Codexis, Inc.

United States of America

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C12N 9/02 - Oxidoreductases (1.), e.g. luciferase 146
C12N 9/04 - Oxidoreductases (1.), e.g. luciferase acting on CHOH groups as donors, e.g. glucose oxidase, lactate dehydrogenase (1.1) 136
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1.

ENGINEERED RNA LIGASES

      
Application Number 19009695
Status Pending
Filing Date 2025-01-03
First Publication Date 2025-07-10
Owner Codexis, Inc. (USA)
Inventor
  • Alvizo, Oscar
  • Elgart, David
  • Garcia, Ravi David
  • Kruse, Nikki D.
  • Miller, Mathew G.
  • Nazor, Jovana
  • Rui, Zhe
  • Srivastava, Arya

Abstract

The present disclosure relates to engineered RNA ligase polypeptides and compositions thereof, as well as polynucleotides encoding the engineered RNA ligase polypeptides. The present disclosure also provides methods of using the engineered RNA ligase polypeptides or compositions thereof for molecular biological, diagnostic, and other purposes.

IPC Classes  ?

  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes

2.

ENGINEERED RNA LIGASES

      
Application Number US2025010294
Publication Number 2025/147655
Status In Force
Filing Date 2025-01-03
Publication Date 2025-07-10
Owner CODEXIS, INC. (USA)
Inventor
  • Alvizo, Oscar
  • Elgart, David
  • Garcia, Ravi, David
  • Kruse, Nikki, D.
  • Miller, Mathew, G.
  • Nazor, Jovana
  • Rui, Zhe
  • Srivastava, Arya

Abstract

The present disclosure relates to engineered RNA ligase polypeptides and compositions thereof, as well as polynucleotides encoding the engineered RNA ligase polypeptides. The present disclosure also provides methods of using the engineered RNA ligase polypeptides or compositions thereof for molecular biological, diagnostic, and other purposes.

IPC Classes  ?

  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes
  • C12N 15/52 - Genes encoding for enzymes or proenzymes

3.

ENGINEERED ACETATE KINASE VARIANT ENZYMES

      
Application Number 19081728
Status Pending
Filing Date 2025-03-17
First Publication Date 2025-07-03
Owner Codexis, Inc. (USA)
Inventor
  • Vroom, Jonathan
  • Ortega Guerra, Alberto
  • Nazor, Jovana
  • Krawczyk, Mikayla Jianghongxia

Abstract

The present invention provides engineered acetate kinase (AcK) enzymes, polypeptides having AcK activity, and polynucleotides encoding these enzymes, as well as vectors and host cells comprising these polynucleotides and polypeptides. Methods for producing AcK enzymes are also provided. The present invention further provides compositions comprising the AcK enzymes and methods of using the engineered AcK enzymes. The present invention finds particular use in the production of pharmaceutical compounds.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 15/63 - Introduction of foreign genetic material using vectorsVectorsUse of hosts thereforRegulation of expression

4.

KETOREDUCTASE POLYPEPTIDES AND POLYNUCLEOTIDES

      
Application Number 19079931
Status Pending
Filing Date 2025-03-14
First Publication Date 2025-06-26
Owner Codexis, Inc. (Reunion)
Inventor
  • Moore, Jeffrey C.
  • Liang, Jack
  • Penfield, Jonathan
  • Nazor, Jovana
  • Dellas, Nikki
  • Mitchell, Vesna
  • Duan, Da
  • Farasat, Iman
  • Rodriguez-Granillo, Agustina
  • Murphy, Grant
  • Marshall, Nicholas

Abstract

The present invention provides engineered ketoreductase and phosphite dehydrogenase enzymes having improved properties as compared to a naturally occurring wild-type ketoreductase and phosphite dehydrogenase enzymes, as well as polynucleotides encoding the engineered ketoreductase and phosphite dehydrogenase enzymes, host cells capable of expressing the engineered ketoreductase and phosphite dehydrogenase enzymes, and methods of using the engineered ketoreductase and phosphite dehydrogenase enzymes to synthesize a chiral catalyst used in the synthesis of antiviral compounds, such as nucleoside inhibitors. The present invention further provides methods of using the engineered enzymes to deracemize a chiral alcohol in a one-pot, multi-enzyme system.

IPC Classes  ?

  • C12P 41/00 - Processes using enzymes or microorganisms to separate optical isomers from a racemic mixture
  • C12N 9/02 - Oxidoreductases (1.), e.g. luciferase
  • C12N 9/04 - Oxidoreductases (1.), e.g. luciferase acting on CHOH groups as donors, e.g. glucose oxidase, lactate dehydrogenase (1.1)
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli

5.

BIOCATALYSTS AND METHODS FOR HYDROXYLATION OF CHEMICAL COMPOUNDS

      
Application Number 19054277
Status Pending
Filing Date 2025-02-14
First Publication Date 2025-06-05
Owner Codexis, Inc. (USA)
Inventor
  • Chen, Haibin
  • Bong, Yong Koy
  • Cabirol, Fabien L.
  • Gohel Prafulchandra, Anupam
  • Li, Tao
  • Moore, Jeffrey C.
  • Quintanar-Audelo, Martina
  • Hong, Yang
  • Collier, Steven J.
  • Smith, Derek

Abstract

The present disclosure provides engineered proline hydroxylase polypeptides for the production of hydroxylated compounds, polynucleotides encoding the engineered proline hydroxylases, host cells capable of expressing the engineered proline hydroxylases, and methods of using the engineered proline hydroxylases to prepare compounds useful in the production of active pharmaceutical agents.

IPC Classes  ?

  • C12P 17/12 - Nitrogen as only ring hetero atom containing a six-membered hetero ring
  • C12N 9/02 - Oxidoreductases (1.), e.g. luciferase
  • C12P 13/04 - Alpha- or beta-amino acids
  • C12P 13/24 - ProlineHydroxyprolineHistidine
  • C12P 17/18 - Preparation of heterocyclic carbon compounds with only O, N, S, Se, or Te as ring hetero atoms containing at least two hetero rings condensed among themselves or condensed with a common carbocyclic ring system, e.g. rifamycin

6.

ENGINEERED RNA LIGASES

      
Application Number US2024056979
Publication Number 2025/111510
Status In Force
Filing Date 2024-11-21
Publication Date 2025-05-30
Owner CODEXIS, INC. (USA)
Inventor
  • Bakhtina, Marina, Mikhailovna
  • Elgart, David
  • Kruse, Nikki, D.
  • Miller, Mathew, G.
  • Nazor, Jovana
  • Novick, Scott, J.
  • Shoubber, Amani
  • Vojcic, Ljubica

Abstract

The present disclosure provides engineered RNA ligases, recombinant polynucleotides encoding the engineered RNA ligases, and compositions of the engineered RNA ligases. The present disclosure further provides uses of the engineered RNA ligases for ligation of polynucleotide substrates.

IPC Classes  ?

  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes
  • C12N 15/10 - Processes for the isolation, preparation or purification of DNA or RNA
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • C12N 15/74 - Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora
  • C12N 15/85 - Vectors or expression systems specially adapted for eukaryotic hosts for animal cells

7.

ENGINEERED RNA LIGASES

      
Application Number 18955904
Status Pending
Filing Date 2024-11-21
First Publication Date 2025-05-22
Owner CODEXIS, INC. (USA)
Inventor
  • Bakhtina, Marina Mikhailovna
  • Elgart, David
  • Kruse, Nikki D.
  • Miller, Mathew G.
  • Nazor, Jovana
  • Novick, Scott J.
  • Shoubber, Amani
  • Vojcic, Ljubica

Abstract

The present disclosure provides engineered RNA ligases, recombinant polynucleotides encoding the engineered RNA ligases, and compositions of the engineered RNA ligases. The present disclosure further provides uses of the engineered RNA ligases for ligation of polynucleotide substrates.

IPC Classes  ?

  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes
  • C12N 15/11 - DNA or RNA fragmentsModified forms thereof
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • C12P 21/02 - Preparation of peptides or proteins having a known sequence of two or more amino acids, e.g. glutathione

8.

ENGINEERED NUCLEOSIDE DEOXYRIBOSYLTRANSFERASE VARIANT ENZYMES

      
Application Number 18683245
Status Pending
Filing Date 2022-08-10
First Publication Date 2025-05-01
Owner Codexis, Inc. (USA)
Inventor
  • Borra-Garske, Margie Tabuga
  • Alvizo, Oscar
  • Miller, Lillian Jasmine
  • Petkova, Aksiniya Lyubenova
  • Huffman, Mark
  • Rodriguez-Granillo, Agustina

Abstract

The present invention provides engineered nucleoside deoxyribosyltransferase (NDT) enzymes, polypeptides having NDT activity, and polynucleotides encoding these enzymes, as well as vectors and host cells comprising these polynucleotides and polypeptides. Methods for producing NDT enzymes are also provided. The present invention further provides compositions comprising the NDT enzymes and methods of using the engineered NDT enzymes. The present invention finds particular use in the production of pharmaceutical compounds.

IPC Classes  ?

  • C12N 9/10 - Transferases (2.)
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli

9.

ENGINEERED IMINE REDUCTASES AND METHODS FOR THE REDUCTIVE AMINATION OF KETONE AND AMINE COMPOUNDS

      
Application Number 18976769
Status Pending
Filing Date 2024-12-11
First Publication Date 2025-05-01
Owner Codexis, Inc. (USA)
Inventor
  • Yi, Xiang
  • Alvizo, Oscar
  • Garcia, Ravi David
  • Entwistle, David
  • Ching, Charlene
  • Riggins, James Nicholas

Abstract

The present application provides engineered polypeptides having imine reductase activity, polynucleotides encoding the engineered polypeptides, host cells capable of expressing the engineered polypeptides, and methods of using these engineered polypeptides with a range of ketone and amine substrate compounds to prepare secondary and tertiary amine product compounds.

IPC Classes  ?

  • C12P 13/04 - Alpha- or beta-amino acids
  • C12N 9/06 - Oxidoreductases (1.), e.g. luciferase acting on nitrogen containing compounds as donors (1.4, 1.5, 1.7)

10.

ENGINEERED GLUCOSE DEHYDROGENASES AND METHODS FOR THE REDUCTIVE AMINATION OF KETONE AND AMINE COMPOUNDS

      
Application Number 18999352
Status Pending
Filing Date 2024-12-23
First Publication Date 2025-04-24
Owner Codexis, Inc. (USA)
Inventor
  • Yi, Xiang
  • Alvizo, Oscar
  • Garcia, Ravi David
  • Entwistle, David
  • Ching, Charlene
  • Riggins, James Nicholas
  • Subramanian, Nandhitha

Abstract

The present application provides engineered glucose dehydrogenase polypeptides having imine reductase activity, polynucleotides encoding the engineered polypeptides, host cells capable of expressing the engineered polypeptides, and methods of using these engineered polypeptides with a range of ketone and amine substrate compounds to prepare secondary and tertiary amine product compounds.

IPC Classes  ?

  • C12N 9/04 - Oxidoreductases (1.), e.g. luciferase acting on CHOH groups as donors, e.g. glucose oxidase, lactate dehydrogenase (1.1)
  • C12N 1/20 - BacteriaCulture media therefor
  • C12N 15/72 - Expression systems using regulatory sequences derived from the lac-operon

11.

ENGINEERED ADENYLATE KINASE VARIANTS

      
Application Number 18913751
Status Pending
Filing Date 2024-10-11
First Publication Date 2025-04-17
Owner Codexis, Inc. (USA)
Inventor
  • Forget, Stephanie Marie
  • Knight, Anders Matthew
  • Macavoy, Marissa Greene
  • Ng, Simon
  • Porter, Nicholas
  • Vroom, Jonathan

Abstract

The present disclosure provides engineered adenylate kinases, and recombinant polynucleotides encoding the engineered adenylate kinases. The present disclosure further provides uses of the engineered adenylate kinases for converting NMP to NDP.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 9/08 - Oxidoreductases (1.), e.g. luciferase acting on hydrogen peroxide as acceptor (1.11)
  • C12N 15/11 - DNA or RNA fragmentsModified forms thereof

12.

ENGINEERED ADENOSINE KINASE VARIANTS

      
Application Number 18913982
Status Pending
Filing Date 2024-10-11
First Publication Date 2025-04-17
Owner Codexis, Inc. (USA)
Inventor
  • Forget, Stephanie Marie
  • Macavoy, Marissa Greene
  • Ng, Simon
  • Porter, Nicholas
  • Teadt, Leann Quertinmont
  • Vroom, Jonathan

Abstract

The present disclosure provides engineered adenosine kinase polypeptides, and recombinant polynucleotides encoding the engineered adenosine kinases. The present disclosure further provides method of using the engineered adenosine kinases.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)

13.

ENGINEERED ADENOSINE KINASE VARIANTS

      
Application Number US2024051139
Publication Number 2025/081113
Status In Force
Filing Date 2024-10-11
Publication Date 2025-04-17
Owner CODEXIS, INC. (USA)
Inventor
  • Forget, Stephanie, Marie
  • Macavoy, Marissa, Greene
  • Ng, Simon
  • Porter, Nicholas
  • Teadt, Leann, Quertinmont
  • Vroom, Jonathan

Abstract

The present disclosure provides engineered adenosine kinase polypeptides, and recombinant polynucleotides encoding the engineered adenosine kinases. The present disclosure further provides method of using the engineered adenosine kinases.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 15/63 - Introduction of foreign genetic material using vectorsVectorsUse of hosts thereforRegulation of expression
  • C12P 19/30 - Nucleotides

14.

ENGINEERED ACETATE KINASE VARIANTS

      
Application Number 18913845
Status Pending
Filing Date 2024-10-11
First Publication Date 2025-04-17
Owner Codexis, Inc. (USA)
Inventor
  • Forget, Stephanie Marie
  • Macavoy, Marissa Greene
  • Ng, Simon
  • Porter, Nicholas
  • Vroom, Jonathan

Abstract

The present disclosure relates to engineered acetate kinase enzymes and compositions thereof, recombinant polynucleotides encoding the engineered acetate kinase enzymes, and method of using the engineered acetate kinase enzymes.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 11/00 - Carrier-bound or immobilised enzymesCarrier-bound or immobilised microbial cellsPreparation thereof
  • C12P 19/38 - Nucleosides

15.

ENGINEERED ADENYLATE KINASE VARIANTS

      
Application Number US2024051084
Publication Number 2025/081067
Status In Force
Filing Date 2024-10-11
Publication Date 2025-04-17
Owner CODEXIS, INC. (USA)
Inventor
  • Forget, Stephanie, Marie
  • Knight, Anders, Matthew
  • Macavoy, Marissa, Greene
  • Ng, Simon
  • Porter, Nicholas
  • Vroom, Jonathan

Abstract

The present disclosure provides engineered adenylate kinases, and recombinant polynucleotides encoding the engineered adenylate kinases. The present disclosure further provides uses of the engineered adenylate kinases for converting NMP to NDP.

IPC Classes  ?

  • C12Q 1/48 - Measuring or testing processes involving enzymes, nucleic acids or microorganismsCompositions thereforProcesses of preparing such compositions involving transferase
  • C07H 21/02 - Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids with ribosyl as saccharide radical
  • C12Q 1/22 - Testing for sterility conditions
  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12P 19/30 - Nucleotides

16.

ENGINEERED ACETATE KINASE VARIANTS

      
Application Number US2024051118
Publication Number 2025/081095
Status In Force
Filing Date 2024-10-11
Publication Date 2025-04-17
Owner CODEXIS, INC. (USA)
Inventor
  • Forget, Stephanie Marie
  • Macavoy, Marissa Greene
  • Ng, Simon
  • Porter, Nicholas
  • Vroom, Jonathan

Abstract

The present disclosure relates to engineered acetate kinase enzymes and compositions thereof, recombinant polynucleotides encoding the engineered acetate kinase enzymes, and method of using the engineered acetate kinase enzymes.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C07K 14/195 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from bacteria
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 15/63 - Introduction of foreign genetic material using vectorsVectorsUse of hosts thereforRegulation of expression
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli

17.

BIOCATALYSTS AND METHODS FOR THE SYNTHESIS OF SUBSTITUTED LACTAMS

      
Application Number 18971755
Status Pending
Filing Date 2024-12-06
First Publication Date 2025-03-27
Owner Codexis, Inc. (USA)
Inventor
  • Cabirol, Fabien Louis
  • Chen, Haibin
  • Gohel, Anupam
  • Salim, Paulina Elena
  • Smith, Derek J.
  • Janey, Jacob
  • Kosjek, Birgit
  • Tang, Weng Lin
  • Hsieh, Helen
  • Pham, Son Q.

Abstract

The present disclosure relates to transaminase polypeptides capable of aminating a dicarbonyl substrate, and polynucleotides, vectors, host cells, and methods of making and using the transaminase polypeptides.

IPC Classes  ?

  • C12N 9/10 - Transferases (2.)
  • C07D 211/76 - Oxygen atoms attached in position 2 or 6
  • C12P 13/00 - Preparation of nitrogen-containing organic compounds
  • C12P 17/12 - Nitrogen as only ring hetero atom containing a six-membered hetero ring

18.

ENGINEERED CYCLIC GMP-AMP SYNTHASE (cGAS) VARIANT ENZYMES

      
Application Number 18953518
Status Pending
Filing Date 2024-11-20
First Publication Date 2025-03-13
Owner Codexis, Inc. (USA)
Inventor
  • Borra-Garske, Margie Tabuga
  • Alvizo, Oscar
  • Miller, Lillian Jasmine
  • Petkova, Aksiniya Lyubenova

Abstract

Cyclic GMP-AMP synthase (cGAS) enzymes have been engineered to produce polypeptides having increased cGAS activity in the cyclization of modified nucleoside triphosphates, including thiolated or fluorinated nucleoside triphosphates, and polynucleotides encoding these enzymes, as well as vectors and host cells comprising these polynucleotides and polypeptides. Methods for producing cGAS enzymes, compositions comprising the cGAS enzymes and methods of using the engineered cGAS enzymes are useful for the production of pharmaceutical compounds.

IPC Classes  ?

  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 15/63 - Introduction of foreign genetic material using vectorsVectorsUse of hosts thereforRegulation of expression

19.

IGM PROTEASES

      
Application Number US2024044871
Publication Number 2025/050045
Status In Force
Filing Date 2024-08-30
Publication Date 2025-03-06
Owner CODEXIS, INC. (USA)
Inventor
  • Ferrer, Brian
  • Kruse, Nikki, D.
  • Silverman, Adam, P.
  • Windgassen, Tricia

Abstract

The present disclosure relates to proteases that exhibit activity against immunoglobulins, particularly IgM antibodies, and uses of the proteases for analysis of IgM, for generation of IgM antibody fragments, diagnostics related to IgM antibodies, and for treating and/or preventing diseases mediated by IgM antibodies.

IPC Classes  ?

  • C07K 16/12 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from bacteria
  • C07K 14/315 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from bacteria from Streptococcus (G), e.g. Enterococci
  • A61K 39/00 - Medicinal preparations containing antigens or antibodies
  • A61P 35/00 - Antineoplastic agents

20.

PENICILLIN-G ACYLASES

      
Application Number 18612248
Status Pending
Filing Date 2024-03-21
First Publication Date 2025-01-30
Owner Codexis, Inc. (USA)
Inventor
  • Nazor, Jovana
  • Mitchell, Vesna
  • Elgart, David
  • Lexa, Katrina W.
  • Dellas, Nikki
  • Orr, Robert Kevin
  • Alvizo, Oscar
  • Garcia, Ravi David
  • Viduya, Judy Victoria Antonio
  • Moffett, Courtney Dianne

Abstract

The present invention provides engineered penicillin G acylase (PGA) enzymes having improved properties, polynucleotides encoding such enzymes, compositions including the enzymes, and methods of using the enzymes.

IPC Classes  ?

  • C12N 9/84 - Penicillin amidase
  • C07K 14/62 - Insulins
  • C12P 21/02 - Preparation of peptides or proteins having a known sequence of two or more amino acids, e.g. glutathione

21.

ENGINEERED THREONINE ALDOLASES AND AMINO ACID DECARBOXYLASES

      
Application Number 18714030
Status Pending
Filing Date 2022-12-01
First Publication Date 2025-01-30
Owner Codexis, Inc. (USA)
Inventor
  • Alvizo, Oscar
  • Novick, Scott J.
  • Subramanian, Nandhitha
  • Schlama, Thierry

Abstract

The present invention provides engineered threonine aldolase and amino acid decarboxylase polypeptides useful for the production of the chiral tertiary amino alcohols, as well as polynucleotides, compositions, and methods utilizing these engineered polypeptides.

IPC Classes  ?

22.

ENGINEERED DNA POLYMERASE VARIANTS

      
Application Number 18903185
Status Pending
Filing Date 2024-10-01
First Publication Date 2025-01-23
Owner Codexis, Inc. (USA)
Inventor
  • Bermudez, Ericka
  • Elgart, David
  • Kruse, Nikki D.
  • Miller, Mathew G.
  • Mitchell, Vesna
  • Nazor, Jovana
  • Subramanian, Nandhitha

Abstract

The present disclosure relates to engineered DNA polymerase polypeptides and compositions thereof, as well as polynucleotides encoding the engineered DNA polymerase polypeptides. The present disclosure also provides methods of using the engineered DNA polymerase polypeptides or compositions thereof for diagnostic and other purposes.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 15/63 - Introduction of foreign genetic material using vectorsVectorsUse of hosts thereforRegulation of expression

23.

ENGINEERED PURINE NUCLEOSIDE PHOSPHORYLASE VARIANT ENZYMES

      
Application Number 18906502
Status Pending
Filing Date 2024-10-04
First Publication Date 2025-01-23
Owner Codexis, Inc. (USA)
Inventor
  • Novick, Scott J.
  • Dellas, Nikki
  • Mitchell, Vesna
  • Duan, Da
  • Nazor, Jovana
  • Alvizo, Oscar
  • Sowell-Kantz, Auric Anthony
  • Moore, Jeffrey C.
  • Huffman, Mark A.
  • Rodriguez-Granillo, Agustina
  • Verma, Deeptak
  • Marshall, Nicholas M.
  • Russell, Jay H.
  • Canada, Keith A.

Abstract

The present invention provides engineered purine nucleoside phosphorylase (PNP) enzymes, polypeptides having PNP activity, and polynucleotides encoding these enzymes, as well as vectors and host cells comprising these polynucleotides and polypeptides. Methods for producing PNP enzymes are also provided. The present invention further provides compositions comprising the PNP enzymes and methods of using the engineered PNP enzymes. The present invention finds particular use in the production of pharmaceutical compounds.

IPC Classes  ?

  • C12N 15/63 - Introduction of foreign genetic material using vectorsVectorsUse of hosts thereforRegulation of expression

24.

T7 RNA POLYMERASE VARIANTS

      
Application Number 18909833
Status Pending
Filing Date 2024-10-08
First Publication Date 2025-01-23
Owner Codexis, Inc. (USA)
Inventor
  • Miller, Mathew G.
  • Chng, Chinping
  • Alvizo, Oscar
  • Mayo, Melissa Ann
  • Riggins, James Nicholas
  • Yi, Xiang
  • Penfield, Jonathan S.
  • Huisman, Gjalt W.
  • Davis, Jared
  • Saotome, Yasushi

Abstract

The present invention provides engineered RNA polymerase variants and compositions comprising these variants. The present invention further provides engineered T7 RNA polymerase variants and compositions comprising these variants. These variants have been evolved for selective incorporation of the m7G(5′)ppp(5′)m7G cap analog over GTP at the initiation of in vitro transcription. The present invention also provides methods for selective capping of RNA transcripts.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 15/00 - Mutation or genetic engineeringDNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purificationUse of hosts therefor
  • C12P 19/34 - Polynucleotides, e.g. nucleic acids, oligoribonucleotides

25.

BIOCATALYSTS FOR EZETIMIBE SYNTHESIS

      
Application Number 18886292
Status Pending
Filing Date 2024-09-16
First Publication Date 2025-01-09
Owner Codexis Inc. (USA)
Inventor
  • Crowe, Michael A.
  • Alvizo, Oscar
  • Behrouzian, Behnaz
  • Bong, Yong Koy
  • Collier, Steven J.
  • Gohel, Anupam
  • Mavinahalli, Jagedeesh
  • Modukuru, Naga K.
  • Mundorff, Emily
  • Smith, Derek J.
  • Song, Shiwei
  • Yeo, Wan Lin

Abstract

The present disclosure relates to non-naturally occurring polypeptides useful for preparing Ezetimibe, polynucleotides encoding the polypeptides, and methods of using the polypeptides.

IPC Classes  ?

  • C12N 9/04 - Oxidoreductases (1.), e.g. luciferase acting on CHOH groups as donors, e.g. glucose oxidase, lactate dehydrogenase (1.1)
  • A61K 38/00 - Medicinal preparations containing peptides
  • C07K 14/47 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from animalsPeptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from humans from vertebrates from mammals
  • C12P 17/10 - Nitrogen as only ring hetero atom
  • C12P 17/14 - Nitrogen or oxygen as hetero atom and at least one other diverse hetero ring atom in the same ring

26.

ENGINEERED PANTOTHENATE KINASE VARIANT ENZYMES

      
Application Number 18822990
Status Pending
Filing Date 2024-09-03
First Publication Date 2024-12-26
Owner Codexis, Inc. (USA)
Inventor
  • Borra-Garske, Margie Tabuga
  • Alvizo, Oscar
  • Miller, Lillian Jasmine
  • Slaton, Jesse B.
  • Petkova, Aksiniya Lyubenova
  • Subramanian, Nandhitha
  • Kolev, Joshua
  • Fryszkowska, Anna
  • Rodriguez-Granillo, Agustina
  • Murphy, Grant

Abstract

The present invention provides engineered pantothenate kinase (PanK) enzymes, polypeptides having PanK activity, and polynucleotides encoding these enzymes, as well as vectors and host cells comprising these polynucleotides and polypeptides. Methods for producing PanK enzymes are also provided. The present invention further provides compositions comprising the PanK enzymes and methods of using the engineered PanK enzymes. The present invention finds particular use in the production of pharmaceutical compounds.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)

27.

PENICILLIN-G ACYLASES

      
Application Number 18813482
Status Pending
Filing Date 2024-08-23
First Publication Date 2024-12-12
Owner Codexis, Inc. (USA)
Inventor
  • Alvizo, Oscar
  • Elgart, David
  • Orr, Robert Kevin
  • Riggins, James Nicholas
  • Fryszkowska, Anna
  • Lexa, Katrina W.
  • Yi, Xiang
  • Duan, Da
  • Moffett, Courtney Dianne
  • Dellas, Nikki
  • Mitchell, Vesna

Abstract

The present invention provides engineered penicillin G acylase (PGA) enzymes, polynucleotides encoding the enzymes, compositions comprising the enzymes, and methods of using the engineered PGA enzymes.

IPC Classes  ?

  • C12N 9/84 - Penicillin amidase
  • C07K 14/62 - Insulins
  • C12P 21/02 - Preparation of peptides or proteins having a known sequence of two or more amino acids, e.g. glutathione

28.

ENGINEERED PROTEASE POLYPEPTIDES

      
Application Number 18679281
Status Pending
Filing Date 2024-05-30
First Publication Date 2024-12-12
Owner
  • Codexis, Inc. (USA)
  • Société des Produits Nestlé S.A. (Switzerland)
Inventor
  • Chng, Chinping
  • Cong, Ruth L.
  • Duan, Da
  • Ferrer, Brian
  • Garcia, Ravi David
  • Kruse, Nikki D.
  • Kumar, Hirdesh
  • Millet, Stephen Joshua Macaso
  • Windgassen, Trica
  • Zhu, Liang

Abstract

The present disclosure provides engineered protease polypeptides, recombinant polynucleotides encoding the engineered protease polypeptides, and uses of the engineered protease polypeptides in therapeutic applications.

IPC Classes  ?

  • C12N 9/54 - Proteinases derived from bacteria bacteria being Bacillus
  • C12N 9/96 - Stabilising an enzyme by forming an adduct or a compositionForming enzyme conjugates

29.

ENGINEERED PROTEASE POLYPEPTIDES

      
Application Number US2024031771
Publication Number 2024/249694
Status In Force
Filing Date 2024-05-30
Publication Date 2024-12-05
Owner
  • CODEXIS, INC. (USA)
  • SOCIETE DES PRODUITS NESTLE S.A. (Switzerland)
Inventor
  • Chng, Chinping
  • Cong, Ruth, L.
  • Duan, Da
  • Ferrer, Brian
  • Garcia, Ravi, David
  • Kruse, Nikki, D.
  • Kumar, Hirdesh
  • Millet, Stephen, Joshua, Macaso
  • Windgassen, Tricia
  • Zhu, Liang

Abstract

The present disclosure provides engineered protease polypeptides, recombinant polynucleotides encoding the engineered protease polypeptides, and uses of the engineered protease polypeptides in therapeutic applications.

IPC Classes  ?

  • C11D 3/386 - Preparations containing enzymes
  • C12N 9/54 - Proteinases derived from bacteria bacteria being Bacillus
  • C12N 9/64 - Proteinases derived from animal tissue, e.g. rennin

30.

ENGINEERED RNA POLYMERASE VARIANTS

      
Application Number US2024028987
Publication Number 2024/238409
Status In Force
Filing Date 2024-05-10
Publication Date 2024-11-21
Owner
  • CODEXIS, INC. (USA)
  • PFIZER INC. (USA)
Inventor
  • Artz, Jacob, Hansen
  • Camacho Hernandez, Martha
  • Fell, Jason
  • Miller, Mathew, G.
  • Nazor, Jovana
  • Nguyen, James, D.
  • Patel, Anand
  • Rui, Zhe

Abstract

The present disclosure relates to engineered RNA polymerase polypeptides and compositions thereof, as well as polynucleotides encoding the engineered RNA polymerase polypeptides. The present disclosure also provides methods of using the engineered RNA polymerase polypeptides or compositions thereof for producing RNA.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12P 19/34 - Polynucleotides, e.g. nucleic acids, oligoribonucleotides

31.

ENGINEERED RNA POLYMERASE VARIANTS

      
Application Number US2024028783
Publication Number 2024/238327
Status In Force
Filing Date 2024-05-10
Publication Date 2024-11-21
Owner CODEXIS, INC. (USA)
Inventor
  • Camacho Hernandez, Martha
  • Miller, Mathew, G.
  • Nazor, Jovana
  • Nguyen, James, D.
  • Patel, Anand
  • Rui, Zhe

Abstract

The present disclosure relates to engineered RNA polymerase polypeptides and compositions thereof, as well as polynucleotides encoding the engineered RNA polymerase polypeptides. The present disclosure also provides methods of using the engineered RNA polymerase polypeptides or compositions thereof for producing RNA.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12P 19/34 - Polynucleotides, e.g. nucleic acids, oligoribonucleotides

32.

ENGINEERED AMYLASE VARIANTS

      
Application Number 18789167
Status Pending
Filing Date 2024-07-30
First Publication Date 2024-11-21
Owner
  • Codexis, Inc. (USA)
  • Societe des Produits Nestle S.A. (Switzerland)
Inventor
  • Chng, Chinping
  • Dellas, Nikki
  • Duan, Da
  • Garcia, Ravi David
  • Maniar, Harvinder Chagger

Abstract

The present invention provides engineered amylase polypeptides and compositions thereof. The engineered amylase polypeptides have been optimized to provide improved thermostability, protease stability, and stability under a range of pH conditions, including acidic (pH<7) conditions. The invention also relates to the use of the compositions comprising the engineered amylase polypeptides for therapeutic and/or nutritional purposes. The present invention also provides polynucleotides encoding the engineered amylase polypeptides, as well as methods for making the engineered polynucleotides and amylase polypeptides.

IPC Classes  ?

  • C12N 9/26 - Hydrolases (3.) acting on glycosyl compounds (3.2) acting on alpha-1, 4-glucosidic bonds, e.g. hyaluronidase, invertase, amylase
  • A61K 38/47 - Hydrolases (3) acting on glycosyl compounds (3.2), e.g. cellulases, lactases
  • A61P 1/18 - Drugs for disorders of the alimentary tract or the digestive system for pancreatic disorders, e.g. pancreatic enzymes

33.

RNA POLYMERASE VARIANTS

      
Application Number US2024028884
Publication Number 2024/238367
Status In Force
Filing Date 2024-05-10
Publication Date 2024-11-21
Owner CODEXIS, INC. (USA)
Inventor
  • Bakhtina, Marina, Mikhailovna
  • Copeland, Rachelle
  • Duran, Aldo
  • Knight, Anders, Matthew
  • Mayo, Melissa, Ann

Abstract

The present disclosure relates to engineered RNA polymerase polypeptides and compositions thereof, as well as polynucleotides encoding the engineered RNA polymerase polypeptides. The present disclosure also provides methods of using the engineered RNA polymerase polypeptides or compositions thereof for producing RNA.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12P 19/34 - Polynucleotides, e.g. nucleic acids, oligoribonucleotides

34.

ECO SYNTHESIS

      
Serial Number 98863642
Status Pending
Filing Date 2024-11-20
Owner Codexis, Inc. ()
NICE Classes  ? 40 - Treatment of materials; recycling, air and water treatment,

Goods & Services

RNA manufacturing services for others utilizing proprietary enzymatic technologies to enable nucleic acid therapeutics development

35.

ENGINEERED RNA POLYMERASE VARIANTS

      
Application Number 18660729
Status Pending
Filing Date 2024-05-10
First Publication Date 2024-11-14
Owner CODEXIS, INC. (USA)
Inventor
  • Camacho Hernandez, Martha
  • Miller, Mathew G.
  • Nazor, Jovana
  • Nguyen, James D.
  • Patel, Anand
  • Rui, Zhe

Abstract

The present disclosure relates to engineered RNA polymerase polypeptides and compositions thereof, as well as polynucleotides encoding the engineered RNA polymerase polypeptides. The present disclosure also provides methods of using the engineered RNA polymerase polypeptides or compositions thereof for producing RNA.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 9/14 - Hydrolases (3.)
  • C12N 9/16 - Hydrolases (3.) acting on ester bonds (3.1)
  • C12N 15/63 - Introduction of foreign genetic material using vectorsVectorsUse of hosts thereforRegulation of expression

36.

RNA POLYMERASE VARIANTS

      
Application Number 18660851
Status Pending
Filing Date 2024-05-10
First Publication Date 2024-11-14
Owner CODEXIS, INC. (USA)
Inventor
  • Bakhtina, Marina Mikhailovna
  • Copeland, Rachelle
  • Duran, Aldo
  • Knight, Anders Matthew
  • Mayo, Melissa Ann

Abstract

The present disclosure relates to engineered RNA polymerase polypeptides and compositions thereof, as well as polynucleotides encoding the engineered RNA polymerase polypeptides. The present disclosure also provides methods of using the engineered RNA polymerase polypeptides or compositions thereof for producing RNA.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 9/14 - Hydrolases (3.)

37.

ENGINEERED RNA POLYMERASE VARIANTS

      
Application Number 18661523
Status Pending
Filing Date 2024-05-10
First Publication Date 2024-11-14
Owner CODEXIS, INC. (USA)
Inventor
  • Artz, Jacob Hansen
  • Camacho Hernandez, Martha
  • Fell, Jason
  • Miller, Mathew G.
  • Nazor, Jovana
  • Nguyen, James D.
  • Patel, Anand
  • Rui, Zhe
  • Abyad, Jenna Tawil
  • Juhn, Hugo
  • Lotvin, Jason Arnold
  • Liu, Qi
  • Sztuba-Solinska, Joanna

Abstract

The present disclosure relates to engineered RNA polymerase polypeptides and compositions thereof, as well as polynucleotides encoding the engineered RNA polymerase polypeptides. The present disclosure also provides methods of using the engineered RNA polymerase polypeptides or compositions thereof for producing RNA.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 15/63 - Introduction of foreign genetic material using vectorsVectorsUse of hosts thereforRegulation of expression

38.

LOV-D ACYLTRANSFERASE MEDIATED ACYLATION

      
Application Number 18781007
Status Pending
Filing Date 2024-07-23
First Publication Date 2024-11-07
Owner Codexis Inc. (USA)
Inventor
  • Collier, Steven J.
  • Teo, Ee Ling
  • Sukumaran, Joly
  • Wilson, Robert J.
  • Xu, Junye

Abstract

Methods for the improved acylation of chemical substrates using LovD acyltransferases, thioesters having acyl groups, and (i) thiol scavengers and/or (ii) precipitating agents are presented. An improved method for the production of simvastatin using (i) activated charcoal as a thiol scavenger and/or (ii) ammonium hydroxide as a precipitating agent is also presented.

IPC Classes  ?

  • C12P 17/06 - Oxygen as only ring hetero atoms containing a six-membered hetero ring, e.g. fluorescein
  • C07K 14/00 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof
  • C12N 9/10 - Transferases (2.)
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12P 7/62 - Carboxylic acid esters

39.

P450-BM3 VARIANTS WITH IMPROVED ACTIVITY

      
Application Number US2023080715
Publication Number 2024/196434
Status In Force
Filing Date 2023-11-21
Publication Date 2024-09-26
Owner CODEXIS, INC. (USA)
Inventor
  • Entwistle, David
  • Fell, Jason
  • Jenne, Stephan
  • Knight, Anders Matthew
  • Ng, Simon
  • Reeves, Ryan D.
  • Seibel, Zara Maxine
  • Vroom, Jonathan

Abstract

terttert-Butoxycarbonylaminocyclopentanoic acid substrate.

IPC Classes  ?

  • A61K 38/41 - Porphyrin- or corrin-ring-containing peptides
  • C07K 14/80 - Cytochromes
  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes

40.

P450-BM3 VARIANTS WITH IMPROVED ACTIVITY

      
Application Number 18516054
Status Pending
Filing Date 2023-11-21
First Publication Date 2024-09-26
Owner CODEXIS, INC. (USA)
Inventor
  • Entwistle, David
  • Fell, Jason
  • Jenne, Stephan
  • Knight, Anders Matthew
  • Ng, Simon
  • Reeves, Ryan D.
  • Seibel, Zara Maxine
  • Vroom, Jonathan

Abstract

The present invention provides improved P450-BM3 variants with improved activity. In some embodiments, the P450-BM3 variants exhibit improved activity on a 1-tert-Butoxycarbonylaminocyclopentanoic acid substrate.

IPC Classes  ?

  • C12N 9/02 - Oxidoreductases (1.), e.g. luciferase

41.

ENGINEERED DNA LIGASE VARIANTS

      
Application Number 18420040
Status Pending
Filing Date 2024-01-23
First Publication Date 2024-09-19
Owner Codexis, Inc. (USA)
Inventor
  • Artz, Jacob Hansen
  • Copeland, Rachelle
  • Fell, Jason
  • Knight, Anders Matthew
  • Krawczyk, Mikayla Jianghongxia
  • Miller, Mathew G.
  • Nazor, Jovana
  • Shoubber, Amani
  • Vroom, Jonathan

Abstract

The present disclosure relates to engineered DNA ligase polypeptides and compositions thereof, as well as polynucleotides encoding the engineered DNA ligase polypeptides. The present disclosure also provides methods of using the engineered DNA ligase polypeptides or compositions thereof in diagnostics and as a molecular biological tool.

IPC Classes  ?

  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes

42.

PEROXIDASE ACTIVITY TOWARDS 10-ACETYL-3,7-DIHYDROXYPHENOXAZINE

      
Application Number 18655701
Status Pending
Filing Date 2024-05-06
First Publication Date 2024-09-12
Owner Codexis, Inc. (USA)
Inventor
  • Duan, Da
  • Sowell-Kantz, Auric Anthony
  • Petkova, Aksiniya Lyubenova
  • Nazor, Jovana
  • Subramanian, Nandhitha
  • Alvizo, Oscar

Abstract

The present invention provides engineered peroxidase enzymes, polypeptides having peroxidase activity, and polynucleotides encoding these enzymes, as well as vectors and host cells comprising these polynucleotides and polypeptides. Methods for producing peroxidase enzymes are also provided. The present invention further provides compositions comprising the peroxidase enzymes and methods of using the engineered peroxidase enzymes. The present invention finds particular use in the production of pharmaceutical and other compounds.

IPC Classes  ?

  • C12N 9/08 - Oxidoreductases (1.), e.g. luciferase acting on hydrogen peroxide as acceptor (1.11)

43.

KETOREDUCTASE POLYPEPTIDES FOR THE PREPARATION OF PHENYLEPHRINE

      
Application Number 18671324
Status Pending
Filing Date 2024-05-22
First Publication Date 2024-09-12
Owner Codexis, Inc. (USA)
Inventor
  • Alvizo, Oscar
  • Collier, Steven J.
  • Hennemann, Hans-Georg Joerg
  • Oh, Seong Ho
  • Zha, Wenjuan

Abstract

The disclosure relates to engineered ketoreductase polypeptides and processes of using the polypeptides for production of phenylephrine.

IPC Classes  ?

  • C12N 9/04 - Oxidoreductases (1.), e.g. luciferase acting on CHOH groups as donors, e.g. glucose oxidase, lactate dehydrogenase (1.1)
  • A61K 31/137 - Arylalkylamines, e.g. amphetamine, epinephrine, salbutamol, ephedrine
  • C12P 13/00 - Preparation of nitrogen-containing organic compounds

44.

ENGINEERED GALACTOSE OXIDASE VARIANT ENZYMES

      
Application Number 18657101
Status Pending
Filing Date 2024-05-07
First Publication Date 2024-08-29
Owner Codexis, Inc. (USA)
Inventor
  • Micklitsch, Christopher
  • Alvizo, Oscar
  • Nazor, Jovana
  • Maniar, Harvinder Chagger
  • Krawczyk, Mikayla Jianghongxia
  • Borra-Garske, Margie Tabuga
  • Subramanian, Nandhitha
  • Fryszkowska, Anna
  • Marshall, Nicholas M.
  • Rodriguez-Granillo, Agustina
  • Verma, Deeptak
  • Andrews, Dewan

Abstract

The present invention provides engineered galactose oxidase (GOase) enzymes, polypeptides having GOase activity, and polynucleotides encoding these enzymes, as well as vectors and host cells comprising these polynucleotides and polypeptides. Methods for producing GOase enzymes are also provided. The present invention further provides compositions comprising the GOase enzymes and methods of using the engineered GOase enzymes. The present invention finds particular use in the production of pharmaceutical and other compounds.

IPC Classes  ?

  • C12N 9/04 - Oxidoreductases (1.), e.g. luciferase acting on CHOH groups as donors, e.g. glucose oxidase, lactate dehydrogenase (1.1)
  • C12N 9/02 - Oxidoreductases (1.), e.g. luciferase
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12P 21/02 - Preparation of peptides or proteins having a known sequence of two or more amino acids, e.g. glutathione

45.

NEURAL SPHEROIDS

      
Application Number US2024015808
Publication Number 2024/173561
Status In Force
Filing Date 2024-02-14
Publication Date 2024-08-22
Owner CODEXIS, INC. (USA)
Inventor
  • Lee, Grace, Sohee
  • Schmitt, Christopher, Edward

Abstract

The present disclosure provides a method of preparing neural spheroids, the neural spheroid prepared by the method, and uses of the neural spheroids. In some embodiments, the present disclosure provides a method of forming neural spheroids, a three dimensional network of cells comprising neural and glial cells, where the method comprises culturing differentiated fore brain progenitor cells in a cell culture well having an ultra-low attachment surface and shaped to promote self-assembly of cells into neural spheroids.

IPC Classes  ?

  • C12N 5/0797 - Stem cellsProgenitor cells
  • C12N 5/00 - Undifferentiated human, animal or plant cells, e.g. cell linesTissuesCultivation or maintenance thereofCulture media therefor
  • C12N 5/074 - Adult stem cells
  • C12N 5/0789 - Stem cellsMultipotent progenitor cells
  • C12N 5/079 - Neural cells
  • C12N 5/07 - Animal cells or tissues
  • G01N 33/50 - Chemical analysis of biological material, e.g. blood, urineTesting involving biospecific ligand binding methodsImmunological testing

46.

ENGINEERED DNA POLYMERASE VARIANTS

      
Application Number 18628461
Status Pending
Filing Date 2024-04-05
First Publication Date 2024-08-08
Owner Codexis, Inc. (USA)
Inventor
  • Miller, Mathew G.
  • Mitchell, Vesna
  • Nazor, Jovana
  • Baskerville, Donald S.
  • Dellas, Nikki
  • Elgart, David
  • Vroom, Jonathan
  • Gomes, Sandy M.
  • Subramanian, Nandhitha
  • Bermudez, Ericka

Abstract

The present invention provides engineered DNA polymerase polypeptides and compositions thereof, as well as polynucleotides encoding the engineered DNA polymerase polypeptides. The invention also provides methods for use of the compositions comprising the engineered DNA polymerase polypeptides for diagnostic and other purposes.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)

47.

ENGINEERED GLUCOCEREBROSIDASE VARIANTS

      
Application Number US2024014039
Publication Number 2024/163765
Status In Force
Filing Date 2024-02-01
Publication Date 2024-08-08
Owner CODEXIS, INC. (USA)
Inventor
  • Artz, Jacob, Hansen
  • Botham, Rachel, Cathleen
  • Chen, Xingxiu
  • Francisco, Victorino, Miguel
  • Hallows, William, Casey
  • Heredia, Jeremiah, Dallas
  • Johnson, Londen, Christine
  • Millar, Douglas, Chamberlain
  • Onguka, Ouma
  • Schmitt, Christopher, Edward
  • Silverman, Adam, P.

Abstract

The present disclosure provides engineered glucocerebrosidases, polynucleotides encoding the engineered glucocerebrosidases, and methods of treating a deficiency in glucocerebroside activity using the engineered glucocerebrosidases or the recombinant polynucleotides encoding the engineered glucocerebrosidases.

IPC Classes  ?

  • A61K 38/47 - Hydrolases (3) acting on glycosyl compounds (3.2), e.g. cellulases, lactases
  • A61K 48/00 - Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseasesGene therapy
  • C07K 14/00 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof
  • C12N 9/16 - Hydrolases (3.) acting on ester bonds (3.1)
  • C12N 9/24 - Hydrolases (3.) acting on glycosyl compounds (3.2)
  • C12N 9/38 - Hydrolases (3.) acting on glycosyl compounds (3.2) acting on beta-galactose-glycoside bonds, e.g. beta-galactosidase
  • C12N 9/42 - Hydrolases (3.) acting on glycosyl compounds (3.2) acting on beta-1, 4-glucosidic bonds, e.g. cellulase
  • C12N 15/86 - Viral vectors

48.

ENGINEERED AAV POLYPEPTIDES

      
Application Number US2024014362
Publication Number 2024/163979
Status In Force
Filing Date 2024-02-02
Publication Date 2024-08-08
Owner CODEXIS, INC. (USA)
Inventor
  • Akeefe, Hassibullah
  • Chng, Chinping
  • Del Greco, Elizabeth
  • Desautel, Sarah
  • Gebretsadik, Kahsay
  • Kruse, Nikki, D.
  • Kumar, Ambuj
  • Rivera-Velazquez, Mirella
  • Rohovie, Marcus
  • Schmitt, Christopher, Edward
  • Sedighi, Faezeh
  • Sero, Antoinette
  • Silverman, Adam, P.
  • Wong, Victoria

Abstract

The present disclosure provides engineered AAV capsid polypeptides, engineered MAAP polypeptides, and engineered AAP polypeptides as well as recombinant polynucleotides encoding the engineered AAV polypeptides. The present disclosure further provides use of the engineered AAV polypeptides and recombinant polynucleotides for producing rAAV viruses or rAAV virions.

IPC Classes  ?

  • C07K 14/005 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from viruses
  • C12N 15/86 - Viral vectors
  • C12N 7/00 - Viruses, e.g. bacteriophagesCompositions thereofPreparation or purification thereof
  • A61K 48/00 - Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseasesGene therapy

49.

ENGINEERED DNA LIGASE VARIANTS

      
Application Number US2024012543
Publication Number 2024/158764
Status In Force
Filing Date 2024-01-23
Publication Date 2024-08-02
Owner CODEXIS, INC. (USA)
Inventor
  • Artz, Jacob Hansen
  • Copeland, Rachelle
  • Fell, Jason
  • Knight, Anders Matthew
  • Krawczyk, Mikayla Jianghongxia
  • Miller, Mathew G.
  • Nazor, Jovana
  • Shoubber, Amani
  • Vroom, Jonathan

Abstract

The present disclosure relates to engineered DNA ligase polypeptides and compositions thereof, as well as polynucleotides encoding the engineered DNA ligase polypeptides. The present disclosure also provides methods of using the engineered DNA ligase polypeptides or compositions thereof in diagnostics and as a molecular biological tool.

IPC Classes  ?

  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes
  • C12N 15/11 - DNA or RNA fragmentsModified forms thereof
  • C12N 15/63 - Introduction of foreign genetic material using vectorsVectorsUse of hosts thereforRegulation of expression

50.

ENGINEERED IMINE REDUCTASES AND METHODS FOR THE REDUCTIVE AMINATION OF KETONE AND AMINE COMPOUNDS

      
Application Number 18638060
Status Pending
Filing Date 2024-04-17
First Publication Date 2024-08-01
Owner Codexis, Inc. (USA)
Inventor
  • Borra-Garsek, Margie
  • Alvizo, Oscar
  • Mayo, Melissa
  • Jenne, Stephan
  • Sowell-Kantz, Auric Anthoney
  • Molinaro, Carmela

Abstract

The present application provides engineered polypeptides having imine or oxime reductase activity, polynucleotides encoding the engineered polypeptides, host cells capable of expressing the engineered polypeptides, and methods of using these engineered polypeptides with a range of ketone and amine substrate compounds to prepare secondary and tertiary amine product compounds.

IPC Classes  ?

  • C12N 9/06 - Oxidoreductases (1.), e.g. luciferase acting on nitrogen containing compounds as donors (1.4, 1.5, 1.7)
  • C12N 9/02 - Oxidoreductases (1.), e.g. luciferase

51.

KETOREDUCTASE POLYPEPTIDES FOR THE PRODUCTION OF (R)-3-HYDROXYTHIOLANE

      
Application Number 18614099
Status Pending
Filing Date 2024-03-22
First Publication Date 2024-07-11
Owner Codexis, Inc. (USA)
Inventor
  • Liang, Jack S.
  • Jenne, Stephan
  • Mundorff, Emily
  • Voladri, Rama
  • Lalonde, James J.
  • Huisman, Gjalt W.

Abstract

The present disclosure provides engineered ketoreductase enzymes having improved properties as compared to a naturally occurring wild-type ketoreductase enzyme. Also provided are polynucleotides encoding the engineered ketoreductase enzymes, host cells capable of expressing the engineered ketoreductase enzymes, and methods of using the engineered ketoreductase enzymes to synthesize chiral compounds.

IPC Classes  ?

  • C12P 17/00 - Preparation of heterocyclic carbon compounds with only O, N, S, Se, or Te as ring hetero atoms
  • C12N 9/04 - Oxidoreductases (1.), e.g. luciferase acting on CHOH groups as donors, e.g. glucose oxidase, lactate dehydrogenase (1.1)
  • C12P 17/16 - Preparation of heterocyclic carbon compounds with only O, N, S, Se, or Te as ring hetero atoms containing two or more hetero rings

52.

ENGINEERED IMINE REDUCTASES AND METHODS FOR THE REDUCTIVE AMINATION OF KETONE AND AMINE COMPOUNDS

      
Application Number 18471524
Status Pending
Filing Date 2023-09-21
First Publication Date 2024-07-11
Owner Codexis, Inc. (USA)
Inventor
  • Alvizo, Oscar
  • Mayo, Melissa Ann
  • Moore, Jeffrey C.

Abstract

The present application provides engineered polypeptides having imine reductase activity, polynucleotides encoding the engineered imine reductases, host cells capable of expressing the engineered imine reductases, and methods of using these engineered polypeptides with a range of ketone and amine substrate compounds to prepare secondary and tertiary amine product compounds.

IPC Classes  ?

  • C12N 9/06 - Oxidoreductases (1.), e.g. luciferase acting on nitrogen containing compounds as donors (1.4, 1.5, 1.7)
  • C12P 13/00 - Preparation of nitrogen-containing organic compounds

53.

VARIANT LOVD POLYPEPTIDES AND THEIR USES

      
Application Number 18432802
Status Pending
Filing Date 2024-02-05
First Publication Date 2024-07-04
Owner Codexis, Inc. (USA)
Inventor
  • Gilson, Lynne
  • Collier, Steven J.
  • Sukumaran, Joly
  • Yeo, Wan Lin
  • Alvizo, Oscar
  • Teo, Ee Ling
  • Wilson, Robert J.
  • Xu, Junye

Abstract

The present disclosure provides acyltransferases useful for synthesizing therapeutically important statin compound.

IPC Classes  ?

  • C12P 17/06 - Oxygen as only ring hetero atoms containing a six-membered hetero ring, e.g. fluorescein
  • C07K 14/00 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof
  • C12N 9/10 - Transferases (2.)
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12P 7/62 - Carboxylic acid esters

54.

ENGINEERED RNASE INHIBITOR VARIANTS

      
Application Number US2023085570
Publication Number 2024/138074
Status In Force
Filing Date 2023-12-21
Publication Date 2024-06-27
Owner CODEXIS, INC. (USA)
Inventor
  • Knight, Anders, Matthew
  • Ng, Simon

Abstract

The present disclosure relates to engineered RNase inhibitor polypeptides and compositions thereof, as well as polynucleotides encoding the engineered RNase inhibitor polypeptides. The present disclosure also provides methods of using the engineered RNase inhibitor polypeptides or compositions thereof for molecular biological, diagnostic and other purposes.

IPC Classes  ?

  • C07K 14/47 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from animalsPeptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from humans from vertebrates from mammals
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • C12N 15/74 - Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora
  • C12N 15/79 - Vectors or expression systems specially adapted for eukaryotic hosts
  • C12Q 1/6806 - Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay

55.

ENGINEERED RNA LIGASE VARIANTS

      
Application Number US2023085838
Publication Number 2024/138200
Status In Force
Filing Date 2023-12-22
Publication Date 2024-06-27
Owner CODEXIS, INC. (USA)
Inventor
  • Copeland, Rachelle
  • Elgart, David
  • Fell, Jason
  • Nazor, Jovana
  • Wong, Leland, Ken
  • Rui, Zhe

Abstract

The present disclosure relates to engineered RNA ligase polypeptides and compositions thereof, as well as polynucleotides encoding the engineered RNA ligase polypeptides. The present disclosure also provides methods of using the engineered RNA ligase polypeptides or compositions thereof for molecular biological, diagnostic, and other purposes.

IPC Classes  ?

  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes
  • C12N 15/10 - Processes for the isolation, preparation or purification of DNA or RNA
  • C12N 15/11 - DNA or RNA fragmentsModified forms thereof

56.

ENGINEERED RNA LIGASE VARIANTS

      
Application Number 18395294
Status Pending
Filing Date 2023-12-22
First Publication Date 2024-06-27
Owner CODEXIS, INC. (USA)
Inventor
  • Copeland, Rachelle
  • Elgart, David
  • Fell, Jason
  • Nazor, Jovana
  • Wong, Leland Ken
  • Rui, Zhe

Abstract

The present disclosure relates to engineered RNA ligase polypeptides and compositions thereof, as well as polynucleotides encoding the engineered RNA ligase polypeptides. The present disclosure also provides methods of using the engineered RNA ligase polypeptides or compositions thereof for molecular biological, diagnostic, and other purposes.

IPC Classes  ?

  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes
  • C12Q 1/6813 - Hybridisation assays

57.

ENGINEERED 3-O-KINASE VARIANTS AND METHODS OF USE

      
Application Number 18485925
Status Pending
Filing Date 2023-10-12
First Publication Date 2024-06-27
Owner Codexis, Inc. (USA)
Inventor
  • Entwistle, David
  • Forgel, Stephanie Marie
  • Knight, Anders Matthew
  • Krawczyk, Mikayla
  • Provencher, Philip
  • Shoubber, Amani
  • Vroom, Jonathan
  • Watts, David
  • Wong, Leland

Abstract

The present invention provides engineered 3′O-kinase polypeptides useful for construction of materials used in template-independent polynucleotide synthesis, as well as compositions and methods of utilizing these engineered polypeptides. The present disclosure also describes one-pot methods for conversion of a natural or modified nucleoside to a nucleoside tetraphosphate or NQP.

IPC Classes  ?

  • C12P 19/38 - Nucleosides
  • C12N 9/02 - Oxidoreductases (1.), e.g. luciferase
  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)

58.

ENZYMATIC SYNTHESIS OF NTP AND NQP

      
Application Number 18486140
Status Pending
Filing Date 2023-10-12
First Publication Date 2024-06-27
Owner CODEXIS, INC. (USA)
Inventor
  • Entwistle, David
  • Forget, Stephanie Marie
  • Knight, Anders Matthew
  • Krawczyk, Mikayla Jianghongxia
  • Macavoy, Marissa Greene
  • Ng, Simon
  • Porter, Nicholas
  • Provencher, Philip
  • Shoubber, Amani
  • Teadt, Leann Quertinmont
  • Vroom, Jonathan
  • Watts, David
  • Wong, Leland Ken

Abstract

The present disclosure provides enzymatic methods for the production of 3′-phosphate-nucleoside-5′-triphosphate (NQP). The present disclosure further provides enzymatic methods for the production of nucleotide-5′-triphosphates.

IPC Classes  ?

  • C12P 19/34 - Polynucleotides, e.g. nucleic acids, oligoribonucleotides
  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)

59.

ENGINEERED 3'O-KINASE VARIANTS AND METHODS OF USE

      
Application Number US2023076694
Publication Number 2024/129232
Status In Force
Filing Date 2023-10-12
Publication Date 2024-06-20
Owner CODEXIS, INC. (USA)
Inventor
  • Entwistle, David
  • Forget, Stephanie Marie
  • Knight, Anders Matthew
  • Krawczyk, Mikayla
  • Provencher, Philip
  • Shoubber, Amani
  • Vroom, Jonathan
  • Watts, David
  • Wong, Leland

Abstract

The present invention provides engineered 3'O-kinase polypeptides useful for construction of materials used in template-independent polynucleotide synthesis, as well as compositions and methods of utilizing these engineered polypeptides. The present disclosure also describes one-pot methods for conversion of a natural or modified nucleoside to a nucleoside tetraphosphate or NQP.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 9/10 - Transferases (2.)
  • C07K 14/32 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from bacteria from Bacillus (G)
  • A61K 38/45 - Transferases (2)

60.

ENZYMATIC SYNTHESIS OF NTP AND NQP

      
Application Number US2023076751
Publication Number 2024/129235
Status In Force
Filing Date 2023-10-12
Publication Date 2024-06-20
Owner CODEXIS, INC. (USA)
Inventor
  • Entwistle, David
  • Forget, Stephanie, Marie
  • Knight, Anders, Matthew
  • Krawczyk, Mikayla, Jianghongxia
  • Macavoy, Marissa, Greene
  • Ng, Simon
  • Porter, Nicholas
  • Provencher, Philip
  • Shoubber, Amani
  • Teadt, Leann, Quertinmont
  • Vroom, Jonathan
  • Watts, David
  • Wong, Leland, Ken

Abstract

The present disclosure provides enzymatic methods for the production of 3'-phosphate-nucleoside-5'-triphosphate (NQP). The present disclosure further provides enzymatic methods for the production of nucleotide-5'-triphosphates.

IPC Classes  ?

  • C07H 21/02 - Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids with ribosyl as saccharide radical
  • C12N 9/22 - Ribonucleases
  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 9/30 - Fungal source
  • C12P 19/10 - Pullulan
  • C12P 19/38 - Nucleosides

61.

P450-BM3 VARIANTS WITH IMPROVED ACTIVITY

      
Application Number 18516310
Status Pending
Filing Date 2023-11-21
First Publication Date 2024-06-13
Owner CODEXIS, INC. (USA)
Inventor
  • Borra-Garske, Margie Tabuga
  • Hurtak, Jessica Anna
  • Knight, Anders Matthew
  • Krishnamoorthy, Kalyanaraman
  • Nazor, Jovana
  • Riggins, James Nicholas
  • Subramanian, Nandhitha
  • Vroom, Jonathan

Abstract

The present invention provides improved P450-BM3 variants with improved activity. In some embodiments, the P450-BM3 variants exhibit improved activity on indanone substrates.

IPC Classes  ?

  • C07K 14/195 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from bacteria

62.

Engineered Terminal Deoxynucleotidyl Transferase Variants

      
Application Number 18485855
Status Pending
Filing Date 2023-10-12
First Publication Date 2024-06-06
Owner Codexis, Inc. (USA)
Inventor
  • Entwistle, David
  • Forget, Stephanie
  • Li, Michelle
  • Mahmoodi, Niusha
  • Reeves, Ryan
  • Vojcic, Ljubica
  • Vroom, Jonathan
  • Watts, David
  • Wong, Leland Ken

Abstract

The present invention provides engineered terminal deoxynucleotidyl transferase (TdT) polypeptides useful in template-independent polynucleotide synthesis, as well as compositions, methods of utilizing these engineered polypeptides, and polynucleotides encoding the engineered terminal deoxynucleotidyl transferases.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 15/63 - Introduction of foreign genetic material using vectorsVectorsUse of hosts thereforRegulation of expression

63.

P450-BM3 VARIANTS WITH IMPROVED ACTIVITY

      
Application Number US2023080728
Publication Number 2024/112781
Status In Force
Filing Date 2023-11-21
Publication Date 2024-05-30
Owner CODEXIS, INC. (USA)
Inventor
  • Borra-Garske, Margie Tabuga
  • Hurtak, Jessica Anna
  • Knight, Anders Matthew
  • Krishnamoorthy, Kalyanaraman
  • Nazor, Jovana
  • Riggins, James Nicholas
  • Subramanian, Nandhitha
  • Vroom, Jonathan

Abstract

The present invention provides improved P450-BM3 variants with improved activity. In some embodiments, the P450-BM3 variants exhibit improved activity on indanone substrates.

IPC Classes  ?

  • C07K 14/80 - Cytochromes
  • A61K 38/41 - Porphyrin- or corrin-ring-containing peptides
  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes

64.

ENGINEERED ADENYLATE KINASE VARIANT ENZYMES

      
Application Number 18413338
Status Pending
Filing Date 2024-01-16
First Publication Date 2024-05-16
Owner Codexis, Inc. (USA)
Inventor
  • Duan, Da
  • Sowell-Kantz, Auric Anthony
  • Petkova, Aksiniya Lyubenova
  • Alvizo, Oscar

Abstract

The present invention provides engineered adenylate kinase (AdK) enzymes, polypeptides having AdK activity, and polynucleotides encoding these enzymes, as well as vectors and host cells comprising these polynucleotides and polypeptides. Methods for producing AdK enzymes are also provided. The present invention further provides compositions comprising the AdK enzymes and methods of using the engineered AdK enzymes. The present invention finds particular use in the production of pharmaceutical compounds.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)

65.

DNA POLYMERASE VARIANTS

      
Application Number US2023079158
Publication Number 2024/102861
Status In Force
Filing Date 2023-11-08
Publication Date 2024-05-16
Owner CODEXIS, INC. (USA)
Inventor
  • Bermudez, Ericka
  • Elgart, David
  • Fell, Jason
  • Li, Michelle
  • Macavoy, Marissa, Greene
  • Miller, Mathew, G.
  • Mitchell, Vesna
  • Nazor, Jovana
  • Nelson, Kevin, S.
  • Walker, Scotty
  • Muerhoff, Anthony, S.
  • Cheng, Shouqiang
  • Christensen, David
  • Case, Alicia
  • Marohnic, Christopher

Abstract

The present disclosure relates to engineered DNA polymerase polypeptides and compositions thereof, as well as polynucleotides encoding the engineered DNA polymerase polypeptides. The present disclosure also provides methods of using the engineered DNA polymerase polypeptides or compositions thereof for diagnostic and other purposes.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12Q 1/48 - Measuring or testing processes involving enzymes, nucleic acids or microorganismsCompositions thereforProcesses of preparing such compositions involving transferase
  • C12Q 1/6897 - Measuring or testing processes involving enzymes, nucleic acids or microorganismsCompositions thereforProcesses of preparing such compositions involving nucleic acids involving reporter genes operably linked to promoters

66.

ENGINEERED VACCINIA CAPPING ENZYME VARIANTS

      
Application Number US2023078328
Publication Number 2024/097739
Status In Force
Filing Date 2023-11-01
Publication Date 2024-05-10
Owner CODEXIS, INC. (USA)
Inventor
  • Bakhtina, Marina, Mikhailovna
  • Borra-Garske, Margie, Tabuga
  • Fell, Jason
  • Jenne, Stephan
  • Krishnamoorthy, Kalyanaraman
  • Kruse, Nikki, D.
  • Mayo, Melissa, Ann
  • Nazor, Jovana
  • Petkova, Aksiniya, Lyubenova
  • Rohovie, Marcus

Abstract

The present invention provides engineered vaccina capping enzyme and vaccinia virus capping enzyme polypeptides and compositions thereof, as well as polynucleotides encoding the engineered vaccinia capping enzyme and vaccinia virus capping enzyme subunit polypeptides. The disclosure also provides methods for use of the engineered vaccina capping enzymes and vaccinia virus capping enzyme subunits, as well as compositions thereof for diagnostic, molecular biological tools, and other purposes.

IPC Classes  ?

  • C07K 14/005 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from viruses
  • C12N 15/33 - Genes encoding viral proteins
  • C12N 15/72 - Expression systems using regulatory sequences derived from the lac-operon
  • C12N 15/63 - Introduction of foreign genetic material using vectorsVectorsUse of hosts thereforRegulation of expression

67.

TRANSAMINASE POLYPEPTIDES

      
Application Number 18409699
Status Pending
Filing Date 2024-01-10
First Publication Date 2024-05-09
Owner Codexis, Inc. (USA)
Inventor
  • Dhawan, Ish K.
  • Miller, Gregory
  • Zhang, Xiyun

Abstract

The present disclosure provides engineered transaminase enzymes having improved properties as compared to a naturally occurring wild-type transaminase enzyme. Also provided are polynucleotides encoding the engineered transaminase enzymes, host cells capable of expressing the engineered transaminase enzymes, and methods of using the engineered transaminase enzymes to synthesize a variety of chiral compounds.

IPC Classes  ?

  • C12N 9/10 - Transferases (2.)
  • C12P 13/00 - Preparation of nitrogen-containing organic compounds
  • C12P 41/00 - Processes using enzymes or microorganisms to separate optical isomers from a racemic mixture

68.

ENGINEERED ACETATE KINASE VARIANT ENZYMES

      
Application Number 18420071
Status Pending
Filing Date 2024-01-23
First Publication Date 2024-05-09
Owner Codexis, Inc. (USA)
Inventor
  • Borra-Garske, Margie Tabuga
  • Alvizo, Oscar
  • Miller, Lillian Jasmine
  • Petkova, Aksiniya Lyubenova

Abstract

The present invention provides engineered acetate kinase (AcK) enzymes, polypeptides having AcK activity, and polynucleotides encoding these enzymes, as well as vectors and host cells comprising these polynucleotides and polypeptides. Methods for producing AcK enzymes are also provided. The present invention further provides compositions comprising the AcK enzymes and methods of using the engineered AcK enzymes. The present invention finds particular use in the production of pharmaceutical compounds.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)

69.

KETOREDUCTASE POLYPEPTIDES FOR THE PRODUCTION OF AZETIDINONE

      
Application Number 18472540
Status Pending
Filing Date 2023-09-22
First Publication Date 2024-05-02
Owner Codexis, Inc. (USA)
Inventor
  • Campopiano, Onorato
  • Mundorff, Emily
  • Borup, Birthe
  • Voladri, Rama

Abstract

The present disclosure provides engineered ketoreductase enzymes having improved properties as compared to a naturally occurring wild-type ketoreductase enzyme. Also provided are polynucleotides encoding the engineered ketoreductase enzymes, host cells capable of expressing the engineered ketoreductase enzymes, and methods of using the engineered ketoreductase enzymes to synthesize a variety of chiral compounds.

IPC Classes  ?

  • C12N 9/04 - Oxidoreductases (1.), e.g. luciferase acting on CHOH groups as donors, e.g. glucose oxidase, lactate dehydrogenase (1.1)
  • C12P 17/10 - Nitrogen as only ring hetero atom

70.

ENGINEERED URIDINE PHOSPHORYLASE VARIANT ENZYMES

      
Application Number 18403265
Status Pending
Filing Date 2024-01-03
First Publication Date 2024-04-25
Owner Codexis, Inc. (USA)
Inventor
  • Vroom, Jonathan
  • Hurtak, Jessica Anna
  • Knight, Anders Matthew

Abstract

The present invention provides engineered uridine phosphorylase (UP) enzymes, polypeptides having UP activity, and polynucleotides encoding these enzymes, as well as vectors and host cells comprising these polynucleotides and polypeptides. Methods for producing UP enzymes are also provided. The present invention further provides compositions comprising the UP enzymes and methods of using the engineered UP enzymes. The present invention finds particular use in the production of pharmaceutical compounds.

IPC Classes  ?

71.

ENGINEERED TERMINAL DEOXYNUCLEOTIDYL TRANSFERASE VARIANTS

      
Application Number US2023076667
Publication Number 2024/081770
Status In Force
Filing Date 2023-10-12
Publication Date 2024-04-18
Owner CODEXIS, INC. (USA)
Inventor
  • Entwistle, David
  • Forget, Stephanie
  • Li, Michelle
  • Mahmoodi, Niusha
  • Reeves, Ryan
  • Vojcic, Ljubica
  • Vroom, Jonathan
  • Watts, David
  • Wong, Leland

Abstract

The present invention provides engineered terminal deoxynucleotidyl transferase (TdT) polypeptides useful in template-independent polynucleotide synthesis, as well as compositions, methods of utilizing these engineered polypeptides, and polynucleotides encoding the engineered terminal deoxynucleotidyl transferases.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12P 19/34 - Polynucleotides, e.g. nucleic acids, oligoribonucleotides
  • C12Q 1/68 - Measuring or testing processes involving enzymes, nucleic acids or microorganismsCompositions thereforProcesses of preparing such compositions involving nucleic acids
  • C12P 19/30 - Nucleotides

72.

ENGINEERED DNA POLYMERASE VARIANTS

      
Application Number US2023073948
Publication Number 2024/059547
Status In Force
Filing Date 2023-09-12
Publication Date 2024-03-21
Owner CODEXIS, INC. (USA)
Inventor
  • Alvizo, Oscar
  • Bermudez, Ericka
  • Cai, Le
  • Dorigatti, Jonathan, Dewayne
  • Elgart, David
  • Fell, Jason
  • Gomes, Sandy, M.
  • Kadam, Supriya, Vijaykumar
  • Kumar, Ambuj
  • Li, Michelle
  • Macavoy, Marissa, Greene
  • Miller, Mathew, G.
  • Mitchell, Vesna
  • Nazor, Jovana

Abstract

The present invention relates to engineered DNA polymerase polypeptides and compositions thereof, as well as polynucleotides encoding the engineered DNA polymerase polypeptides. The present invention also provides methods of using the engineered DNA polymerase polypeptides or compositions thereof for diagnostic and other purposes.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12Q 1/48 - Measuring or testing processes involving enzymes, nucleic acids or microorganismsCompositions thereforProcesses of preparing such compositions involving transferase
  • C12Q 1/6897 - Measuring or testing processes involving enzymes, nucleic acids or microorganismsCompositions thereforProcesses of preparing such compositions involving nucleic acids involving reporter genes operably linked to promoters

73.

ENGINEERED DNA POLYMERASE VARIANTS

      
Application Number US2023073997
Publication Number 2024/059581
Status In Force
Filing Date 2023-09-12
Publication Date 2024-03-21
Owner CODEXIS, INC. (USA)
Inventor
  • Fell, Jason
  • Gomes, Sandy, M.
  • Kadam, Supriya, Vijaykumar
  • Knight, Anders, Matthew
  • Matzdorff, Larson, Lyle
  • Miller, Mathew, G.
  • Rui, Zhe

Abstract

The present disclosure relates to engineered DNA polymerase polypeptides and compositions thereof, as well as polynucleotides encoding the engineered DNA polymerase polypeptides. The present disclosure also provides methods of using the engineered DNA polymerase polypeptides or compositions thereof for diagnostic and other purposes.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12Q 1/48 - Measuring or testing processes involving enzymes, nucleic acids or microorganismsCompositions thereforProcesses of preparing such compositions involving transferase
  • C12Q 1/6897 - Measuring or testing processes involving enzymes, nucleic acids or microorganismsCompositions thereforProcesses of preparing such compositions involving nucleic acids involving reporter genes operably linked to promoters

74.

ENGINEERED DEOXYRIBOSE-PHOSPHATE ALDOLASES

      
Application Number 18503542
Status Pending
Filing Date 2023-11-07
First Publication Date 2024-03-07
Owner Codexis, Inc. (USA)
Inventor
  • Duan, Da
  • Alvizo, Oscar
  • Nazor, Jovana
  • Maniar, Harvinder Chagger
  • Riggins, James Nicholas
  • Vroom, Jonathan
  • Sivaramakrishnan, Santhosh
  • Yang, Hao
  • Fryszkowska, Anna
  • Huffman, Mark A.
  • Kolev, Joshua N.
  • Farasat, Iman
  • Rodriguez-Granillo, Agustina
  • Verma, Deeptak

Abstract

The present invention provides engineered deoxyribose-phosphate aldolase polypeptides useful under industrial process conditions for the production of pharmaceutical and fine chemical compounds.

IPC Classes  ?

75.

Ketoreductase polypeptides and polynucleotides

      
Application Number 18352899
Grant Number 12252723
Status In Force
Filing Date 2023-07-14
First Publication Date 2024-02-29
Grant Date 2025-03-18
Owner Codexis, Inc. (USA)
Inventor
  • Moore, Jeffrey C.
  • Liang, Jack
  • Penfield, Jonathan
  • Nazor, Jovana
  • Dellas, Nikki
  • Mitchell, Vesna
  • Duan, Da
  • Farasat, Iman
  • Rodriguez-Granillo, Agustina
  • Murphy, Grant
  • Marshall, Nicholas

Abstract

The present invention provides engineered ketoreductase and phosphite dehydrogenase enzymes having improved properties as compared to a naturally occurring wild-type ketoreductase and phosphite dehydrogenase enzymes, as well as polynucleotides encoding the engineered ketoreductase and phosphite dehydrogenase enzymes, host cells capable of expressing the engineered ketoreductase and phosphite dehydrogenase enzymes, and methods of using the engineered ketoreductase and phosphite dehydrogenase enzymes to synthesize a chiral catalyst used in the synthesis of antiviral compounds, such as nucleoside inhibitors. The present invention further provides methods of using the engineered enzymes to deracemize a chiral alcohol in a one-pot, multi-enzyme system.

IPC Classes  ?

  • C12P 41/00 - Processes using enzymes or microorganisms to separate optical isomers from a racemic mixture
  • C12N 9/02 - Oxidoreductases (1.), e.g. luciferase
  • C12N 9/04 - Oxidoreductases (1.), e.g. luciferase acting on CHOH groups as donors, e.g. glucose oxidase, lactate dehydrogenase (1.1)
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli

76.

ENGINEERED PHOSPHOPENTOMUTASE VARIANT ENZYMES

      
Application Number 18467259
Status Pending
Filing Date 2023-09-14
First Publication Date 2024-02-22
Owner Codexis, Inc. (USA)
Inventor
  • Novick, Scott J.
  • Yi, Xiang
  • Dellas, Nikki
  • Alvizo, Oscar
  • Nazor, Jovana
  • Duan, Da
  • Mitchell, Vesna
  • Vroom, Jonathan
  • Sivaramakrishnan, Santhosh
  • Subramanian, Nandhitha
  • Moore, Jeffrey C.
  • Huffman, Mark
  • Rodriguez-Granillo, Agustina
  • Verma, Deeptak
  • Murphy, Grant S.
  • Marshall, Nicholas
  • Russell, Jay
  • Canada, Keith A.

Abstract

The present invention provides engineered phosphopentomutase (PPM) enzymes, polypeptides having PPM activity, and polynucleotides encoding these enzymes, as well as vectors and host cells comprising these polynucleotides and polypeptides. Methods for producing PPM enzymes are also provided. The present invention further provides compositions comprising the PPM enzymes and methods of using the engineered PPM enzymes. The present invention finds particular use in the production of pharmaceutical compounds.

IPC Classes  ?

  • C12N 9/90 - Isomerases (5.)
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 15/74 - Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora
  • C12N 15/81 - Vectors or expression systems specially adapted for eukaryotic hosts for fungi for yeasts

77.

ENGINEERED BETA- GALACTOSIDASE POLYPEPTIDES

      
Application Number US2023072531
Publication Number 2024/040258
Status In Force
Filing Date 2023-08-19
Publication Date 2024-02-22
Owner CODEXIS, INC. (USA)
Inventor
  • Akeefe, Hassibullah
  • Artz, Jacob, Hansen
  • Chen, Joseph
  • Desautel, Sarah
  • Hallows, William, Casey
  • Kruse, Nikki, D.
  • Onguka, Ouma
  • Reddy, Charu, Shukla
  • Rivera-Velazquez, Mirella
  • Schmitt, Christopher, Edward
  • Silverman, Adam, P.
  • Wong, Victoria

Abstract

GM1 gangliosidosis, also referred to as beta-galactosidase- 1 deficiency, is a lysosomal storage disorder (LSD) arising from defects in beta-galactosidase activity. The enzyme is normally localized to lysosomes where the enzyme breaks down several different molecules, including GM1 -ganglioside. The present disclosure provides engineered beta-galactosidase polypeptides, recombinant polynucleotides encoding the engineered beta-galactosidases, and methods of using the engineered beta-galactosidases and recombinant polynucleotides for treating conditions or diseases associated with a deficiency in beta-galactosidase.

IPC Classes  ?

  • C12N 9/24 - Hydrolases (3.) acting on glycosyl compounds (3.2)
  • A61K 38/47 - Hydrolases (3) acting on glycosyl compounds (3.2), e.g. cellulases, lactases
  • A61K 48/00 - Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseasesGene therapy

78.

RECOMBINANT NEPROSIN POLYPEPTIDES AND METHODS OF EXPRESSION

      
Application Number 18315466
Status Pending
Filing Date 2023-05-10
First Publication Date 2024-01-25
Owner CODEXIS, INC. (USA)
Inventor
  • Celis Luna, Arianna I.
  • Duan, Da
  • Jordan, Paul Campion
  • Molnar, Kathleen Susan
  • Silverman, Adam P.
  • Windgassen, Tricia

Abstract

The present disclosure relates to methods of expressing recombinant neprosin polypeptide, host cells and expression vectors for expressing the recombinant neprosin polypeptide, and methods of using the expressed neprosin polypeptide for therapeutic and other purposes.

IPC Classes  ?

  • C12N 9/50 - Proteinases
  • A61P 1/14 - Prodigestives, e.g. acids, enzymes, appetite stimulants, antidyspeptics, tonics, antiflatulents

79.

NOVEL P450-BM3 VARIANTS WITH IMPROVED ACTIVITY

      
Application Number 18476753
Status Pending
Filing Date 2023-09-28
First Publication Date 2024-01-25
Owner Codexis, Inc. (USA)
Inventor
  • Osborne, Robert
  • Mitchell, Vesna
  • Htwe, Khin Yu Naing
  • Zhang, Xiyun
  • Milczek, Erika M.
  • Moore, Jeffrey C.

Abstract

The present invention provides improved P450-BM3 variants with improved activity. In some embodiments, the P450-BM3 variants exhibit improved activity over a wide range of substrates.

IPC Classes  ?

80.

ENGINEERED BIOCATALYSTS AND METHODS FOR SYNTHESIZING CHIRAL AMINES

      
Application Number 18024942
Status Pending
Filing Date 2021-09-17
First Publication Date 2024-01-25
Owner Codexis, Inc. (USA)
Inventor
  • Sivaramakrishnan, Santhosh
  • Bermudez, Ericka
  • Subramanian, Nandhitha
  • Entwistle, David
  • Forget, Stephanie Marie

Abstract

The present disclosure provides engineered transaminase polypeptides for the production of amines, polynucleotides encoding the engineered transaminases, host cells capable of expressing the engineered transaminases, and methods of using the engineered transaminases to prepare compounds useful in the production of active pharmaceutical agents.

IPC Classes  ?

  • C12P 17/18 - Preparation of heterocyclic carbon compounds with only O, N, S, Se, or Te as ring hetero atoms containing at least two hetero rings condensed among themselves or condensed with a common carbocyclic ring system, e.g. rifamycin
  • C12N 9/10 - Transferases (2.)

81.

Engineered amylase variants

      
Application Number 18462237
Grant Number 12071642
Status In Force
Filing Date 2023-09-06
First Publication Date 2024-01-25
Grant Date 2024-08-27
Owner
  • Codexis, Inc. (USA)
  • Société des Produits Nestlé S.A. (Switzerland)
Inventor
  • Chng, Chinping
  • Dellas, Nikki
  • Duan, Da
  • Garcia, Ravi David
  • Maniar, Harvinder Chagger

Abstract

The present invention provides engineered amylase polypeptides and compositions thereof. The engineered amylase polypeptides have been optimized to provide improved thermostability, protease stability, and stability under a range of pH conditions, including acidic (pH<7) conditions. The invention also relates to the use of the compositions comprising the engineered amylase polypeptides for therapeutic and/or nutritional purposes. The present invention also provides polynucleotides encoding the engineered amylase polypeptides, as well as methods for making the engineered polynucleotides and amylase polypeptides.

IPC Classes  ?

  • C12N 9/26 - Hydrolases (3.) acting on glycosyl compounds (3.2) acting on alpha-1, 4-glucosidic bonds, e.g. hyaluronidase, invertase, amylase
  • A61K 38/47 - Hydrolases (3) acting on glycosyl compounds (3.2), e.g. cellulases, lactases
  • A61P 1/18 - Drugs for disorders of the alimentary tract or the digestive system for pancreatic disorders, e.g. pancreatic enzymes
  • C12N 15/09 - Recombinant DNA-technology
  • C12N 15/10 - Processes for the isolation, preparation or purification of DNA or RNA
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • C12N 15/74 - Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora

82.

Biocatalysts for the preparation of hydroxy substituted carbamates

      
Application Number 18333393
Grant Number 12241093
Status In Force
Filing Date 2023-06-12
First Publication Date 2024-01-18
Grant Date 2025-03-04
Owner Codexis, Inc. (USA)
Inventor
  • Cabirol, Fabien Louis
  • Chen, Haibin
  • Gohel, Anupam
  • Collier, Steven J.
  • Smith, Derek J.
  • Kosjek, Birgit
  • Janey, Jacob

Abstract

The present disclosure relates to engineered ketoreductase polypeptides for the preparation of hydroxyl substituted carbamate compounds, and polynucleotides, vectors, host cells, and methods of making and using the ketoreductase polypeptides.

IPC Classes  ?

  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes
  • C12N 9/04 - Oxidoreductases (1.), e.g. luciferase acting on CHOH groups as donors, e.g. glucose oxidase, lactate dehydrogenase (1.1)
  • C12P 13/00 - Preparation of nitrogen-containing organic compounds
  • C12P 13/02 - Amides, e.g. chloramphenicol
  • C12P 41/00 - Processes using enzymes or microorganisms to separate optical isomers from a racemic mixture
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli

83.

Engineered transaminase polypeptides

      
Application Number 18459797
Grant Number 12331325
Status In Force
Filing Date 2023-09-01
First Publication Date 2024-01-04
Grant Date 2025-06-17
Owner Codexis, Inc. (USA)
Inventor
  • Novick, Scott J.
  • Dellas, Nikki

Abstract

The present disclosure provides engineered transaminase polypeptides useful for the synthesis of chiral amine compounds under industrially relevant conditions. The disclosure also provides polynucleotides encoding the engineered transaminase polypeptides, host cells capable of expressing the engineered transaminases, and methods of using the engineered transaminases for the production of chiral amine compounds.

IPC Classes  ?

84.

ENGINEERED PANTOTHENATE KINASE VARIANT ENZYMES

      
Application Number 18247054
Status Pending
Filing Date 2021-09-29
First Publication Date 2024-01-04
Owner Codexis, Inc. (USA)
Inventor
  • Nazor, Jovana
  • Krawczyk, Mikayla Jianghongxia
  • Seibel, Zara Maxine
  • Subramanian, Nandhitha
  • Kolev, Joshua

Abstract

The present invention provides engineered pantothenate kinase (PanK) enzymes, polypeptides having PanK activity, and polynucleotides encoding these enzymes, as well as vectors and host cells comprising these polynucleotides and polypeptides. Methods for producing PanK enzymes are also provided. The present invention further provides compositions comprising the PanK enzymes and methods of using the engineered PanK enzymes. The present invention finds particular use in the production of pharmaceutical compounds.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 15/63 - Introduction of foreign genetic material using vectorsVectorsUse of hosts thereforRegulation of expression

85.

ENGINEERED NITROALDOLASES

      
Application Number US2023067997
Publication Number 2023/240083
Status In Force
Filing Date 2023-06-06
Publication Date 2023-12-14
Owner CODEXIS, INC. (USA)
Inventor
  • Alvizo, Oscar
  • Novick, Scott, J.
  • Subramanian, Nandhitha
  • Schlama, Thierry

Abstract

The present invention provides engineered nitroaldolase polypeptides useful for the production of the β-nitro alcohols, as well as polynucleotides, compositions, and methods utilizing these engineered polypeptides.

IPC Classes  ?

  • C12N 9/88 - Lyases (4.)
  • C12P 7/42 - Hydroxy carboxylic acids
  • C12P 13/00 - Preparation of nitrogen-containing organic compounds
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli

86.

ENGINEERED NITROALDOLASES

      
Document Number 03258737
Status Pending
Filing Date 2023-06-06
Open to Public Date 2023-12-14
Owner CODEXIS, INC. (USA)
Inventor
  • Alvizo, Oscar
  • Novick, Scott J.
  • Subramanian, Nandhitha
  • Schlama, Thierry

IPC Classes  ?

87.

ENGINEERED GALACTOSE OXIDASE VARIANT ENZYMES

      
Application Number 18247863
Status Pending
Filing Date 2021-10-01
First Publication Date 2023-11-23
Owner Codexis, Inc. (USA)
Inventor
  • Borra-Garske, Margie Tabuga
  • Nazor, Jovana
  • Subramanian, Nandhitha
  • Alvizo, Oscar
  • Fryszkowska, Anna

Abstract

The present invention provides engineered galactose oxidase (GOase) enzymes, polypeptides having GOase activity, and polynucleotides encoding these enzymes, as well as vectors and host cells comprising these polynucleotides and polypeptides. Methods for producing GOase enzymes are also provided. The present invention further provides compositions comprising the GOase enzymes and methods of using the engineered GOase enzymes. The present invention finds particular use in the production of pharmaceutical and other compounds.

IPC Classes  ?

  • C12N 9/04 - Oxidoreductases (1.), e.g. luciferase acting on CHOH groups as donors, e.g. glucose oxidase, lactate dehydrogenase (1.1)
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli

88.

ENGINEERED PHOSPHOPENTOMUTASE VARIANT ENZYMES

      
Application Number 18247866
Status Pending
Filing Date 2021-10-05
First Publication Date 2023-11-23
Owner Codexis, Inc. (USA)
Inventor
  • Vroom, Jonathan
  • Sivaramakrishnan, Santhosh
  • Hurtak, Jessica Anna

Abstract

The present invention provides engineered phosphopentomutase (PPM) enzymes, polypeptides having PPM activity, and polynucleotides encoding these enzymes, as well as vectors and host cells comprising these polynucleotides and polypeptides. Methods for producing PPM enzymes are also provided. The present invention further provides compositions comprising the PPM enzymes and methods of using the engineered PPM enzymes. The present invention finds particular use in the production of pharmaceutical compounds.

IPC Classes  ?

89.

RECOMBINANT NEPROSIN POLYPEPTIDES AND METHODS OF EXPRESSION

      
Document Number 03257140
Status Pending
Filing Date 2023-05-10
Open to Public Date 2023-11-16
Owner CODEXIS, INC. (USA)
Inventor
  • Celis Luna, Arianna I.
  • Duan, Da
  • Jordan, Paul Campion
  • Molnar, Kathleen Susan
  • Silverman, Adam P.
  • Windgassen, Tricia

IPC Classes  ?

  • A61K 38/48 - Hydrolases (3) acting on peptide bonds (3.4)
  • C12N 9/50 - Proteinases
  • C12N 15/79 - Vectors or expression systems specially adapted for eukaryotic hosts

90.

RECOMBINANT NEPROSIN POLYPEPTIDES AND METHODS OF EXPRESSION

      
Application Number US2023066853
Publication Number 2023/220658
Status In Force
Filing Date 2023-05-10
Publication Date 2023-11-16
Owner CODEXIS, INC. (USA)
Inventor
  • Celis Luna, Arianna, I.
  • Duan, Da
  • Jordan, Paul, Campion
  • Molnar, Kathleen, Susan
  • Silverman, Adam, P.
  • Windgassen, Tricia

Abstract

The present disclosure relates to methods of expressing recombinant neprosin polypeptide, host cells and expression vectors for expressing the recombinant neprosin polypeptide, and methods of using the expressed neprosin polypeptide for therapeutic and other purposes.

IPC Classes  ?

  • A61K 38/48 - Hydrolases (3) acting on peptide bonds (3.4)
  • C12N 9/50 - Proteinases
  • C12N 15/79 - Vectors or expression systems specially adapted for eukaryotic hosts
  • A61P 3/00 - Drugs for disorders of the metabolism

91.

RECOMBINANT FACTOR VIII VARIANTS

      
Application Number 18150761
Status Pending
Filing Date 2023-01-05
First Publication Date 2023-10-26
Owner Codexis, Inc. (USA)
Inventor
  • Heredia, Jeremiah Dallas
  • Kruse, Nikki D.
  • Petkova, Aksiniya Lyubenova
  • Rohovie, Marcus
  • Silverman, Adam P.

Abstract

The present disclosure provides recombinant factor VIII polypeptides, polynucleotides encoding the recombinant factor VIII polypeptides, and compositions thereof, wherein the recombinant factor VIII polypeptides have been engineered to provide improved expression, activity/potency, clotting activity/potency, serum/plasma stability, and/or reduced immunogenicity. The present disclosure also relates to the use of the compositions comprising the recombinant factor VIII polypeptides or polynucleotides encoding the recombinant factor VIII polypeptides for therapeutic purposes.

IPC Classes  ?

  • C07K 14/755 - Factors VIII
  • C12N 15/63 - Introduction of foreign genetic material using vectorsVectorsUse of hosts thereforRegulation of expression
  • A61P 7/04 - AntihaemorrhagicsProcoagulantsHaemostatic agentsAntifibrinolytic agents

92.

Engineered biocatalysts and methods for synthesizing chiral amines

      
Application Number 18344690
Grant Number 12305201
Status In Force
Filing Date 2023-06-29
First Publication Date 2023-10-19
Grant Date 2025-05-20
Owner Codexis, Inc. (USA)
Inventor
  • Tang, Weng Lin
  • Hsieh, Helen
  • Pham, Son
  • Smith, Derek
  • Collier, Steven J.

Abstract

The present disclosure provides engineered transaminase polypeptides for the production of amines, polynucleotides encoding the engineered transaminases, host cells capable of expressing the engineered transaminases, and methods of using the engineered transaminases to prepare compounds useful in the production of active pharmaceutical agents.

IPC Classes  ?

  • C12N 9/10 - Transferases (2.)
  • C12P 13/00 - Preparation of nitrogen-containing organic compounds
  • C12P 15/00 - Preparation of compounds containing at least three condensed carbocyclic rings
  • C12P 17/12 - Nitrogen as only ring hetero atom containing a six-membered hetero ring
  • C12P 17/18 - Preparation of heterocyclic carbon compounds with only O, N, S, Se, or Te as ring hetero atoms containing at least two hetero rings condensed among themselves or condensed with a common carbocyclic ring system, e.g. rifamycin
  • C12P 33/00 - Preparation of steroids

93.

Biocatalysts and methods for the synthesis of substituted lactams

      
Application Number 18164522
Grant Number 12163162
Status In Force
Filing Date 2023-02-03
First Publication Date 2023-10-05
Grant Date 2024-12-10
Owner Codexis, Inc. (USA)
Inventor
  • Cabirol, Fabien Louis
  • Chen, Haibin
  • Gohel, Anupam
  • Salim, Paulina Elena
  • Smith, Derek J.
  • Janey, Jacob
  • Kosjek, Birgit
  • Tang, Weng Lin
  • Hsieh, Helen
  • Pham, Son Q.

Abstract

The present disclosure relates to transaminase polypeptides capable of aminating a dicarbonyl substrate, and polynucleotides, vectors, host cells, and methods of making and using the transaminase polypeptides.

IPC Classes  ?

  • C12N 9/10 - Transferases (2.)
  • C07D 211/76 - Oxygen atoms attached in position 2 or 6
  • C12N 1/21 - BacteriaCulture media therefor modified by introduction of foreign genetic material
  • C12P 13/00 - Preparation of nitrogen-containing organic compounds
  • C12P 17/12 - Nitrogen as only ring hetero atom containing a six-membered hetero ring

94.

ECO SYNTHESIS

      
Serial Number 98198117
Status Pending
Filing Date 2023-09-26
Owner Codexis, Inc. ()
NICE Classes  ?
  • 01 - Chemical and biological materials for industrial, scientific and agricultural use
  • 45 - Legal and security services; personal services for individuals.

Goods & Services

Reagents and enzymes for use in the manufacture of enzymatic catalyzed oligonucleotides for scientific and research use Licensing of technology for the manufacture and enzymatic synthesis of oligonucleotides

95.

ECORNA

      
Serial Number 98198083
Status Registered
Filing Date 2023-09-26
Registration Date 2025-03-11
Owner Codexis, Inc. ()
NICE Classes  ? 01 - Chemical and biological materials for industrial, scientific and agricultural use

Goods & Services

Reagents and enzymes for use in the manufacture of enzymatic catalyzed oligonucleotides for scientific and research use

96.

ENGINEERED IMINE REDUCTASES AND METHODS FOR THE REDUCTIVE AMINATION OF KETONE AND AMINE COMPOUNDS

      
Application Number 18171272
Status Pending
Filing Date 2023-02-17
First Publication Date 2023-09-21
Owner CODEXIS, INC. (USA)
Inventor
  • Chen, Haibin
  • Collier, Steven J.
  • Nazor, Jovana
  • Sukumaran, Joly
  • Smith, Derek
  • Moore, Jeffrey C.
  • Hughes, Gregory
  • Janey, Jacob
  • Huisman, Gjalt W.
  • Novick, Scott J.
  • Agard, Nicholas J.
  • Alvizo, Oscar
  • Cope, Gregory A.
  • Yeo, Wan Lin
  • Minor, Stefanie Ng

Abstract

The present disclosure provides engineered polypeptides having imine reductase activity, polynucleotides encoding the engineered imine reductases, host cells capable of expressing the engineered imine reductases, and methods of using these engineered polypeptides with a range of ketone and amine substrate compounds to prepare secondary and tertiary amine product compounds.

IPC Classes  ?

  • C12P 13/02 - Amides, e.g. chloramphenicol
  • C12P 13/00 - Preparation of nitrogen-containing organic compounds
  • C12P 17/18 - Preparation of heterocyclic carbon compounds with only O, N, S, Se, or Te as ring hetero atoms containing at least two hetero rings condensed among themselves or condensed with a common carbocyclic ring system, e.g. rifamycin
  • C12P 13/04 - Alpha- or beta-amino acids
  • C12P 13/06 - AlanineLeucineIsoleucineSerineHomoserine
  • C12P 17/10 - Nitrogen as only ring hetero atom
  • C12P 17/12 - Nitrogen as only ring hetero atom containing a six-membered hetero ring
  • C12P 17/16 - Preparation of heterocyclic carbon compounds with only O, N, S, Se, or Te as ring hetero atoms containing two or more hetero rings
  • C12N 9/06 - Oxidoreductases (1.), e.g. luciferase acting on nitrogen containing compounds as donors (1.4, 1.5, 1.7)

97.

KETOREDUCTASE POLYPEPTIDES AND POLYNUCLEOTIDES

      
Application Number 17761126
Status Pending
Filing Date 2020-09-24
First Publication Date 2023-09-14
Owner Codexis, Inc. (USA)
Inventor
  • Liang, Jack
  • Subramanian, Nandhitha
  • Ching, Charlene
  • Homan, David William
  • Whalen, Katie
  • Jones, Matthew Blake

Abstract

The present invention provides engineered ketoreductase enzymes having improved properties as compared to a naturally occurring wild-type ketoreductase enzyme, as well as polynucleotides encoding the engineered ketoreductase enzymes, host cells capable of expressing the engineered ketoreductase enzymes, and methods of using the engineered ketoreductase enzymes to synthesize a chiral alcohol. The present invention further provides methods of using the engineered enzymes.

IPC Classes  ?

  • C12N 9/04 - Oxidoreductases (1.), e.g. luciferase acting on CHOH groups as donors, e.g. glucose oxidase, lactate dehydrogenase (1.1)

98.

ENGINEERED MONOAMINE OXIDASES FOR THE PREPARATION OF STEREOMERICALLY PURE FUSED BICYCLIC PROLINE COMPOUNDS

      
Document Number 03245185
Status Pending
Filing Date 2023-03-10
Open to Public Date 2023-09-14
Owner CODEXIS, INC. (USA)
Inventor
  • Hurtak, Jessica Anna
  • Vroom, Jonathan
  • Watts, David

Abstract

The present invention provides novel biocatalysts and associated methods of use for the oxidative desymmetrization of fused bicyclic proline analogues to produce APIs and intermediates. The novel biocatalysts of the present disclosure are engineered monoamine oxidase enzymes with improved solubility, thermostability, and activity on fused bicyclic proline compounds, as compared to a reference monoamine oxidase. In particular, the engineered monoamine oxidase enzymes of the present disclosure require reduced enzyme loading for the manufacturing of APIs and intermediates, as compared to a reference monoamine oxidase enzyme.

IPC Classes  ?

  • A23K 20/189 - Enzymes
  • C07D 209/52 - Heterocyclic compounds containing five-membered rings, condensed with other rings, with one nitrogen atom as the only ring hetero atom condensed with one carbocyclic ring condensed with a ring other than six-membered
  • C07D 403/04 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group containing two hetero rings directly linked by a ring-member-to-ring- member bond
  • C07D 487/04 - Ortho-condensed systems
  • C12N 9/02 - Oxidoreductases (1.), e.g. luciferase

99.

ENGINEERED MONOAMINE OXIDASES FOR THE PREPARATION OF STEREOMERICALLY PURE FUSED BICYCLIC PROLINE COMPOUNDS

      
Application Number 18181760
Status Pending
Filing Date 2023-03-10
First Publication Date 2023-09-14
Owner CODEXIS, INC. (USA)
Inventor
  • Hurtak, Jessica Anna
  • Vroom, Jonathan
  • Watts, David

Abstract

The present invention provides novel biocatalysts and associated methods of use for the oxidative desymmetrization of fused bicyclic proline analogues to produce APIs and intermediates. The novel biocatalysts of the present disclosure are engineered monoamine oxidase enzymes with improved solubility, thermostability, and activity on fused bicyclic proline compounds, as compared to a reference monoamine oxidase. In particular, the engineered monoamine oxidase enzymes of the present disclosure require reduced enzyme loading for the manufacturing of APIs and intermediates, as compared to a reference monoamine oxidase enzyme.

IPC Classes  ?

  • C12N 9/06 - Oxidoreductases (1.), e.g. luciferase acting on nitrogen containing compounds as donors (1.4, 1.5, 1.7)
  • C12P 17/18 - Preparation of heterocyclic carbon compounds with only O, N, S, Se, or Te as ring hetero atoms containing at least two hetero rings condensed among themselves or condensed with a common carbocyclic ring system, e.g. rifamycin

100.

ENGINEERED MONOAMINE OXIDASES FOR THE PREPARATION OF STEREOMERICALLY PURE FUSED BICYCLIC PROLINE COMPOUNDS

      
Application Number US2023064092
Publication Number 2023/173058
Status In Force
Filing Date 2023-03-10
Publication Date 2023-09-14
Owner CODEXIS, INC. (USA)
Inventor
  • Hurtak, Jessica, Anna
  • Vroom, Jonathan
  • Watts, David

Abstract

The present invention provides novel biocatalysts and associated methods of use for the oxidative desymmetrization of fused bicyclic proline analogues to produce APIs and intermediates. The novel biocatalysts of the present disclosure are engineered monoamine oxidase enzymes with improved solubility, thermostability, and activity on fused bicyclic proline compounds, as compared to a reference monoamine oxidase. In particular, the engineered monoamine oxidase enzymes of the present disclosure require reduced enzyme loading for the manufacturing of APIs and intermediates, as compared to a reference monoamine oxidase enzyme.

IPC Classes  ?

  • C12N 9/02 - Oxidoreductases (1.), e.g. luciferase
  • C07D 209/52 - Heterocyclic compounds containing five-membered rings, condensed with other rings, with one nitrogen atom as the only ring hetero atom condensed with one carbocyclic ring condensed with a ring other than six-membered
  • C07D 403/04 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group containing two hetero rings directly linked by a ring-member-to-ring- member bond
  • C07D 487/04 - Ortho-condensed systems
  • A23K 20/189 - Enzymes
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