being a protein, peptide or polyamino acid the modifying agent being a pre-targeting system involving a peptide or protein for targeting specific cells
  • C07K 14/435 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from animalsPeptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from humans
  • A61P 35/00 - Antineoplastic agents

69.

ANTIBODY-CONJUGATES WITH IMPROVED THERAPEUTIC INDEX FOR TARGETING HER2 TUMOURS AND METHOD FOR IMPROVING THERAPEUTIC INDEX OF ANTIBODY-CONJUGATES

      
Application Number EP2017052790
Publication Number 2017/137457
Status In Force
Filing Date 2017-02-08
Publication Date 2017-08-17
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Berkel, Sander Sebastiaan
  • Verkade, Jorge Merijn Mathieu
  • Wijdeven, Maria Antonia
  • Heesbeen, Ryan
  • Van De Sande, Petrus Josephus Jacobus Maria
  • Van Geel, Remon
  • Janssen, Brian Maria Gerardus
  • Hurkmans, Inge Catharina Josephina
  • Van Delft, Floris Louis

Abstract

The present invention concerns novel and improved antibody-conjugates for targeting HER2. The inventors found that when antibody-conjugates were prepared using a specific mode of conjugation, they exhibit an improved therapeutic index. The mode of conjugation comprises a first step (i) of contacting a glycoprotein comprising 1 - 4 core N-acetylglucosamine moieties with a compound of the formula S(F1)x-P in the presence of a catalyst, wherein S(F1)x is a sugar derivative comprising x functional groups F1 capable of reacting with a functional group Q1, x is 1 or 2 and P is a nucleoside mono- or diphosphate, and wherein the catalyst is capable of transferring the S(F1)x moiety to the core-GlcNAc moiety, to obtain a modified antibody; and a second step (ii) of reacting the modified antibody with a linker-conjugate comprising a functional group Q1 capable of reacting with functional group F1 and a target molecule D connected to Q1 via a linker L2 to obtain the antibody-conjugate wherein linker L comprises S-Z3-L2 and wherein Z3 is a connecting group resulting from the reaction between Q1 and F1. The invention also relates to a use for improving the therapeutic index of an antibody-conjugate and to a method for targeting HER2-expressing cells.

IPC Classes  ?

  • A61K 47/34 - Macromolecular compounds obtained otherwise than by reactions only involving carbon-to-carbon unsaturated bonds, e.g. polyesters, polyamino acids, polysiloxanes, polyphosphazines, copolymers of polyalkylene glycol or poloxamers
  • A61K 47/42 - ProteinsPolypeptidesDegradation products thereofDerivatives thereof, e.g. albumin, gelatin or zein
  • A61K 47/59 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic macromolecular compound, e.g. an oligomeric, polymeric or dendrimeric molecule obtained otherwise than by reactions only involving carbon-to-carbon unsaturated bonds, e.g. polyureas or polyurethanes
  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61P 35/00 - Antineoplastic agents
  • A61P 35/02 - Antineoplastic agents specific for leukemia

70.

ANTIBODY-CONJUGATES WITH IMPROVED THERAPEUTIC INDEX FOR TARGETING CD30 TUMOURS AND METHOD FOR IMPROVING THERAPEUTIC INDEX OF ANTIBODY-CONJUGATES

      
Application Number EP2017052791
Publication Number 2017/137458
Status In Force
Filing Date 2017-02-08
Publication Date 2017-08-17
Owner Synaffix B.V. (Netherlands)
Inventor
  • Van Berkel, Sander Sebastiaan
  • Verkade, Jorge Merijn Mathieu
  • Wijdeven, Maria Antonia
  • Heesbeen, Ryan
  • Van De Sande, Petrus Josephus Jacobus Maria
  • Van Geel, Remon
  • Janssen, Brian Maria Gerardus
  • Hurkmans, Inge Catharina Josephina
  • Van Delft, Floris Louis

Abstract

The present invention concerns novel and improved antibody-conjugates for targeting CD30. The inventors found that when antibody-conjugates were prepared using a specific mode of conjugation, they exhibit an improved therapeutic index. The mode of conjugation comprises a first step (i) of contacting a glycoprotein comprising 1 - 4 core N-acetylglucosamine moieties with a compound of the formula S(F1)x-P in the presence of a catalyst, wherein S(F1)x is a sugar derivative comprising x functional groups F1 capable of reacting with a functional group Q1, x is 1 or 2 and P is a nucleoside mono- or diphosphate, and wherein the catalyst is capable of transferring the S(F1)X moiety to the core-GlcNAc moiety, to obtain a modified antibody; and a second step (ii) of reacting the modified antibody with a linker-conjugate comprising a functional group Q1 capable of reacting with functional group F1 and a target molecule D connected to Q1 via a linker L2 to obtain the antibody-conjugate wherein linker L comprises S-Z3-L2 and wherein Z3 is a connecting group resulting from the reaction between Q1 and F1. The invention also relates to a use for improving the therapeutic index of an antibody-conjugate and to a method for targeting CD30-expressing cells.

IPC Classes  ?

  • A61K 47/34 - Macromolecular compounds obtained otherwise than by reactions only involving carbon-to-carbon unsaturated bonds, e.g. polyesters, polyamino acids, polysiloxanes, polyphosphazines, copolymers of polyalkylene glycol or poloxamers
  • A61K 47/42 - ProteinsPolypeptidesDegradation products thereofDerivatives thereof, e.g. albumin, gelatin or zein
  • A61K 47/59 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic macromolecular compound, e.g. an oligomeric, polymeric or dendrimeric molecule obtained otherwise than by reactions only involving carbon-to-carbon unsaturated bonds, e.g. polyureas or polyurethanes
  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61P 35/00 - Antineoplastic agents
  • A61P 35/02 - Antineoplastic agents specific for leukemia

71.

ENZYMES FOR TRIMMING OF GLYCOPROTEINS

      
Application Number EP2017052792
Publication Number 2017/137459
Status In Force
Filing Date 2017-02-08
Publication Date 2017-08-17
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Geel, Remon
  • Wijdeven, Maria Antonia
  • Hurkmans, Inge Catharina Josephina
  • Van Delft, Floris Louis
  • Van Berkel, Sander Sebastiaan

Abstract

The invention concerns fusion proteins, wherein two endoglycosidases are fused, possibly via a linker. The fusion enzymes according to the invention have structure (1): EndoX-(L)p-EndoY (1), wherein EndoX is an endoglycosidase, EndoY is an endoglycosidase distinct from EndoX, L is a linker and p is 0 or 1. Such fusion enzymes capable of trimming glycoproteins comprising at least two distinct glycoforms in a single step. The invention further concerns the use of the fusion enzyme according to the invention for trimming glycoproteins. In another aspect, the invention relates to the process of production of the fusion enzyme. In a further aspect, the inventions concerns a process for trimming glycoproteins, comprising trimming the glycoprotein with a fusion enzyme according to the invention, to obtain a trimmed glycoprotein.

IPC Classes  ?

  • C12N 9/24 - Hydrolases (3.) acting on glycosyl compounds (3.2)

72.

Process for the modification of a glycoprotein using a β-(1,4)-N-acetylgalactosaminyl transferase or a mutant thereof

      
Application Number 15501771
Grant Number 11046988
Status In Force
Filing Date 2015-08-04
First Publication Date 2017-08-10
Grant Date 2021-06-29
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Wasiel, Anna Agnieszka
  • Van Delft, Floris Louis
  • Van Berkel, Sander Sebastiaan

Abstract

24 alkenyl group.

IPC Classes  ?

  • C12P 21/00 - Preparation of peptides or proteins
  • C07K 16/32 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against translation products from oncogenes
  • C12N 9/10 - Transferases (2.)
  • C07H 19/10 - Pyrimidine radicals with the saccharide radical being esterified by phosphoric or polyphosphoric acids

73.

Process for the modification of a glycoprotein using a glycosyltransferase that is or is derived from A β(1,4)-N-acetylgalactosaminyltransferase

      
Application Number 15318248
Grant Number 09988661
Status In Force
Filing Date 2016-04-25
First Publication Date 2017-05-11
Grant Date 2018-06-05
Owner SynAffix B.V. (Netherlands)
Inventor
  • Van Berkel, Sander Sebastiaan
  • Van Geel, Remon
  • Wijdeven, Maria Antonia
  • Van Delft, Floris Louis

Abstract

24 allenyl groups and amino groups. The invention further relates to a glycoprotein obtainable by the process according to the invention, to a bioconjugate that can be obtained by conjugating the glycoprotein with a linker-conjugate, and to β-(1,4)-N-acetylgalactosaminyltransferases that can be used in preparing the the glycoprotein according to the invention.

IPC Classes  ?

  • C12P 21/00 - Preparation of peptides or proteins
  • C07K 16/32 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against translation products from oncogenes
  • C07K 16/28 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
  • C12N 9/10 - Transferases (2.)
  • A61K 47/48 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers, inert additives the non-active ingredient being chemically bound to the active ingredient, e.g. polymer drug conjugates

74.

Sulfamide linker, conjugates thereof, and methods of preparation

      
Application Number 15360610
Grant Number 09636421
Status In Force
Filing Date 2016-11-23
First Publication Date 2017-03-16
Grant Date 2017-05-02
Owner Synaffix B.V. (Netherlands)
Inventor
  • Verkade, Jorge Merijn Mathieu
  • Wijdeven, Maria Antonia
  • Van De Sande, Petrus Josephus Jacobus Maria
  • Van Berkel, Sander Sebastiaan
  • Van Delft, Floris Louis

Abstract

1 present on a biomolecule and on the omega-end a target molecule, the compound further comprising a group according to formula (1) or a salt thereof: 1 of a biomolecule. The invention further relates to a bioconjugate obtainable by the process according to the invention.

IPC Classes  ?

  • A61K 31/18 - Sulfonamides
  • A61K 31/175 - Amides, e.g. hydroxamic acids having the group N—C(O)—N or N—C(S)—N, e.g. urea, thiourea, carmustine having the group , N—C(O)—N=N— or , e.g. carbonohydrazides, carbazones, semicarbazides, semicarbazonesThioanalogues thereof
  • C07K 1/13 - Labelling of peptides
  • C07K 1/04 - General processes for the preparation of peptides on carriers
  • A61K 47/48 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers, inert additives the non-active ingredient being chemically bound to the active ingredient, e.g. polymer drug conjugates
  • C07K 16/32 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against translation products from oncogenes

75.

Process for the cycloaddition of a halogenated 1,3-dipole compound with a (hetero)cycloalkyne

      
Application Number 15113751
Grant Number 10266502
Status In Force
Filing Date 2015-01-26
First Publication Date 2017-01-12
Grant Date 2019-04-23
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Delft, Floris Louis
  • Van Geel, Remon
  • Wijdeven, Maria Antonia
  • Heesbeen, Ryan

Abstract

The present invention relates to a cycloaddition process comprising the step of reacting a halogenated aliphatic 1,3-dipole compound with a (hetero)cycloalkyne according to Formula (1): Preferably, the (hetero)cycloalkyne according to Formula (1) is a (hetero)cyclooctyne. The invention also relates to the cycloaddition products obtainable by the process according to the invention. The invention further relates to halogenated aliphatic 1,3-dipole compounds, in particular to halogenated aliphatic 1,3-dipole compounds comprising N-acetylgalactosamine-UDP (GalNAc-UDP), and to halogenated 1,3-dipole compounds comprising (peracylated) N-acetylglucosamine (GlcNAc), N-acetylgalactosamine (GalNAc), N-acetylmannosamine (ManNAc) and N-acetyl neuraminic acid (NeuNAc).

IPC Classes  ?

  • C07D 249/16 - Heterocyclic compounds containing five-membered rings having three nitrogen atoms as the only ring hetero atoms condensed with carbocyclic rings or ring systems
  • C07C 247/04 - Compounds containing azido groups with azido groups bound to acyclic carbon atoms of a carbon skeleton being saturated
  • C07H 19/10 - Pyrimidine radicals with the saccharide radical being esterified by phosphoric or polyphosphoric acids
  • C07C 247/18 - Compounds containing azido groups with azido groups bound to carbon atoms of six-membered aromatic rings of a carbon skeleton being further substituted by carboxyl groups
  • C07C 247/12 - Compounds containing azido groups with azido groups bound to acyclic carbon atoms of a carbon skeleton being further substituted by carboxyl groups
  • C07H 1/00 - Processes for the preparation of sugar derivatives
  • C07H 13/12 - Compounds containing saccharide radicals esterified by carbonic acid or derivatives thereof, or by organic acids, e.g. phosphonic acids by acids having the group —X—C (=X)—X—, or halides thereof, in which X means nitrogen, oxygen, sulfur, selenium, or tellurium, e.g. carbonic acid, carbamic acid
  • C07D 225/02 - Heterocyclic compounds containing rings of more than seven members having one nitrogen atom as the only ring hetero atom not condensed with other rings
  • C07H 19/00 - Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radicalNucleosidesMononucleotidesAnhydro derivatives thereof
  • C07H 13/00 - Compounds containing saccharide radicals esterified by carbonic acid or derivatives thereof, or by organic acids, e.g. phosphonic acids
  • C07D 321/12 - Eight-membered rings
  • C07D 225/08 - Heterocyclic compounds containing rings of more than seven members having one nitrogen atom as the only ring hetero atom condensed with carbocyclic rings or ring systems condensed with two six-membered rings
  • C07K 16/32 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against translation products from oncogenes

76.

Process for the cycloaddition of a hetero(aryl) 1,3-dipole compound with a (hetero)cycloalkyne

      
Application Number 15113730
Grant Number 11168085
Status In Force
Filing Date 2015-01-26
First Publication Date 2017-01-05
Grant Date 2021-11-09
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Delft, Floris Louis
  • Dommerholt, Frederik Jan

Abstract

A process is provided, comprising reacting a (hetero)aryl 1,3-dipole compound with a (hetero)cycloalkyne, wherein the (hetero)aryl 1,3-dipole compound comprises a 1,3-dipole functional group bonded to a (hetero)aryl group, and wherein the (hetero)aryl 1,3-dipole compound is a (hetero)aryl azide or a (hetero)aryl diazo compound; wherein: and wherein the (hetero)cycloalkyne is a (hetero)cyclooctyne or a (hetero)cyclononyne according to Formula (1). The invention also relates to the products obtainable by the process according to the invention.

IPC Classes  ?

  • C07D 487/04 - Ortho-condensed systems
  • C07H 19/10 - Pyrimidine radicals with the saccharide radical being esterified by phosphoric or polyphosphoric acids
  • C07D 225/08 - Heterocyclic compounds containing rings of more than seven members having one nitrogen atom as the only ring hetero atom condensed with carbocyclic rings or ring systems condensed with two six-membered rings
  • C07D 225/02 - Heterocyclic compounds containing rings of more than seven members having one nitrogen atom as the only ring hetero atom not condensed with other rings
  • C07D 231/54 - Heterocyclic compounds containing 1,2-diazole or hydrogenated 1,2-diazole rings condensed with carbocyclic rings or ring systems
  • C07D 261/20 - Heterocyclic compounds containing 1,2-oxazole or hydrogenated 1,2-oxazole rings condensed with carbocyclic rings or ring systems
  • C07D 249/16 - Heterocyclic compounds containing five-membered rings having three nitrogen atoms as the only ring hetero atoms condensed with carbocyclic rings or ring systems
  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61K 47/54 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic compound
  • A61K 47/60 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic macromolecular compound, e.g. an oligomeric, polymeric or dendrimeric molecule obtained otherwise than by reactions only involving carbon-to-carbon unsaturated bonds, e.g. polyureas or polyurethanes the organic macromolecular compound being a polyoxyalkylene oligomer, polymer or dendrimer, e.g. PEG, PPG, PEO or polyglycerol
  • C07C 269/06 - Preparation of derivatives of carbamic acid, i.e. compounds containing any of the groups the nitrogen atom not being part of nitro or nitroso groups by reactions not involving the formation of carbamate groups
  • C07C 271/18 - Esters of carbamic acids having oxygen atoms of carbamate groups bound to acyclic carbon atoms with the nitrogen atoms of the carbamate groups bound to hydrogen atoms or to acyclic carbon atoms to carbon atoms of hydrocarbon radicals substituted by doubly-bound oxygen atoms
  • C07K 14/47 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from animalsPeptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from humans from vertebrates from mammals

77.

PROCESS FOR THE MODIFICATION OF A GLYCOPROTEIN USING A GLYCOSYLTRANSFERASE THAT IS OR IS DERIVED FROM A β(1,4)-N-ACETYLGALACTOSAMINYLTRANSFERASE

      
Application Number EP2016059194
Publication Number 2016/170186
Status In Force
Filing Date 2016-04-25
Publication Date 2016-10-27
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Berkel, Sander Sebastiaan
  • Van Geel, Remon
  • Wijdeven, Maria Antonia
  • Van Delft, Floris Louis

Abstract

The present invention relates to a process for the enzymatic modification of a glycoprotein. The process comprises the step of contacting a glycoprotein comprising a glycan comprising a terminal GlcNAc-moiety, in the presence of glycosyltransferasethat is,or is derived from,a β-(1,4)-N-acetylgalactosaminyltransferase, with anon-natural sugar-derivative nucleotide. Thenon-natural sugar-derivative nucleotide is according to formula (3): wherein A is selected from the group consisting of -N3, -C(O)R3, -(CH2)iC≡C-R4, - SH, -SC(O)R8, -SC(0)OR8, -SC(S)OR8, -F, -CI, -Br -I, -OS(O)2R5, terminal C2 - C24 alkenyl groups, C3 - C5 cycloalkenyl groups, C4 - C8 alkadienyl groups, terminal C3 - C24 allenyl groups and amino groups. The invention further relates to a glycoprotein obtainable by the process according to the invention, to a bioconjugate that can be obtained by conjugating the glycoprotein with a linker-conjugate, and to β-(1,4)-Ν- acetylgalactosaminyltransferases that can be used in preparing the the glycoprotein according to the invention.

IPC Classes  ?

78.

Modified glycoprotein, protein-conjugate and process for the preparation thereof

      
Application Number 15029123
Grant Number 10072096
Status In Force
Filing Date 2014-10-14
First Publication Date 2016-09-29
Grant Date 2018-09-11
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Delft, Floris Louis
  • Van Geel, Remon
  • Wijdeven, Maria Antonia
  • Verkade, Jorge Merijn Mathieu
  • Heesbeen, Ryan

Abstract

The invention relates to a glycoprotein comprising an optionally fucosylated glycan according to formula (105) or (106), wherein Su(A)x is a modified sugar moiety comprising one or more functional groups A. Functional group A is independently selected from the group consisting of a thiol group, a halogen, a sulfonyloxy group, a halogenated acetamido group, a mercaptoacetamido group and a sulfonated hydroxyacetamido group. The invention also relates to a glycoprotein-conjugate wherein a glycoprotein according to the invention is conjugated to a molecule of interest. Said molecule of interest may for example be an active substance. The invention further relates to a process for the preparation of a modified glycoprotein, and to a method for the preparation of a glycoprotein-conjugate. The invention particularly relates to modified antibodies, antibody-conjugates, antibody-drug conjugates and methods for the preparation thereof.

IPC Classes  ?

  • C07K 16/40 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against enzymes
  • C12P 21/00 - Preparation of peptides or proteins
  • C07K 16/32 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against translation products from oncogenes
  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment

79.

Modified glycoprotein, protein-conjugate and process for the preparation thereof

      
Application Number 15028874
Grant Number 09987373
Status In Force
Filing Date 2014-10-14
First Publication Date 2016-09-01
Grant Date 2018-06-05
Owner Synaffix B.V. (Netherlands)
Inventor
  • Van Delft, Floris Louis
  • Van Geel, Remon
  • Wijdeven, Maria Antonia

Abstract

x is a sugar derivative comprising x functional groups A, wherein x is 1, 2, 3 or 4 and A is independently selected from the group consisting of an azido group, a keto group, an alkynyl group, a thiol group, a halogen, a sulfonyloxy group, a halogenated acetamido group, a mercaptoacetamido group and a sulfonylated hydroxyacetamido group. Protein-conjugates having glycoproteins according to the invention conjugated to a molecule of interest (e.g., an active substance) are also disclosed. Examples include modified antibodies, antibody-conjugates, and antibody-drug conjugates (ADCs). Processes for the preparation of the modified glycoproteins according to the invention and methods for the preparation of a protein-conjugate according to the invention are mentioned.

IPC Classes  ?

  • C12P 21/00 - Preparation of peptides or proteins
  • A61K 47/48 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers, inert additives the non-active ingredient being chemically bound to the active ingredient, e.g. polymer drug conjugates
  • C07K 16/32 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against translation products from oncogenes
  • C12P 19/18 - Preparation of compounds containing saccharide radicals produced by the action of a glycosyl transferase, e.g. alpha-, beta- or gamma-cyclodextrins
  • C12N 9/24 - Hydrolases (3.) acting on glycosyl compounds (3.2)
  • A61K 31/702 - Oligosaccharides, i.e. having three to five saccharide radicals attached to each other by glycosidic linkages
  • A61K 39/00 - Medicinal preparations containing antigens or antibodies

80.

Fused cyclooctyne compounds and their use in metal-free click reactions

      
Application Number 14978924
Grant Number 10239807
Status In Force
Filing Date 2015-12-22
First Publication Date 2016-07-28
Grant Date 2019-03-26
Owner SynAffix B.V. (Netherlands)
Inventor
  • Van Delft, Floris Louis
  • Rutjes, Floris Petrus Johannes Theodorus
  • Dommerholt, Frederik Jan

Abstract

The invention relates to fused cyclooctyne compounds, and to a method for their preparation. The invention also relates to a conjugate wherein a fused cyclooctyne compound according to the invention is conjugated to a label, and to the use of these conjugates in bioorthogonal labeling, imaging and/or modification, such as for example surface modification, of a target molecule. The invention further relates to a method for the modification of a target molecule, wherein a conjugate according to the invention is reacted with a compound comprising a 1,3-dipole or a 1,3-(hetero)diene.

IPC Classes  ?

  • C07C 33/16 - Alcohols containing rings other than six-membered aromatic rings containing rings with more than six ring members
  • C07C 271/10 - Esters of carbamic acids having oxygen atoms of carbamate groups bound to acyclic carbon atoms with the nitrogen atoms of the carbamate groups bound to hydrogen atoms or to acyclic carbon atoms
  • C07C 271/20 - Esters of carbamic acids having oxygen atoms of carbamate groups bound to acyclic carbon atoms with the nitrogen atoms of the carbamate groups bound to hydrogen atoms or to acyclic carbon atoms to carbon atoms of hydrocarbon radicals substituted by nitrogen atoms not being part of nitro or nitroso groups
  • C07C 29/147 - Preparation of compounds having hydroxy or O-metal groups bound to a carbon atom not belonging to a six-membered aromatic ring by reduction of an oxygen-containing functional group of C=O containing groups, e.g. —COOH of carboxylic acids or derivatives thereof
  • C07C 29/58 - Preparation of compounds having hydroxy or O-metal groups bound to a carbon atom not belonging to a six-membered aromatic ring by elimination of halogen, e.g. by hydrogenolysis, splitting-off
  • C07C 29/62 - Preparation of compounds having hydroxy or O-metal groups bound to a carbon atom not belonging to a six-membered aromatic ring by introduction of halogenPreparation of compounds having hydroxy or O-metal groups bound to a carbon atom not belonging to a six-membered aromatic ring by substitution of halogen atoms by other halogen atoms
  • C07C 269/04 - Preparation of derivatives of carbamic acid, i.e. compounds containing any of the groups the nitrogen atom not being part of nitro or nitroso groups from amines with formation of carbamate groups
  • C07C 67/347 - Preparation of carboxylic acid esters by modifying the acid moiety of the ester, such modification not being an introduction of an ester group by isomerisationPreparation of carboxylic acid esters by modifying the acid moiety of the ester, such modification not being an introduction of an ester group by change of size of the carbon skeleton by increase in the number of carbon atoms by addition to unsaturated carbon-to-carbon bonds
  • A61K 47/54 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic compound
  • A61K 49/00 - Preparations for testing in vivo
  • G01N 33/58 - Chemical analysis of biological material, e.g. blood, urineTesting involving biospecific ligand binding methodsImmunological testing involving labelled substances
  • G01N 33/532 - Production of labelled immunochemicals
  • C07C 271/12 - Esters of carbamic acids having oxygen atoms of carbamate groups bound to acyclic carbon atoms with the nitrogen atoms of the carbamate groups bound to hydrogen atoms or to acyclic carbon atoms to hydrogen atoms or to carbon atoms of unsubstituted hydrocarbon radicals
  • C07C 62/30 - Unsaturated compounds
  • C07C 269/06 - Preparation of derivatives of carbamic acid, i.e. compounds containing any of the groups the nitrogen atom not being part of nitro or nitroso groups by reactions not involving the formation of carbamate groups
  • C07D 311/82 - Xanthenes
  • C07D 495/04 - Ortho-condensed systems
  • C07K 14/47 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from animalsPeptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from humans from vertebrates from mammals
  • G01N 21/64 - FluorescencePhosphorescence

81.

CONNECT TO CURE

      
Application Number 1297495
Status Registered
Filing Date 2016-01-21
Registration Date 2016-01-21
Owner Synaffix B.V. (Netherlands)
NICE Classes  ?
  • 01 - Chemical and biological materials for industrial, scientific and agricultural use
  • 05 - Pharmaceutical, veterinary and sanitary products
  • 42 - Scientific, technological and industrial services, research and design
  • 44 - Medical, veterinary, hygienic and cosmetic services; agriculture, horticulture and forestry services

Goods & Services

Reagents and bioactive compounds, being peptides, proteins, glycans, nucleotides, lipids and any other organic compound that is synthesized by a living organism, for industrial and scientific use. Pharmaceuticals for the in vivo treatment of a disease in patients. Chemical and biological engineering of biological molecules, with a focus on chemical and enzymatic modification of proteins. Medical analysis for the diagnosis and treatment of a condition in patients in the nature of medical advisory services.

82.

SULFAMIDE LINKER, CONJUGATES THEREOF, AND METHODS OF PREPARATION

      
Application Number NL2015050697
Publication Number 2016/053107
Status In Force
Filing Date 2015-10-05
Publication Date 2016-04-07
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Verkade, Jorge Merijn Mathieu
  • Wijdeven, Maria Antonia
  • Van De Sande, Petrus Josephus Jacobus Maria
  • Van Berkel, Sander Sebastiaan
  • Van Delft, Floris Louis

Abstract

The present invention relates to a compound comprising an alpha-end and an omega-end, the compound comprising on the alpha-end a reactive group Qlcapable of reacting with a functional group F1present on a biomolecule and on the omega-end a target molecule, the compound further comprising a group according to formula (1) or a salt thereof: Said compound may also be referred to as a linker-conjugate. The invention also relates to a process for the preparation of a bioconjugate, the process comprising the step of reacting a reactive group Q1of a linker-conjugate according to the invention with a functional group F1of a biomolecule. The invention further relates to a bioconjugate obtainable by the process according to the invention. In a preferred embodiment, the invention concerns a process for the preparation of a bioconjugate via a cycloaddition, such as a (4+2)-cycloaddition (e.g. a Diels-Alder reaction) or a (3+2)-cycloaddition (e.g. a 1,3-dipolar cycloaddition).

IPC Classes  ?

  • A61K 47/48 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers, inert additives the non-active ingredient being chemically bound to the active ingredient, e.g. polymer drug conjugates

83.

PROCESS FOR THE MODIFICATION OF A GLYCOPROTEIN USING A ΒETA-(1,4)-N-ACETYLGALACTOSAMINYLTRANSFERASE OR A MUTANT THEREOF

      
Application Number NL2015050567
Publication Number 2016/022027
Status In Force
Filing Date 2015-08-04
Publication Date 2016-02-11
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Wasiel, Anna Agnieszka
  • Van Delft, Floris Louis
  • Van Berkel, Sander Sebastiaan

Abstract

The present invention relates to a process for the modification of a glycoprotein, using a β-(1,4)-N-acetylgalactosaminyltransferase or a mutant thereof.The process comprisesthe step of contacting a glycoprotein comprising a glycan comprising a terminal GlcNAc-moiety, in the presence of a β-(1,4)-N-acetylgalactosaminyl- transferase or a mutant thereof, with anon-natural sugar-derivative nucleotide.The non-natural sugar-derivative nucleotideis according to formula (3), wherein A is selected from the group consisting of -N3; -C(0)R3; -C=C-R4; -SH; -SC(0)R8; -SC(V)OR8, wherein V is O or S; -X wherein X is selected from the group consisting of F, CI, Br and I; -OS(0)2R5; an optionally substituted C2 - C24 alkyl group; an optionally substituted terminal C2 - C24 alkenyl group; and an optionally substituted terminal C3 - C24 allenyl group.

IPC Classes  ?

  • C07H 19/10 - Pyrimidine radicals with the saccharide radical being esterified by phosphoric or polyphosphoric acids
  • C07K 16/00 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies
  • C12P 21/00 - Preparation of peptides or proteins

84.

CONNECT TO CURE

      
Serial Number 79186709
Status Registered
Filing Date 2016-01-21
Registration Date 2016-11-01
Owner Synaffix B.V. (Netherlands)
NICE Classes  ?
  • 01 - Chemical and biological materials for industrial, scientific and agricultural use
  • 05 - Pharmaceutical, veterinary and sanitary products
  • 42 - Scientific, technological and industrial services, research and design
  • 44 - Medical, veterinary, hygienic and cosmetic services; agriculture, horticulture and forestry services

Goods & Services

[ Reagents and bioactive compounds, namely, peptides, proteins, glycans, nucleotides, and lipids that are all organic compounds synthesized by a living organism, for industrial and scientific use ] [ Pharmaceutical preparations for the in vivo treatment of cancer, autoimmune and inflammatory diseases in patients ] Chemical and biological engineering of biological molecules, with a focus on chemical and enzymatic modification of proteins Medical analysis for the diagnosis and treatment of a condition in patients in the nature of medical advisory services

85.

Modified antibody, antibody-conjugate and process for the preparation thereof

      
Application Number 14807503
Grant Number 09504758
Status In Force
Filing Date 2015-07-23
First Publication Date 2015-11-12
Grant Date 2016-11-29
Owner SynAffix B.V. (Netherlands)
Inventor
  • Van Delft, Floris Louis
  • Van Geel, Remon
  • Wijdeven, Maria Antonia

Abstract

x substituent, and wherein said N-acetylglucosamine is optionally fucosylated. Also disclosed is an antibody-conjugate, in particular to an antibody-conjugate according to the Formula (20) or (20b), wherein AB is an antibody, S is a sugar or a sugar derivative, D is a molecule of interest, and wherein said N-acetylglucosamine is optionally fucosylated (b is 0 or 1). Also disclosed is a process for the preparation of a modified antibody, to a process for the preparation of an antibody-conjugate, and to said antibody-conjugate for use as a medicament.

IPC Classes  ?

  • A61K 47/30 - Macromolecular organic or inorganic compounds, e.g. inorganic polyphosphates
  • C07C 33/16 - Alcohols containing rings other than six-membered aromatic rings containing rings with more than six ring members
  • A61K 47/48 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers, inert additives the non-active ingredient being chemically bound to the active ingredient, e.g. polymer drug conjugates
  • C07K 16/32 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against translation products from oncogenes
  • C07K 16/22 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against growth factors
  • C07K 16/28 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
  • C12P 21/02 - Preparation of peptides or proteins having a known sequence of two or more amino acids, e.g. glutathione
  • C07K 16/30 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants from tumour cells
  • A61K 39/00 - Medicinal preparations containing antigens or antibodies

86.

Modified antibody, antibody-conjugate and process for the preparation thereof

      
Application Number 14437808
Grant Number 10745488
Status In Force
Filing Date 2013-10-23
First Publication Date 2015-09-17
Grant Date 2020-08-18
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Delft, Floris Louis
  • Van Geel, Remon
  • Wijdeven, Maria Antonia

Abstract

x substituent, and wherein said N-acetylglucosamine is optionally fucosylated. The invention also relates to an antibody-conjugate, in particular to an antibody-conjugate according to the Formula (20) or (20b), wherein AB is an antibody, S is a sugar or a sugar derivative, D is a molecule of interest, and wherein said N-acetylglucosamine is optionally fucosylated (b is 0 or 1). The invention further relates to a process for the preparation of a modified antibody, to a process for the preparation of an antibody-conjugate, and to said antibody-conjugate for use as a medicament. In addition, the invention relates to a kit of parts comprising an azide-modified antibody and a linker-conjugate, wherein said linker-conjugate comprises a (hetero)cycloalkynyl group and one or more molecules of interest.

IPC Classes  ?

  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • A61K 47/54 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic compound
  • C07K 16/30 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants from tumour cells
  • C07K 16/32 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against translation products from oncogenes
  • C07K 16/22 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against growth factors
  • C07K 16/28 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
  • C12P 21/02 - Preparation of peptides or proteins having a known sequence of two or more amino acids, e.g. glutathione
  • A61K 47/61 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic macromolecular compound, e.g. an oligomeric, polymeric or dendrimeric molecule the organic macromolecular compound being a polysaccharide or a derivative thereof
  • A61K 47/65 - Peptidic linkers, binders or spacers, e.g. peptidic enzyme-labile linkers
  • A61K 39/00 - Medicinal preparations containing antigens or antibodies

87.

PROCESS FOR THE ATTACHMENT OF A GALNAC MOIETY COMPRISING A (HETERO)ARYL GROUP TO A GLCNAC MOIETY, AND PRODUCT OBTAINED THEREBY

      
Application Number NL2015050044
Publication Number 2015/112013
Status In Force
Filing Date 2015-01-26
Publication Date 2015-07-30
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Delft, Floris Louis
  • Van Geel, Remon
  • Wijdeven, Maria Antonia
  • Heesbeen, Ryan

Abstract

The present invention relates to a process for attaching an N-acetylgalactosamine- (hetero)arylmoiety to an N-acetylglucosaminemoiety, the process comprising the step of contacting the N-acetylgalactosamine-(hetero)arylmoiety with the N- acetylglucosaminemoiety in the presence of a mutant galactosyltransferase, wherein the N-acetylglucosaminemoiety is according to Formula (1)the N- acetylgalactosamine-(hetero)arylmoiety is according to Formula (2): In a particularly preferred embodiment of the process according to the invention, the N-acetylgalactosamine-(hetero)arylmoiety comprises a 1,3-dipole functional group, and the N-acetylglucosaminemoiety is a terminal GlcNAc moiety of a glycoprotein glycan. The invention further relates to a productobtainable by the process according to the invention, in particular to glycoproteins. Also, the invention relates to several compounds comprising an N-acetylgalactosamine-(hetero)arylmoiety.

IPC Classes  ?

  • C12P 19/18 - Preparation of compounds containing saccharide radicals produced by the action of a glycosyl transferase, e.g. alpha-, beta- or gamma-cyclodextrins
  • C07H 17/075 - Benzo[b]pyran-2-ones
  • C07H 19/10 - Pyrimidine radicals with the saccharide radical being esterified by phosphoric or polyphosphoric acids
  • C07K 16/00 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies
  • C07K 19/00 - Hybrid peptides

88.

PROCESS FOR THE CYCLOADDITION OF A HALOGENATED 1,3-DIPOLE COMPOUND WITH A (HETERO)CYCLOALKYNE

      
Application Number NL2015050047
Publication Number 2015/112016
Status In Force
Filing Date 2015-01-26
Publication Date 2015-07-30
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Delft, Floris Louis
  • Van Geel, Remon
  • Wijdeven, Maria Antonia
  • Heesbeen, Ryan

Abstract

The present invention relates to a cycloaddition process comprising the step of reacting a halogenated aliphatic 1,3-dipole compound with a (hetero)cycloalkyne according to Formula (1): Preferably, the (hetero)cycloalkyne according to Formula (1) is a (hetero)cyclooctyne. The invention also relates to the cycloaddition products obtainable by the process according to the invention. The invention further relates to halogenated aliphatic 1,3- dipole compounds, in particular tohalogenated aliphatic 1,3-dipole compounds comprising N-acetylgalactosamine-UDP (GalNAc-UDP),and to halogenated 1,3- dipole compounds comprising (peracylated) N-acetylglucosamine(GlcNAc), N- acetylgalactosamine(GalNAc), N-acetylmannosamine(ManNAc)and N- acetylneuraminic acid(NeuNAc).

IPC Classes  ?

  • C07D 225/02 - Heterocyclic compounds containing rings of more than seven members having one nitrogen atom as the only ring hetero atom not condensed with other rings
  • C07D 225/08 - Heterocyclic compounds containing rings of more than seven members having one nitrogen atom as the only ring hetero atom condensed with carbocyclic rings or ring systems condensed with two six-membered rings
  • C07D 321/12 - Eight-membered rings
  • C07H 13/00 - Compounds containing saccharide radicals esterified by carbonic acid or derivatives thereof, or by organic acids, e.g. phosphonic acids
  • C07C 11/22 - Acyclic unsaturated hydrocarbons containing carbon-to-carbon triple bonds
  • C07H 19/00 - Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radicalNucleosidesMononucleotidesAnhydro derivatives thereof
  • A61K 47/48 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers, inert additives the non-active ingredient being chemically bound to the active ingredient, e.g. polymer drug conjugates

89.

PROCESS FOR THE CYCLOADDITION OF A HETERO(ARYL) 1,3-DIPOLE COMPOUND WITH A (HETERO)CYCLOALKYNE

      
Application Number NL2015050045
Publication Number 2015/112014
Status In Force
Filing Date 2015-01-26
Publication Date 2015-07-30
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Delft, Floris Louis
  • Dommerholt, Frederik Jan

Abstract

The present invention relates to a process comprising the step of reacting a (hetero)aryl 1,3-dipole compound with a (hetero)cycloalkyne, wherein: a (hetero)aryl 1,3-dipole compound is defined as a compound comprising a 1,3-dipole functional group, wherein the 1,3-dipole functional group is bonded to a (hetero)aryl group, and wherein the (hetero)aryl 1,3-dipole compound is a (hetero)aryl azide or a (hetero)aryl diazo compound; wherein: (i) the (hetero)aryl group of the (hetero)aryl 1,3-dipole compound comprises one or more substituents having a positive value for the para-Hammett substituent constant σp and/or the meta-Hammett substituent constant σm, and/or (ii) the (hetero)aryl group of the (hetero)aryl 1,3-dipole compound is an electron-poor (hetero)aryl group, wherein an electron-poor (hetero)aryl group is: (ii-a) a (hetero)aryl group wherein the (hetero)aromatic ring system is bearing a positive charge, and/or (ii-b) a (hetero)aryl group wherein the ratio {number of π-electrons present in the (hetero)aromatic ring system} : {number of protons present in the nuclei of the (hetero)aromatic ring system} is lower than 0.167 for a 6-membered ring, or lower than 0.200 for a 5-membered ring; and wherein the (hetero)cycloalkyne is a (hetero)cyclooctyne or a (hetero)cyclononyne according to Formula (1): The invention also relates to the products obtainable by the process according to the invention.

IPC Classes  ?

  • C07D 225/02 - Heterocyclic compounds containing rings of more than seven members having one nitrogen atom as the only ring hetero atom not condensed with other rings
  • C07D 225/08 - Heterocyclic compounds containing rings of more than seven members having one nitrogen atom as the only ring hetero atom condensed with carbocyclic rings or ring systems condensed with two six-membered rings
  • C07D 231/54 - Heterocyclic compounds containing 1,2-diazole or hydrogenated 1,2-diazole rings condensed with carbocyclic rings or ring systems
  • C07D 249/16 - Heterocyclic compounds containing five-membered rings having three nitrogen atoms as the only ring hetero atoms condensed with carbocyclic rings or ring systems
  • C07D 261/20 - Heterocyclic compounds containing 1,2-oxazole or hydrogenated 1,2-oxazole rings condensed with carbocyclic rings or ring systems
  • C07H 19/10 - Pyrimidine radicals with the saccharide radical being esterified by phosphoric or polyphosphoric acids
  • A61K 47/48 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers, inert additives the non-active ingredient being chemically bound to the active ingredient, e.g. polymer drug conjugates

90.

CONNECT TO CURE

      
Application Number 014421366
Status Registered
Filing Date 2015-07-29
Registration Date 2015-11-12
Owner Synaffix B.V. (Netherlands)
NICE Classes  ?
  • 01 - Chemical and biological materials for industrial, scientific and agricultural use
  • 05 - Pharmaceutical, veterinary and sanitary products
  • 42 - Scientific, technological and industrial services, research and design
  • 44 - Medical, veterinary, hygienic and cosmetic services; agriculture, horticulture and forestry services

Goods & Services

Reagents and bioactive compounds, being peptides, proteins, glycans, nucleotides, lipids and any other organic compound that is synthesized by a living organism, for industrial and scientific use. Pharmaceuticals for the in vivo treatment of a disease in patients. Chemical and biological engineering of biological molecules, with a focus on chemical and enzymatic modification of proteins. Medical analysis for the diagnosis and treatment of a condition in patients in the nature of medical advisory services.

91.

HYDRASPACE

      
Application Number 1253885
Status Registered
Filing Date 2015-04-13
Registration Date 2015-04-13
Owner Synaffix B.V. (Netherlands)
NICE Classes  ?
  • 01 - Chemical and biological materials for industrial, scientific and agricultural use
  • 05 - Pharmaceutical, veterinary and sanitary products
  • 42 - Scientific, technological and industrial services, research and design
  • 44 - Medical, veterinary, hygienic and cosmetic services; agriculture, horticulture and forestry services

Goods & Services

Reagents and bioactive compounds, being peptides, proteins, glycans, nucleotides, lipids and any other organic compounds that are synthesized by a living organism, for industrial and scientific use. Pharmaceuticals for the in vivo treatment of a disease in patients. Chemical and biological engineering of biological molecules, with a focus on chemical and enzymatic modification of proteins. Medical analysis for the diagnosis and treatment of a condition in patients in the nature of medical advisory services.

92.

Fused cyclooctyne compounds and their use in metal-free click reactions

      
Application Number 14512324
Grant Number 09222940
Status In Force
Filing Date 2014-10-10
First Publication Date 2015-05-07
Grant Date 2015-12-29
Owner SynAffix B.V. (Netherlands)
Inventor
  • Van Delft, Floris Louis
  • Rutjes, Floris Petrus Johannes Theodorus
  • Dommerholt, Frederik Jan

Abstract

The invention relates to fused cyclooctyne compounds, and to a method for their preparation. The invention also relates to a conjugate wherein a fused cyclooctyne compound according to the invention is conjugated to a label, and to the use of these conjugates in bioorthogonal labeling, imaging and/or modification, such as for example surface modification, of a target molecule. The invention further relates to a method for the modification of a target molecule, wherein a conjugate according to the invention is reacted with a compound comprising a 1,3-dipole or a 1,3-(hetero)diene.

IPC Classes  ?

  • C07C 33/16 - Alcohols containing rings other than six-membered aromatic rings containing rings with more than six ring members
  • C07C 271/10 - Esters of carbamic acids having oxygen atoms of carbamate groups bound to acyclic carbon atoms with the nitrogen atoms of the carbamate groups bound to hydrogen atoms or to acyclic carbon atoms
  • C07C 271/20 - Esters of carbamic acids having oxygen atoms of carbamate groups bound to acyclic carbon atoms with the nitrogen atoms of the carbamate groups bound to hydrogen atoms or to acyclic carbon atoms to carbon atoms of hydrocarbon radicals substituted by nitrogen atoms not being part of nitro or nitroso groups
  • C07C 29/147 - Preparation of compounds having hydroxy or O-metal groups bound to a carbon atom not belonging to a six-membered aromatic ring by reduction of an oxygen-containing functional group of C=O containing groups, e.g. —COOH of carboxylic acids or derivatives thereof
  • C07C 29/58 - Preparation of compounds having hydroxy or O-metal groups bound to a carbon atom not belonging to a six-membered aromatic ring by elimination of halogen, e.g. by hydrogenolysis, splitting-off
  • C07C 29/62 - Preparation of compounds having hydroxy or O-metal groups bound to a carbon atom not belonging to a six-membered aromatic ring by introduction of halogenPreparation of compounds having hydroxy or O-metal groups bound to a carbon atom not belonging to a six-membered aromatic ring by substitution of halogen atoms by other halogen atoms
  • C07C 269/04 - Preparation of derivatives of carbamic acid, i.e. compounds containing any of the groups the nitrogen atom not being part of nitro or nitroso groups from amines with formation of carbamate groups
  • C07C 67/347 - Preparation of carboxylic acid esters by modifying the acid moiety of the ester, such modification not being an introduction of an ester group by isomerisationPreparation of carboxylic acid esters by modifying the acid moiety of the ester, such modification not being an introduction of an ester group by change of size of the carbon skeleton by increase in the number of carbon atoms by addition to unsaturated carbon-to-carbon bonds
  • A61K 47/48 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers, inert additives the non-active ingredient being chemically bound to the active ingredient, e.g. polymer drug conjugates
  • A61K 49/00 - Preparations for testing in vivo
  • G01N 33/58 - Chemical analysis of biological material, e.g. blood, urineTesting involving biospecific ligand binding methodsImmunological testing involving labelled substances
  • G01N 33/532 - Production of labelled immunochemicals
  • C07C 271/12 - Esters of carbamic acids having oxygen atoms of carbamate groups bound to acyclic carbon atoms with the nitrogen atoms of the carbamate groups bound to hydrogen atoms or to acyclic carbon atoms to hydrogen atoms or to carbon atoms of unsubstituted hydrocarbon radicals
  • C07C 62/30 - Unsaturated compounds
  • C07C 269/06 - Preparation of derivatives of carbamic acid, i.e. compounds containing any of the groups the nitrogen atom not being part of nitro or nitroso groups by reactions not involving the formation of carbamate groups
  • C07D 311/82 - Xanthenes
  • C07D 495/04 - Ortho-condensed systems
  • C07K 14/47 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from animalsPeptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from humans from vertebrates from mammals

93.

MODIFIED GLYCOPROTEIN, PROTEIN-CONJUGATE AND PROCESS FOR THE PREPARATION THEREOF

      
Application Number NL2014050714
Publication Number 2015/057063
Status In Force
Filing Date 2014-10-14
Publication Date 2015-04-23
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Delft, Floris Louis
  • Van Geel, Remon
  • Wijdeven, Maria Antonia
  • Verkade, Jorge Merijn Mathieu
  • Heesbeen, Ryan

Abstract

The invention relates to a glycoprotein comprising an optionally fucosylated glycan according to formula (105) or (106), wherein Su(A)x is a modified sugar moiety comprising one or more functional groups A. Functional group A is independently selected from the group consisting of a thiol group, a halogen, a sulfonyloxy group, a halogenated acetamido group, a mercaptoacetamido group and a sulfonated hydroxyacetamido group. The invention also relates to a glycoprotein-conjugate wherein a glycoprotein according to the invention is conjugated to a molecule of interest. Said molecule of interest may for example be an active substance. The invention further relates to a process for the preparation of a modified glycoprotein, and to a method for the preparation of a glycoprotein-conjugate. The invention particularly relates to modified antibodies, antibody-conjugates, antibody-drug conjugates and methods for the preparation thereof.

IPC Classes  ?

  • C12P 21/00 - Preparation of peptides or proteins
  • C07K 16/00 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies
  • A61P 35/00 - Antineoplastic agents

94.

MODIFIED GLYCOPROTEIN, PROTEIN-CONJUGATE AND PROCESS FOR THE PREPARATION THEREOF

      
Application Number NL2014050715
Publication Number 2015/057064
Status In Force
Filing Date 2014-10-14
Publication Date 2015-04-23
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Delft, Floris Louis
  • Van Geel, Remon
  • Wijdeven, Maria Antonia

Abstract

The present invention relates to a glycoprotein comprising a glycan of the formula (102), wherein b is 0 or 1, wherein the core GlcNAcresidue of said glycan is optionally fucosylated, wherein Su(A)x is a sugar derivative comprising x functional groups A wherein x is 1, 2, 3 or 4 and A is independently selected from the group consisting of an azido group, a keto group, an alkynyl group, a thiol group, a halogen, a sulfonyloxy group, a halogenated acetamido group, a mercaptoacetamido group and a sulfonylated hydroxyacetamido group. (Formula (102)), The invention further relates to a protein-conjugate wherein a modified glycoprotein according to the invention is conjugated to a molecule of interest. Said molecule of interest may for example be an active substance. The invention further relates to a process for the preparation of a modified glycoprotein according to the invention, and to a method for the preparation of a protein-conjugate according to the invention. The invention particularly relates to modified antibodies, antibody-conjugates, antibody-drug conjugates (ADCs) and methods for the preparation thereof.

IPC Classes  ?

  • C12P 21/00 - Preparation of peptides or proteins
  • C07K 16/30 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants from tumour cells

95.

GLYCOENGINEERED ANTIBODY, ANTIBODY-CONJUGATE AND METHODS FOR THEIR PREPARATION

      
Application Number NL2014050717
Publication Number 2015/057066
Status In Force
Filing Date 2014-10-14
Publication Date 2015-04-23
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Delft, Floris Louis
  • Van Geel, Remon
  • Wijdeven, Maria Antonia

Abstract

The invention relates to glycoengineered antibodies and antibody-conjugates. In particular, the invention relates to an antibody conjugate, prepared from an IgG antibody comprising one N-linked glycosylation site on the combination of a single heavy chain and single light chain, wherein the N-linked glycosylation site is a mutant N-linked glycosylation site as compared to its wild type counterpart. The invention further relates to methods for the preparation of the antibody-conjugates according to the invention.

IPC Classes  ?

  • C12P 21/08 - Monoclonal antibodies
  • A61K 39/395 - AntibodiesImmunoglobulinsImmune serum, e.g. antilymphocytic serum
  • A61K 47/48 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers, inert additives the non-active ingredient being chemically bound to the active ingredient, e.g. polymer drug conjugates
  • A61P 35/00 - Antineoplastic agents

96.

GLYCOENGINEERED ANTIBODY, ANTIBODY-CONJUGATE AND METHODS FOR THEIR PREPARATION

      
Application Number NL2014050716
Publication Number 2015/057065
Status In Force
Filing Date 2014-10-14
Publication Date 2015-04-23
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Van Delft, Floris Louis
  • Van Geel, Remon
  • Wijdeven, Maria Antonia
  • Verkade, Jorge Merijn Mathieu
  • Heesbeen, Ryan

Abstract

The invention relates to glycoengineered antibodies and antibody-conjugates. In particular, the invention relates to an antibody conjugate, prepared from IgG antibody comprising at least two N-linked glycosylation sites on the combination of a single heavy chain and single light chain. The invention further relates to methods for the preparation of the antibody- conjugates according to the invention.In particular, the invention relates to an antibody-drug conjugate that is conjugated to different toxins, and the a process for the preparation thereof.

IPC Classes  ?

  • A61K 47/48 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers, inert additives the non-active ingredient being chemically bound to the active ingredient, e.g. polymer drug conjugates
  • C07K 1/107 - General processes for the preparation of peptides by chemical modification of precursor peptides
  • A61P 35/00 - Antineoplastic agents

97.

HYDRASPACE

      
Serial Number 79168056
Status Registered
Filing Date 2015-04-13
Registration Date 2016-02-16
Owner Synaffix B.V. (Netherlands)
NICE Classes  ?
  • 01 - Chemical and biological materials for industrial, scientific and agricultural use
  • 05 - Pharmaceutical, veterinary and sanitary products
  • 42 - Scientific, technological and industrial services, research and design
  • 44 - Medical, veterinary, hygienic and cosmetic services; agriculture, horticulture and forestry services

Goods & Services

[ Reagents and bioactive compounds, being peptides, proteins, glycans, nucleotides, lipids and chemicals that are organic compounds synthesized by a living organism, for industrial and scientific use ] [ Pharmaceuticals for the in vivo treatment of cancer, autoimmune and inflammatory diseases in patients ] Chemical and biological engineering of biological molecules, with a focus on chemical and enzymatic modification of proteins Medical analysis for the diagnosis and treatment of a condition in patients in the nature of medical advisory services

98.

HYDRASPACE

      
Application Number 013850086
Status Registered
Filing Date 2015-03-18
Registration Date 2015-07-22
Owner Synaffix B.V. (Netherlands)
NICE Classes  ?
  • 01 - Chemical and biological materials for industrial, scientific and agricultural use
  • 05 - Pharmaceutical, veterinary and sanitary products
  • 42 - Scientific, technological and industrial services, research and design
  • 44 - Medical, veterinary, hygienic and cosmetic services; agriculture, horticulture and forestry services

Goods & Services

Reagents and bioactive compounds, being peptides, proteins, glycans, nucleotides, lipids and any other organic compound that is synthesized by a living organism, for industrial and scientific use. Pharmaceuticals for the in vivo treatment of a disease in patients. Chemical and biological engineering of biological molecules, with a focus on chemical and enzymatic modification of proteins. Medical analysis for the diagnosis and treatment of a condition in patients in the nature of medical advisory services.

99.

SUBSTITUTED AZADIBENZOCYCLOOCTYNE COMPOUNDS AND THEIR USE IN METAL-FREE CLICK REACTIONS

      
Application Number NL2014050319
Publication Number 2014/189370
Status In Force
Filing Date 2014-05-21
Publication Date 2014-11-27
Owner SYNAFFIX B.V. (Netherlands)
Inventor
  • Debets, Marjoke Froukje
  • Rutjes, Floris Petrus Johannes Theodorus
  • Van Hest, Jan Cornelis Maria
  • Van Delft, Floris Louis
  • Van Berkel, Sander Sebastiaan

Abstract

The invention relates to a substituted azadibenzocyclooctyne compound according to Formula (5): The invention also relates to a conjugate wherein a substituted azadibenzocyclooctyne according to the invention is conjugated to a label, and to the use of these conjugates for bioorthogonal labeling, imaging or modification of a target molecule, e.g. surface modification. The invention further relates to a method for the modification of a target molecule, wherein a conjugate according to the invention is reacted with a compound comprising a 1,3-dipole or a 1,3-(hetero)diene.

IPC Classes  ?

  • C07D 225/08 - Heterocyclic compounds containing rings of more than seven members having one nitrogen atom as the only ring hetero atom condensed with carbocyclic rings or ring systems condensed with two six-membered rings

100.

GLYCO CONNECT

      
Application Number 1211532
Status Registered
Filing Date 2014-03-28
Registration Date 2014-03-28
Owner Synaffix B.V. (Netherlands)
NICE Classes  ?
  • 01 - Chemical and biological materials for industrial, scientific and agricultural use
  • 42 - Scientific, technological and industrial services, research and design
  • 44 - Medical, veterinary, hygienic and cosmetic services; agriculture, horticulture and forestry services

Goods & Services

Reagents and bioactive compounds for industrial and scientific use. Chemical and/or enzymatic modification of proteins. Medical analysis for the diagnosis and treatment of a condition in patients.
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