D.E. Shaw Research, LLC

United States of America

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IPC Class
C07D 487/04 - Ortho-condensed systems 28
A61P 35/00 - Antineoplastic agents 14
A61K 31/4985 - Pyrazines or piperazines ortho- or peri-condensed with heterocyclic ring systems 12
C07D 519/00 - Heterocyclic compounds containing more than one system of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring system not provided for in groups or 12
C07D 401/12 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings linked by a chain containing hetero atoms as chain links 11
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Registered / In Force 62
Found results for  patents

1.

BICYCLIC AND MONOCYCLIC TRPA1 INHIBITORS

      
Application Number US2024037153
Publication Number 2025/014922
Status In Force
Filing Date 2024-07-09
Publication Date 2025-01-16
Owner D. E. SHAW RESEARCH, LLC (USA)
Inventor
  • Giordanetto, Fabrizio
  • Jensen, Morten, Østergaard
  • Jogini, Vishwannath
  • Snow, Roger, John

Abstract

A compound of Formula I or II or a pharmaceutically acceptable salt thereof, is described, where the substituents are as defined herein. Pharmaceutical compositions comprising the same and method of using the same are also described.

IPC Classes  ?

  • C07D 471/02 - Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups in which the condensed system contains two hetero rings
  • A61K 31/4985 - Pyrazines or piperazines ortho- or peri-condensed with heterocyclic ring systems
  • A61P 25/00 - Drugs for disorders of the nervous system
  • A61P 37/00 - Drugs for immunological or allergic disorders

2.

SPIROINDOLINONE COMPOUNDS AS Kv1.3 POTASSIUM SHAKER CHANNEL BLOCKERS

      
Application Number 18564752
Status Pending
Filing Date 2022-05-27
First Publication Date 2024-11-28
Owner D.E. Shaw Research, LLC (USA)
Inventor
  • Giordanetto, Fabrizio
  • Jensen, Morten Østergaard
  • Jogini, Vishwanath
  • Snow, Roger John

Abstract

A compound of Formula (I) or a pharmaceutically-acceptable salt thereof, is described, wherein the substituents are as defined herein. Pharmaceutical compositions comprising the same and method of using the same are also described. A compound of Formula (I) or a pharmaceutically-acceptable salt thereof, is described, wherein the substituents are as defined herein. Pharmaceutical compositions comprising the same and method of using the same are also described.

IPC Classes  ?

  • C07D 487/10 - Spiro-condensed systems
  • A61K 31/407 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with one nitrogen as the only ring hetero atom, e.g. sulpiride, succinimide, tolmetin, buflomedil condensed with heterocyclic ring systems, e.g. ketorolac, physostigmine
  • A61K 31/4155 - 1,2-Diazoles not condensed and containing further heterocyclic rings
  • A61K 31/4245 - Oxadiazoles
  • A61K 31/497 - Non-condensed pyrazines containing further heterocyclic rings

3.

ARYL HETEROCYCLIC COMPOUNDS AS Kv1.3 POTASSIUM SHAKER CHANNEL BLOCKERS

      
Application Number 18553339
Status Pending
Filing Date 2022-03-29
First Publication Date 2024-11-07
Owner D.E. SHAW RESEARCH, LLC (USA)
Inventor
  • Giordanetto, Fabrizio
  • Jensen, Morten Østergaard
  • Jogini, Vishwanath
  • Snow, Roger John

Abstract

A compound of Formula I A compound of Formula I A compound of Formula I or a pharmaceutically-acceptable salt thereof, is described, wherein the substituents are as defined herein. Pharmaceutical compositions comprising the same and method of using the same are also described.

IPC Classes  ?

  • C07D 207/09 - Radicals substituted by nitrogen atoms not forming part of a nitro radical
  • A61K 31/40 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with one nitrogen as the only ring hetero atom, e.g. sulpiride, succinimide, tolmetin, buflomedil
  • A61K 31/4025 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with one nitrogen as the only ring hetero atom, e.g. sulpiride, succinimide, tolmetin, buflomedil not condensed and containing further heterocyclic rings, e.g. cromakalim
  • A61K 31/404 - Indoles, e.g. pindolol
  • A61K 31/4155 - 1,2-Diazoles not condensed and containing further heterocyclic rings
  • A61K 31/4178 - 1,3-Diazoles not condensed and containing further heterocyclic rings, e.g. pilocarpine, nitrofurantoin
  • A61K 31/4196 - 1,2,4-Triazoles
  • A61K 31/422 - Oxazoles not condensed and containing further heterocyclic rings
  • A61K 31/4245 - Oxadiazoles
  • A61K 31/427 - Thiazoles not condensed and containing further heterocyclic rings
  • A61K 31/4439 - Non-condensed pyridinesHydrogenated derivatives thereof containing further heterocyclic ring systems containing a five-membered ring with nitrogen as a ring hetero atom, e.g. omeprazole
  • A61K 31/444 - Non-condensed pyridinesHydrogenated derivatives thereof containing further heterocyclic ring systems containing a six-membered ring with nitrogen as a ring hetero atom, e.g. amrinone
  • A61K 31/454 - Non-condensed piperidines, e.g. piperocaine containing further heterocyclic ring systems containing a five-membered ring with nitrogen as a ring hetero atom, e.g. pimozide, domperidone
  • A61K 31/4725 - Non-condensed isoquinolines, e.g. papaverine containing further heterocyclic rings
  • A61K 31/506 - PyrimidinesHydrogenated pyrimidines, e.g. trimethoprim not condensed and containing further heterocyclic rings
  • A61K 31/53 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with three nitrogens as the only ring hetero atoms, e.g. chlorazanil, melamine
  • C07D 401/06 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings linked by a carbon chain containing only aliphatic carbon atoms
  • C07D 401/12 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings linked by a chain containing hetero atoms as chain links
  • C07D 401/14 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing three or more hetero rings
  • C07D 403/06 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group containing two hetero rings linked by a carbon chain containing only aliphatic carbon atoms
  • C07D 403/14 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group containing three or more hetero rings
  • C07D 405/04 - Heterocyclic compounds containing both one or more hetero rings having oxygen atoms as the only ring hetero atoms, and one or more rings having nitrogen as the only ring hetero atom containing two hetero rings directly linked by a ring-member-to-ring- member bond
  • C07D 405/14 - Heterocyclic compounds containing both one or more hetero rings having oxygen atoms as the only ring hetero atoms, and one or more rings having nitrogen as the only ring hetero atom containing three or more hetero rings
  • C07D 409/12 - Heterocyclic compounds containing two or more hetero rings, at least one ring having sulfur atoms as the only ring hetero atoms containing two hetero rings linked by a chain containing hetero atoms as chain links
  • C07D 413/06 - Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms containing two hetero rings linked by a carbon chain containing only aliphatic carbon atoms

4.

Joint Generation of a Molecular Graph and Three-Dimensional Geometry

      
Application Number 18693221
Status Pending
Filing Date 2022-09-28
First Publication Date 2024-09-05
Owner D.E. Shaw research, LLC (USA)
Inventor
  • Roney, James Peter
  • Maragkakis, Pavlos
  • Skopp, Peter

Abstract

A machine-learning approach jointly generates molecular graphs and corresponding three-dimensional geometries, for example, for searching a chemical space of potential molecules with desired chemical properties. In some examples, molecules are generated incrementally by repeatedly adding atoms to a molecular graph as well as determining geometric (e.g., location) information for the added atoms until a complete molecule is generated. This incremental process can be stochastic enabling random sampling from a chemical space.

IPC Classes  ?

  • G16C 20/50 - Molecular design, e.g. of drugs
  • G16C 20/70 - Machine learning, data mining or chemometrics

5.

PI3K-ALPHA INHIBITORS AND METHODS OF USE THEREOF

      
Application Number 17921580
Status Pending
Filing Date 2021-04-29
First Publication Date 2024-08-29
Owner
  • Relay Therapeutics, Inc. (USA)
  • D. E. Shaw Research, LLC (USA)
Inventor
  • Boezio, Alessandro
  • Dipietro, Lucian V.
  • Fridrich, Cary Griffin
  • Gunaydin, Hakan
  • Kurukulasuriya, Ravi
  • Lescarbeau, André
  • Mader, Mary M.
  • Mclean, Thomas H.
  • Pierce, Levi Charlesthomas
  • Raynor, Kevin David
  • Shortsleeves, Kelley C.
  • Tang, Yong
  • Taylor, Alexander M.
  • Walters, W. Patrick
  • Zhang, Hanmo
  • Giordanetto, Fabrizio
  • Pechersky, Yakov
  • Wang, Qi
  • Atienza, Bren-Jordan
  • Bertrand-Laperle, Megan
  • Burnie, Andrew J.
  • Chen, Fei
  • Chitale, Sampada
  • Gelozia, Shorena
  • Giguere, Jean-Benoit
  • Landagaray, Elodie
  • Larivee, Alexandre
  • Lepitre, Thomas
  • Maertens, Gaetan
  • Outin, Johanne
  • Pal, Mohan
  • Sturino, Claudio
  • Tanveer, Kashif
  • Thorat, Rakesh
  • Vemula, Naresh
  • Krueger, Elaine B.
  • Pan, Yue
  • Deninno, Michael Paul
  • Bousquet, Yves
  • Jobin-Des Lauriers, Antoine
  • Lee, Jessica
  • Mohamed, Tarek

Abstract

The present disclosure relates to novel compounds and pharmaceutical compositions thereof, and methods for inhibiting the activity of PI3K-α enzymes with the compounds and compositions of the disclosure. The present disclosure further relates to, but is not limited to, methods for treating disorders associated with PI3K-α signaling with the compounds and compositions of the disclosure.

IPC Classes  ?

  • C07D 471/04 - Ortho-condensed systems
  • A61K 31/4035 - Isoindoles, e.g. phthalimide
  • A61K 31/404 - Indoles, e.g. pindolol
  • A61K 31/4155 - 1,2-Diazoles not condensed and containing further heterocyclic rings
  • A61K 31/416 - 1,2-Diazoles condensed with carbocyclic ring systems, e.g. indazole
  • A61K 31/428 - Thiazoles condensed with carbocyclic rings
  • A61K 31/437 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with one nitrogen as the only ring hetero atom ortho- or peri-condensed with heterocyclic ring systems the heterocyclic ring system containing a five-membered ring having nitrogen as a ring hetero atom, e.g. indolizine, beta-carboline
  • A61K 31/4375 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with one nitrogen as the only ring hetero atom ortho- or peri-condensed with heterocyclic ring systems the heterocyclic ring system containing a six-membered ring having nitrogen as a ring hetero atom, e.g. quinolizines, naphthyridines, berberine, vincamine
  • A61K 31/4545 - Non-condensed piperidines, e.g. piperocaine containing further heterocyclic ring systems containing a six-membered ring with nitrogen as a ring hetero atom, e.g. pipamperone, anabasine
  • A61K 31/472 - Non-condensed isoquinolines, e.g. papaverine
  • A61K 31/506 - PyrimidinesHydrogenated pyrimidines, e.g. trimethoprim not condensed and containing further heterocyclic rings
  • A61K 31/517 - PyrimidinesHydrogenated pyrimidines, e.g. trimethoprim ortho- or peri-condensed with carbocyclic ring systems, e.g. quinazoline, perimidine
  • A61K 31/519 - PyrimidinesHydrogenated pyrimidines, e.g. trimethoprim ortho- or peri-condensed with heterocyclic rings
  • A61K 31/536 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with at least one nitrogen and at least one oxygen as the ring hetero atoms, e.g. 1,2-oxazines ortho- or peri-condensed with carbocyclic ring systems
  • A61K 31/69 - Boron compounds
  • C07D 209/46 - Iso-indolesHydrogenated iso-indoles with an oxygen atom in position 1
  • C07D 209/48 - Iso-indolesHydrogenated iso-indoles with oxygen atoms in positions 1 and 3, e.g. phthalimide
  • C07D 217/24 - Oxygen atoms
  • C07D 231/56 - BenzopyrazolesHydrogenated benzopyrazoles
  • C07D 239/82 - Oxygen atoms with an aryl radical attached in position 4
  • C07D 265/18 - 1,3-OxazinesHydrogenated 1,3-oxazines condensed with carbocyclic rings or ring systems condensed with one six-membered ring with hetero atoms directly attached in position 2
  • C07D 275/06 - Heterocyclic compounds containing 1, 2-thiazole or hydrogenated 1,2-thiazole rings condensed with carbocyclic rings or ring systems with hetero atoms directly attached to the ring sulfur atom
  • C07D 401/04 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings directly linked by a ring-member-to-ring- member bond
  • C07D 403/04 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group containing two hetero rings directly linked by a ring-member-to-ring- member bond
  • C07D 403/12 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group containing two hetero rings linked by a chain containing hetero atoms as chain links
  • C07D 405/06 - Heterocyclic compounds containing both one or more hetero rings having oxygen atoms as the only ring hetero atoms, and one or more rings having nitrogen as the only ring hetero atom containing two hetero rings linked by a carbon chain containing only aliphatic carbon atoms
  • C07D 409/12 - Heterocyclic compounds containing two or more hetero rings, at least one ring having sulfur atoms as the only ring hetero atoms containing two hetero rings linked by a chain containing hetero atoms as chain links
  • C07D 409/14 - Heterocyclic compounds containing two or more hetero rings, at least one ring having sulfur atoms as the only ring hetero atoms containing three or more hetero rings
  • C07D 417/12 - Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group containing two hetero rings linked by a chain containing hetero atoms as chain links
  • C07D 487/04 - Ortho-condensed systems
  • C07D 519/00 - Heterocyclic compounds containing more than one system of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring system not provided for in groups or
  • C07F 5/02 - Boron compounds

6.

BICYCLIC IMIDE COMPOUNDS AS TRPA1 INHIBITORS

      
Application Number US2024013327
Publication Number 2024/163333
Status In Force
Filing Date 2024-01-29
Publication Date 2024-08-08
Owner D. E. SHAW RESEARCH, LLC (USA)
Inventor
  • Giordanetto, Fabrizio
  • Jensen, Morten Østergaard
  • Jogini, Vishwanath
  • Snow, Roger John

Abstract

A compound of Formula (I) or a pharmaceutically acceptable salt thereof, is described, wherein the substituents are as defined herein. Pharmaceutical compositions comprising the same and method of using the same are also described.

IPC Classes  ?

  • A61K 31/395 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
  • A61K 31/4162 - 1,2-Diazoles condensed with heterocyclic ring systems
  • A61K 31/42 - Oxazoles
  • A61K 31/33 - Heterocyclic compounds

7.

MULTIBODY SIMULATION

      
Application Number 18282818
Status Pending
Filing Date 2022-03-18
First Publication Date 2024-05-23
Owner D. E. SHAW RESEARCH, LLC (USA)
Inventor
  • Batson, Brannon
  • Greskamp, Brian Lee
  • Edwards, Bruce
  • Butts, Jeffrey Adam
  • Fenton, Christopher Howard
  • Grossman, Jeffrey Paul
  • Ierardi, Douglas John
  • Lerer, Adam
  • Towles, Brian Patrick
  • Bergdorf, Michael Edmund
  • Predescu, Cristian
  • Salmon, John K.
  • Taube, Andrew Garvin

Abstract

Improvements in a molecular-dynamic simulator provide ways to save energy during computation and reduce die area consumed on an integrated circuit. Examples of such improvements include different interaction modules for different ranges, the use of streaming along rows while multicasting along columns in an array of interaction modules, the selection of computation units based on balancing computational costs and communication costs, the use of fences in networks that connect computation units, and the use of bond calculators to carry out specialized bond calculations.

IPC Classes  ?

  • G06F 30/25 - Design optimisation, verification or simulation using particle-based methods

8.

LACTAM COMPOUNDS AS Kv1.3 POTASSIUM SHAKER CHANNEL BLOCKERS

      
Application Number 18247521
Status Pending
Filing Date 2021-10-04
First Publication Date 2023-11-23
Owner D.E. Shaw Research, LLC (USA)
Inventor
  • Giordanetto, Fabrizio
  • Jensen, Morten Østergaard
  • Jogini, Vishwanath
  • Snow, Roger John

Abstract

A compound of Formula (I), or a pharmaceutically acceptable salt thereof, is described, where the substituents are as defined herein. Pharmaceutical compositions including the same and method of using the same are also described. A compound of Formula (I), or a pharmaceutically acceptable salt thereof, is described, where the substituents are as defined herein. Pharmaceutical compositions including the same and method of using the same are also described.

IPC Classes  ?

  • C07D 401/04 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings directly linked by a ring-member-to-ring- member bond
  • C07D 403/04 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group containing two hetero rings directly linked by a ring-member-to-ring- member bond
  • C07D 405/04 - Heterocyclic compounds containing both one or more hetero rings having oxygen atoms as the only ring hetero atoms, and one or more rings having nitrogen as the only ring hetero atom containing two hetero rings directly linked by a ring-member-to-ring- member bond
  • C07D 207/27 - 2-Pyrrolidones with only hydrogen atoms or radicals containing only hydrogen and carbon atoms directly attached to other ring carbon atoms with substituted hydrocarbon radicals directly attached to the ring nitrogen atom
  • C07D 403/06 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group containing two hetero rings linked by a carbon chain containing only aliphatic carbon atoms
  • C07D 417/04 - Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group containing two hetero rings directly linked by a ring-member-to-ring- member bond
  • C07D 413/04 - Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms containing two hetero rings directly linked by a ring-member-to-ring- member bond
  • C07D 263/20 - Oxygen atoms attached in position 2
  • C07D 265/32 - 1,4-OxazinesHydrogenated 1,4-oxazines not condensed with other rings with oxygen atoms directly attached to ring carbon atoms
  • C07D 233/32 - One oxygen atom

9.

PYRIDONE COMPOUNDS AS TRPA1 INHIBITORS

      
Application Number US2023066533
Publication Number 2023/215775
Status In Force
Filing Date 2023-05-03
Publication Date 2023-11-09
Owner D. E. SHAW RESEARCH, LLC (USA)
Inventor
  • Giordanetto, Fabrizio
  • Jensen, Morten, Stergaard
  • Jogini, Vishwanath
  • Snow, Roger, John

Abstract

A compound of Formula (I) or a pharmaceutically acceptable salt thereof, is described, wherein the substituents are as defined herein. Pharmaceutical compositions comprising the same arid method of using the same for treatment of medical conditions, including pain, a skin disorder, a respiratory disease, a fibrotic disease, an inner ear disorder, fever or another disorder of thermoregulation, are also described.

IPC Classes  ?

  • C07D 271/06 - 1,2,4-OxadiazolesHydrogenated 1,2,4-oxadiazoles
  • A61K 31/4245 - Oxadiazoles
  • A61K 31/4412 - Non-condensed pyridinesHydrogenated derivatives thereof having oxo groups directly attached to the heterocyclic ring
  • A61K 31/443 - Non-condensed pyridinesHydrogenated derivatives thereof containing further heterocyclic ring systems containing a five-membered ring with oxygen as a ring hetero atom
  • A61K 31/4439 - Non-condensed pyridinesHydrogenated derivatives thereof containing further heterocyclic ring systems containing a five-membered ring with nitrogen as a ring hetero atom, e.g. omeprazole
  • A61K 31/506 - PyrimidinesHydrogenated pyrimidines, e.g. trimethoprim not condensed and containing further heterocyclic rings
  • A61K 31/513 - PyrimidinesHydrogenated pyrimidines, e.g. trimethoprim having oxo groups directly attached to the heterocyclic ring, e.g. cytosine

10.

Substituted isoindolines as PI3K-alpha inhibitors

      
Application Number 18208023
Grant Number 12219327
Status In Force
Filing Date 2023-06-09
First Publication Date 2023-11-02
Grant Date 2025-02-04
Owner
  • Relay Therapeutics, Inc. (USA)
  • D. E. Shaw Research, LLC (USA)
Inventor
  • Dipietro, Lucian V.
  • Shortsleeves, Kelley C.
  • Mclean, Thomas H.
  • Larivee, Alexandre
  • Giordanetto, Fabrizio
  • Lescarbeau, André
  • Boezio, Alessandro
  • Zhang, Hanmo

Abstract

The present disclosure relates to novel compounds and pharmaceutical compositions thereof, and methods for inhibiting the activity of PI3K-α enzymes with the compounds and compositions of the disclosure. The present disclosure further relates to, but is not limited to, methods for treating disorders associated with PI3K-α signaling with the compounds and compositions of the disclosure.

IPC Classes  ?

  • A61K 31/4035 - Isoindoles, e.g. phthalimide
  • A61B 5/00 - Measuring for diagnostic purposes Identification of persons
  • C07D 209/46 - Iso-indolesHydrogenated iso-indoles with an oxygen atom in position 1
  • C07D 487/04 - Ortho-condensed systems
  • H04R 25/00 - Deaf-aid sets

11.

N3-SUBSTITUTED URACIL COMPOUNDS AS TRPA1 INHIBITORS

      
Application Number US2023061812
Publication Number 2023/150592
Status In Force
Filing Date 2023-02-02
Publication Date 2023-08-10
Owner D.E. SHAW RESEARCH, LLC (USA)
Inventor
  • Giordanetto, Fabrizio
  • Jensen, Morten, Østergaard
  • Jogini, Vishwanath
  • Snow, Roger, John

Abstract

A compound of Formula (I) or a pharmaceutically acceptable salt thereof, is described, wherein the substituents are as defined herein. Pharmaceutical compositions comprising the same and method of using the same are also described.

IPC Classes  ?

  • A61K 31/395 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
  • A61K 31/33 - Heterocyclic compounds
  • A61K 31/34 - Heterocyclic compounds having oxygen as the only ring hetero atom, e.g. fungichromin having five-membered rings with one oxygen as the only ring hetero atom, e.g. isosorbide
  • A61K 31/435 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with one nitrogen as the only ring hetero atom

12.

PYRIDAZINONE COMPOUNDS AS TRPA1 INHIBITORS

      
Application Number US2023061810
Publication Number 2023/150591
Status In Force
Filing Date 2023-02-02
Publication Date 2023-08-10
Owner D.E. SHAW RESEARCH, LLC (USA)
Inventor
  • Giordanetto, Fabrizio
  • Jensen, Morten, Østergaard
  • Jogini, Vishwanath
  • Snow, Roger, John

Abstract

A compound of Formula (I) or a pharmaceutically acceptable salt thereof, is described, wherein the substituents are as defined herein. Pharmaceutical compositions comprising the same and method of using the same are also described.

IPC Classes  ?

  • A61K 31/33 - Heterocyclic compounds
  • A61K 31/395 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
  • A61K 31/50 - PyridazinesHydrogenated pyridazines
  • A61K 31/506 - PyrimidinesHydrogenated pyrimidines, e.g. trimethoprim not condensed and containing further heterocyclic rings

13.

SHP2 PHOSPHATASE INHIBITORS AND METHODS OF USE THEREOF

      
Application Number 18066551
Status Pending
Filing Date 2022-12-15
First Publication Date 2023-07-27
Owner
  • Relay Therapeutics, Inc. (USA)
  • D. E. Shaw Research, LLC. (USA)
Inventor
  • Taylor, Alexander M.
  • Lescarbbeau, Andre
  • Kelley, Elizabeth H.
  • Shortsleeves, Kelley C.
  • Walters, W. Patrick
  • Murcko, Mark Andrew
  • Mclean, Thomas H.
  • Gunaydin, Hakan
  • Giordanetto, Fabrizio
  • Therrien, Eric

Abstract

The present disclosure relates to novel compounds including formula (X) and pharmaceutical compositions thereof, and methods for inhibiting the activity of SHP2 phosphatase with the compounds and compositions of the disclosure. The present disclosure further relates to, but is not limited to, methods for treating disorders associated with SHP2 deregulation with the compounds and compositions of the disclosure. The present disclosure relates to novel compounds including formula (X) and pharmaceutical compositions thereof, and methods for inhibiting the activity of SHP2 phosphatase with the compounds and compositions of the disclosure. The present disclosure further relates to, but is not limited to, methods for treating disorders associated with SHP2 deregulation with the compounds and compositions of the disclosure.

IPC Classes  ?

  • C07D 487/04 - Ortho-condensed systems
  • C07D 401/04 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings directly linked by a ring-member-to-ring- member bond
  • C07D 401/14 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing three or more hetero rings
  • C07D 519/00 - Heterocyclic compounds containing more than one system of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring system not provided for in groups or
  • C07D 221/20 - Spiro-condensed ring systems
  • C07D 401/12 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings linked by a chain containing hetero atoms as chain links
  • C07D 417/04 - Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group containing two hetero rings directly linked by a ring-member-to-ring- member bond
  • C07D 417/14 - Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group containing three or more hetero rings
  • C07D 491/107 - Spiro-condensed systems with only one oxygen atom as ring hetero atom in the oxygen-containing ring
  • C07D 513/04 - Ortho-condensed systems

14.

ARYLMETHYLENE AROMATIC COMPOUNDS AS Kv1.3 POTASSIUM SHAKER CHANNEL BLOCKERS

      
Application Number 17766879
Status Pending
Filing Date 2020-10-06
First Publication Date 2023-04-27
Owner D. E. Shaw Research, LLC (USA)
Inventor
  • Giordanetto, Fabrizio
  • Jensen, Morten Østergaard
  • Jogini, Vishwanath
  • Snow, Roger John

Abstract

A compound of Formula (I), or a pharmaceutically acceptable salt thereof, is described, wherein the substituents are as defined herein. Pharmaceutical compositions comprising the same and method of using the same are also described. A compound of Formula (I), or a pharmaceutically acceptable salt thereof, is described, wherein the substituents are as defined herein. Pharmaceutical compositions comprising the same and method of using the same are also described.

IPC Classes  ?

  • C07D 213/30 - Oxygen atoms
  • C07D 213/73 - Unsubstituted amino or imino radicals
  • C07C 215/50 - Compounds containing amino and hydroxy groups bound to the same carbon skeleton having hydroxy groups bound to carbon atoms of at least one six-membered aromatic ring and amino groups bound to acyclic carbon atoms or to carbon atoms of rings other than six-membered aromatic rings of the same carbon skeleton with amino groups linked to the six-membered aromatic ring, or to the condensed ring system containing that ring, by carbon chains not further substituted by hydroxy groups with amino groups and the six-membered aromatic ring, or the condensed ring system containing that ring, bound to the same carbon atom of the carbon chain
  • C07D 213/82 - AmidesImides in position 3
  • C07D 213/38 - Radicals substituted by singly-bound nitrogen atoms having only hydrogen or hydrocarbon radicals attached to the substituent nitrogen atom
  • C07D 231/12 - Heterocyclic compounds containing 1,2-diazole or hydrogenated 1,2-diazole rings not condensed with other rings having two or three double bonds between ring members or between ring members and non-ring members with only hydrogen atoms, hydrocarbon or substituted hydrocarbon radicals, directly attached to ring carbon atoms
  • C07D 401/12 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings linked by a chain containing hetero atoms as chain links
  • C07C 237/30 - Carboxylic acid amides, the carbon skeleton of the acid part being further substituted by amino groups having the carbon atom of at least one of the carboxamide groups bound to a carbon atom of a non-condensed six-membered aromatic ring of the carbon skeleton having the nitrogen atom of the carboxamide group bound to hydrogen atoms or to acyclic carbon atoms
  • C07D 213/64 - One oxygen atom attached in position 2 or 6
  • C07D 213/40 - Acylated substituent nitrogen atom
  • C07D 209/44 - Iso-indolesHydrogenated iso-indoles
  • C07D 213/81 - AmidesImides
  • C07D 213/84 - Nitriles
  • C07D 213/56 - Amides
  • C07D 209/08 - IndolesHydrogenated indoles with only hydrogen atoms or radicals containing only hydrogen and carbon atoms, directly attached to carbon atoms of the hetero ring
  • C07D 241/12 - Heterocyclic compounds containing 1,4-diazine or hydrogenated 1,4-diazine rings not condensed with other rings having three double bonds between ring members or between ring members and non-ring members with only hydrogen atoms, hydrocarbon or substituted hydrocarbon radicals, directly attached to ring carbon atoms
  • C07D 213/50 - Ketonic radicals
  • C07D 205/04 - Heterocyclic compounds containing four-membered rings with one nitrogen atom as the only ring hetero atom not condensed with other rings having no double bonds between ring members or between ring members and non-ring members
  • C07D 211/60 - Carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals
  • C07C 235/08 - Carboxylic acid amides, the carbon skeleton of the acid part being further substituted by oxygen atoms having carbon atoms of carboxamide groups bound to acyclic carbon atoms and singly-bound oxygen atoms bound to the same carbon skeleton the carbon skeleton being acyclic and saturated having the nitrogen atom of at least one of the carboxamide groups bound to an acyclic carbon atom of a hydrocarbon radical substituted by singly-bound oxygen atoms
  • C07D 211/62 - Carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals attached in position 4
  • C07D 265/30 - 1,4-OxazinesHydrogenated 1,4-oxazines not condensed with other rings
  • C07D 207/16 - Carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals

15.

FGFR INHIBITORS AND METHODS OF USE THEREOF

      
Application Number 17595257
Status Pending
Filing Date 2020-05-12
First Publication Date 2023-04-06
Owner
  • Relay Therapeutics, Inc. (USA)
  • D.E. Shaw Research, LLC (USA)
Inventor
  • Touré, Bakary-Barry
  • Schoenherr, Heike
  • Taylor, Alexander M.
  • Giordanetto, Fabrizio
  • Moustakas, Demetri T.
  • Mclean, Thomas H.
  • Hudson, Brandi M.
  • Mader, Mary M.
  • Ayaz, Pelin
  • Sharon, Dina A.
  • Kurukulasuriya, Ravi
  • Boezio, Alessandro

Abstract

The present disclosure relates to novel compounds and pharmaceutical compositions thereof, and methods for inhibiting the activity of FGFR enzymes with the compounds and compositions of the disclosure. The present disclosure further relates to, but is not limited to, methods for treating disorders associated with FGFR signaling with the compounds and compositions of the disclosure.

IPC Classes  ?

  • C07D 487/04 - Ortho-condensed systems
  • C07D 519/00 - Heterocyclic compounds containing more than one system of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring system not provided for in groups or
  • C07D 491/048 - Ortho-condensed systems with only one oxygen atom as ring hetero atom in the oxygen-containing ring the oxygen-containing ring being five-membered
  • C07D 498/22 - Heterocyclic compounds containing in the condensed system at least one hetero ring having nitrogen and oxygen atoms as the only ring hetero atoms in which the condensed system contains four or more hetero rings
  • C07D 498/02 - Heterocyclic compounds containing in the condensed system at least one hetero ring having nitrogen and oxygen atoms as the only ring hetero atoms in which the condensed system contains two hetero rings
  • C07D 487/22 - Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, not provided for by groups in which the condensed system contains four or more hetero rings

16.

JOINT GENERATION OF A MOLECULAR GRAPH AND THREE-DIMENSIONAL GEOMETRY

      
Application Number US2022045016
Publication Number 2023/055784
Status In Force
Filing Date 2022-09-28
Publication Date 2023-04-06
Owner D. E. SHAW RESEARCH, LLC (USA)
Inventor
  • Roney, James, Peter
  • Maragkakis, Pavlos
  • Skopp, Peter

Abstract

A machine-learning approach jointly generates molecular graphs and corresponding three-dimensional geometries, for example, for searching a chemical space of potential molecules with desired chemical properties. In some examples, molecules are generated incrementally by repeatedly adding atoms to a molecular graph as well as determining geometric (e.g., location) information for the added atoms until a complete molecule is generated. This incremental process can be stochastic enabling random sampling from a chemical space.

IPC Classes  ?

  • G16C 20/50 - Molecular design, e.g. of drugs
  • G16C 20/30 - Prediction of properties of chemical compounds, compositions or mixtures
  • G06N 3/02 - Neural networks
  • G06N 3/04 - Architecture, e.g. interconnection topology
  • G16C 20/80 - Data visualisation

17.

PI3K-ALPHA INHIBITORS AND METHODS OF USE THEREOF

      
Application Number US2022076213
Publication Number 2023/039532
Status In Force
Filing Date 2022-09-09
Publication Date 2023-03-16
Owner
  • RELAY THERAPEUTICS, INC. (USA)
  • D. E. SHAW RESEARCH, LLC (USA)
Inventor
  • Boezio, Alessandro
  • Taylor, Alexander M.
  • Gunaydin, Hakan
  • Zhang, Hanmo
  • Raynor, Kevin David
  • Shortsleeves, Kelley C.
  • Dipietro, Lucian V.
  • Pierce, Levi Charles Thomas
  • Pabon, Nicolas
  • Mclean, Thomas H.
  • Giordanetto, Fabrizio
  • Pechersky, Yakov
  • Wang, Qi
  • Larivee, Alexandre
  • Chen, Fei
  • Maertens, Gaetan
  • Outin, Johanne
  • Bertrand-Laperle, Megan
  • Pal, Mohan
  • Chitale, Sampada
  • Deninno, Michael Paul

Abstract

The present disclosure relates to novel compounds and pharmaceutical compositions thereof, and methods for inhibiting the activity of PI3Kα enzymes with the compounds and compositions of the disclosure. The present disclosure further relates to, but is not limited to, methods for treating disorders associated with PI3Kα signaling with the compounds and compositions of the disclosure.

IPC Classes  ?

  • C07C 15/42 - Cyclic hydrocarbons containing only six-membered aromatic rings as cyclic part substituted by unsaturated hydrocarbon radicals monocyclic
  • C07C 33/20 - Monohydroxylic alcohols containing only six-membered aromatic rings as cyclic part monocyclic
  • C07C 33/30 - Alcohols containing only six-membered aromatic rings as cyclic part with unsaturation outside the aromatic rings monocyclic
  • A61P 35/00 - Antineoplastic agents

18.

ARYL HETEROBICYCLIC COMPOUNDS AS Kv1.3 POTASSIUM SHAKER CHANNEL BLOCKERS

      
Application Number 17766834
Status Pending
Filing Date 2020-10-06
First Publication Date 2023-02-16
Owner D. E. Shaw Research, LLC (USA)
Inventor
  • Giordanetto, Fabrizio
  • Jensen, Morten Østergaard
  • Jogini, Vishwanath
  • Snow, Roger John

Abstract

A compound of Formula (I), or a pharmaceutically acceptable salt thereof, is described, where the substituents are as defined herein. Pharmaceutical compositions including the same and method of using the same are also described. A compound of Formula (I), or a pharmaceutically acceptable salt thereof, is described, where the substituents are as defined herein. Pharmaceutical compositions including the same and method of using the same are also described.

IPC Classes  ?

  • C07D 471/04 - Ortho-condensed systems
  • C07D 401/02 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings
  • C07D 405/02 - Heterocyclic compounds containing both one or more hetero rings having oxygen atoms as the only ring hetero atoms, and one or more rings having nitrogen as the only ring hetero atom containing two hetero rings
  • C07D 413/02 - Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms containing two hetero rings
  • C07D 487/04 - Ortho-condensed systems

19.

ARYL HETEROBICYCLIC COMPOUNDS AS Kv1.3 POTASSIUM SHAKER CHANNEL BLOCKERS

      
Application Number 17766837
Status Pending
Filing Date 2020-10-06
First Publication Date 2023-02-09
Owner D. E. Shaw Research, LLC (USA)
Inventor
  • Giordanetto, Fabrizio
  • Jensen, Morten Østergaard
  • Jogini, Vishwanath
  • Snow, Roger John

Abstract

A compound of Formula (I), or a pharmaceutically acceptable salt thereof, is described, where the substituents are as defined herein. Pharmaceutical compositions including the same and method of using the same are also described. A compound of Formula (I), or a pharmaceutically acceptable salt thereof, is described, where the substituents are as defined herein. Pharmaceutical compositions including the same and method of using the same are also described.

IPC Classes  ?

20.

ARYL HETEROCYCLIC COMPOUNDS AS Kv1.3 POTASSIUM SHAKER CHANNEL BLOCKERS

      
Application Number 17766832
Status Pending
Filing Date 2020-10-06
First Publication Date 2023-01-26
Owner D. E. Shaw Research, LLC (USA)
Inventor
  • Giordanetto, Fabrizio
  • Jensen, Morten Østergaard
  • Jogini, Vishwanath
  • Snow, Roger John

Abstract

A compound of Formula (I), or a pharmaceutically-acceptable salt thereof, is described, wherein the substituents are as defined herein. Pharmaceutical compositions comprising the same and method of using the same are also described. A compound of Formula (I), or a pharmaceutically-acceptable salt thereof, is described, wherein the substituents are as defined herein. Pharmaceutical compositions comprising the same and method of using the same are also described.

IPC Classes  ?

  • C07D 211/34 - Heterocyclic compounds containing hydrogenated pyridine rings, not condensed with other rings with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having no double bonds between ring members or between ring members and non-ring members with hydrocarbon or substituted hydrocarbon radicals directly attached to ring carbon atoms with substituted hydrocarbon radicals attached to ring carbon atoms with hydrocarbon radicals, substituted by carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals
  • C07D 211/22 - Heterocyclic compounds containing hydrogenated pyridine rings, not condensed with other rings with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having no double bonds between ring members or between ring members and non-ring members with hydrocarbon or substituted hydrocarbon radicals directly attached to ring carbon atoms with substituted hydrocarbon radicals attached to ring carbon atoms with hydrocarbon radicals, substituted by singly bound oxygen or sulfur atoms by oxygen atoms
  • C07D 295/096 - Heterocyclic compounds containing polymethylene-imine rings with at least five ring members, 3-azabicyclo [3.2.2] nonane, piperazine, morpholine or thiomorpholine rings, having only hydrogen atoms directly attached to the ring carbon atoms with substituted hydrocarbon radicals attached to ring nitrogen atoms substituted by singly bound oxygen or sulfur atoms with the ring nitrogen atoms and the oxygen or sulfur atoms separated by carbocyclic rings or by carbon chains interrupted by carbocyclic rings
  • C07D 211/56 - Nitrogen atoms
  • C07D 205/04 - Heterocyclic compounds containing four-membered rings with one nitrogen atom as the only ring hetero atom not condensed with other rings having no double bonds between ring members or between ring members and non-ring members
  • C07D 243/08 - Heterocyclic compounds containing seven-membered rings having two nitrogen atoms as the only ring hetero atoms having the nitrogen atoms in positions 1 and 4 not condensed with other rings
  • C07D 211/52 - Oxygen atoms attached in position 4 having an aryl radical as the second substituent in position 4
  • C07D 451/02 - Heterocyclic compounds containing 8-azabicyclo [3.2.1] octane, 9-azabicyclo [3.3.1] nonane, or 3-oxa-9-azatricyclo [3.3.1.02,4] nonane ring systems, e.g. tropane or granatane alkaloids, scopolamineCyclic acetals thereof containing not further condensed 8-azabicyclo [3.2.1] octane or 3-oxa-9-azatricyclo [3.3.1.02,4] nonane ring systems, e.g. tropaneCyclic acetals thereof
  • C07D 207/08 - Heterocyclic compounds containing five-membered rings not condensed with other rings, with one nitrogen atom as the only ring hetero atom with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having no double bonds between ring members or between ring members and non-ring members with hydrocarbon radicals, substituted by hetero atoms, attached to ring carbon atoms
  • C07D 223/04 - Heterocyclic compounds containing seven-membered rings having one nitrogen atom as the only ring hetero atom not condensed with other rings with only hydrogen atoms, halogen atoms, hydrocarbon or substituted hydrocarbon radicals, directly attached to ring carbon atoms
  • C07D 211/28 - Heterocyclic compounds containing hydrogenated pyridine rings, not condensed with other rings with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having no double bonds between ring members or between ring members and non-ring members with hydrocarbon or substituted hydrocarbon radicals directly attached to ring carbon atoms with substituted hydrocarbon radicals attached to ring carbon atoms with hydrocarbon radicals, substituted by nitrogen atoms to which a second hetero atom is attached
  • C07D 211/26 - Heterocyclic compounds containing hydrogenated pyridine rings, not condensed with other rings with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having no double bonds between ring members or between ring members and non-ring members with hydrocarbon or substituted hydrocarbon radicals directly attached to ring carbon atoms with substituted hydrocarbon radicals attached to ring carbon atoms with hydrocarbon radicals, substituted by nitrogen atoms
  • C07D 211/32 - Heterocyclic compounds containing hydrogenated pyridine rings, not condensed with other rings with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having no double bonds between ring members or between ring members and non-ring members with hydrocarbon or substituted hydrocarbon radicals directly attached to ring carbon atoms with substituted hydrocarbon radicals attached to ring carbon atoms with hydrocarbon radicals, substituted by doubly bound oxygen or sulfur atoms or by two oxygen or sulfur atoms singly bound to the same carbon atom by oxygen atoms
  • C07D 241/04 - Heterocyclic compounds containing 1,4-diazine or hydrogenated 1,4-diazine rings not condensed with other rings having no double bonds between ring members or between ring members and non-ring members
  • C07D 211/60 - Carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals
  • C07D 211/70 - Heterocyclic compounds containing hydrogenated pyridine rings, not condensed with other rings with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having one double bond between ring members or between a ring member and a non-ring member with only hydrogen atoms, hydrocarbon or substituted hydrocarbon radicals, directly attached to ring carbon atoms
  • C07D 211/58 - Nitrogen atoms attached in position 4
  • C07D 211/42 - Oxygen atoms attached in position 3 or 5
  • C07D 401/04 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings directly linked by a ring-member-to-ring- member bond
  • C07D 401/06 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings linked by a carbon chain containing only aliphatic carbon atoms
  • C07D 471/10 - Spiro-condensed systems
  • C07D 401/12 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings linked by a chain containing hetero atoms as chain links
  • C07D 413/04 - Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms containing two hetero rings directly linked by a ring-member-to-ring- member bond
  • C07D 405/12 - Heterocyclic compounds containing both one or more hetero rings having oxygen atoms as the only ring hetero atoms, and one or more rings having nitrogen as the only ring hetero atom containing two hetero rings linked by a chain containing hetero atoms as chain links
  • C07D 403/12 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group containing two hetero rings linked by a chain containing hetero atoms as chain links

21.

ARYLMETHYLENE HETEROCYCLIC COMPOUNDS AS KV1.3 POTASSIUM SHAKER CHANNEL BLOCKERS

      
Application Number 17766885
Status Pending
Filing Date 2020-10-06
First Publication Date 2023-01-26
Owner D. E. Shaw Research, LLC (USA)
Inventor
  • Giordanetto, Fabrizio
  • Jensen, Morten Østergaard
  • Jogini, Vishwanath
  • Snow, Roger John

Abstract

A compound of Formula (I) or a pharmaceutically acceptable salt thereof is described, wherein the substituents are as defined herein. Pharmaceutical compositions comprising the same and method of using the same are also described. A compound of Formula (I) or a pharmaceutically acceptable salt thereof is described, wherein the substituents are as defined herein. Pharmaceutical compositions comprising the same and method of using the same are also described.

IPC Classes  ?

  • C07D 211/12 - Heterocyclic compounds containing hydrogenated pyridine rings, not condensed with other rings with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having no double bonds between ring members or between ring members and non-ring members with hydrocarbon or substituted hydrocarbon radicals directly attached to ring carbon atoms with radicals containing only carbon and hydrogen atoms attached to ring carbon atoms with only hydrogen atoms attached to the ring nitrogen atom
  • C07D 401/06 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings linked by a carbon chain containing only aliphatic carbon atoms
  • C07D 401/12 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings linked by a chain containing hetero atoms as chain links
  • C07D 405/04 - Heterocyclic compounds containing both one or more hetero rings having oxygen atoms as the only ring hetero atoms, and one or more rings having nitrogen as the only ring hetero atom containing two hetero rings directly linked by a ring-member-to-ring- member bond
  • C07D 413/06 - Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms containing two hetero rings linked by a carbon chain containing only aliphatic carbon atoms
  • C07D 401/04 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings directly linked by a ring-member-to-ring- member bond
  • C07D 413/04 - Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms containing two hetero rings directly linked by a ring-member-to-ring- member bond
  • C07D 409/06 - Heterocyclic compounds containing two or more hetero rings, at least one ring having sulfur atoms as the only ring hetero atoms containing two hetero rings linked by a carbon chain containing only aliphatic carbon atoms
  • C07D 401/14 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing three or more hetero rings
  • C07D 205/04 - Heterocyclic compounds containing four-membered rings with one nitrogen atom as the only ring hetero atom not condensed with other rings having no double bonds between ring members or between ring members and non-ring members
  • C07D 207/06 - Heterocyclic compounds containing five-membered rings not condensed with other rings, with one nitrogen atom as the only ring hetero atom with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having no double bonds between ring members or between ring members and non-ring members with radicals, containing only hydrogen and carbon atoms, attached to ring carbon atoms
  • C07D 223/04 - Heterocyclic compounds containing seven-membered rings having one nitrogen atom as the only ring hetero atom not condensed with other rings with only hydrogen atoms, halogen atoms, hydrocarbon or substituted hydrocarbon radicals, directly attached to ring carbon atoms
  • C07D 453/02 - Heterocyclic compounds containing quinuclidine or iso-quinuclidine ring systems, e.g. quinine alkaloids containing not further condensed quinuclidine ring systems
  • C07D 417/04 - Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group containing two hetero rings directly linked by a ring-member-to-ring- member bond

22.

ARYLMETHYLENE HETEROCYCLIC COMPOUNDS AS KV1.3 POTASSIUM SHAKER CHANNEL BLOCKERS

      
Application Number 17766889
Status Pending
Filing Date 2020-10-06
First Publication Date 2022-12-29
Owner D. E. Shaw Research, LLC (USA)
Inventor
  • Giordanetto, Fabrizio
  • Jensen, Morten Østergaard
  • Jogini, Vishwanath
  • Snow, Roger John

Abstract

A compound of Formula (I), or a pharmaceutically acceptable salt thereof, is described, wherein the substituents are as defined herein. Pharmaceutical compositions comprising the same and method of using the same are also described. A compound of Formula (I), or a pharmaceutically acceptable salt thereof, is described, wherein the substituents are as defined herein. Pharmaceutical compositions comprising the same and method of using the same are also described.

IPC Classes  ?

  • C07D 207/06 - Heterocyclic compounds containing five-membered rings not condensed with other rings, with one nitrogen atom as the only ring hetero atom with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having no double bonds between ring members or between ring members and non-ring members with radicals, containing only hydrogen and carbon atoms, attached to ring carbon atoms
  • C07D 471/04 - Ortho-condensed systems
  • C07D 491/107 - Spiro-condensed systems with only one oxygen atom as ring hetero atom in the oxygen-containing ring
  • C07D 223/04 - Heterocyclic compounds containing seven-membered rings having one nitrogen atom as the only ring hetero atom not condensed with other rings with only hydrogen atoms, halogen atoms, hydrocarbon or substituted hydrocarbon radicals, directly attached to ring carbon atoms
  • C07D 205/04 - Heterocyclic compounds containing four-membered rings with one nitrogen atom as the only ring hetero atom not condensed with other rings having no double bonds between ring members or between ring members and non-ring members
  • C07D 491/113 - Spiro-condensed systems with two or more oxygen atoms as ring hetero atoms in the oxygen-containing ring
  • C07D 401/04 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings directly linked by a ring-member-to-ring- member bond
  • C07D 401/06 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings linked by a carbon chain containing only aliphatic carbon atoms
  • C07D 413/06 - Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms containing two hetero rings linked by a carbon chain containing only aliphatic carbon atoms
  • C07D 471/10 - Spiro-condensed systems
  • C07D 405/04 - Heterocyclic compounds containing both one or more hetero rings having oxygen atoms as the only ring hetero atoms, and one or more rings having nitrogen as the only ring hetero atom containing two hetero rings directly linked by a ring-member-to-ring- member bond
  • C07D 487/04 - Ortho-condensed systems

23.

SPIROINDOLINONE COMPOUNDS AS KV1.3 POTASSIUM SHAKER CHANNEL BLOCKERS

      
Document Number 03219345
Status Pending
Filing Date 2022-05-27
Open to Public Date 2022-12-01
Owner D.E. SHAW RESEARCH, LLC (USA)
Inventor
  • Giordanetto, Fabrizio
  • Jensen, Morten Ostergaard
  • Jogini, Vishwanath
  • Snow, Roger John

Abstract

A compound of Formula (I) or a pharmaceutically-acceptable salt thereof, is described, wherein the substituents are as defined herein. Pharmaceutical compositions comprising the same and method of using the same are also described.

IPC Classes  ?

  • A61K 31/407 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with one nitrogen as the only ring hetero atom, e.g. sulpiride, succinimide, tolmetin, buflomedil condensed with heterocyclic ring systems, e.g. ketorolac, physostigmine
  • A61K 31/438 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with one nitrogen as the only ring hetero atom the ring being spiro-condensed with carbocyclic or heterocyclic ring systems
  • C07D 471/10 - Spiro-condensed systems
  • C07D 209/54 - Spiro-condensed

24.

SPIROINDOLINONE COMPOUNDS AS KV1.3 POTASSIUM SHAKER CHANNEL BLOCKERS

      
Application Number US2022031229
Publication Number 2022/251561
Status In Force
Filing Date 2022-05-27
Publication Date 2022-12-01
Owner D.E. SHAW RESEARCH, LLC (USA)
Inventor
  • Giordanetto, Fabrizio
  • Jensen, Morten, Østergaard
  • Jogini, Vishwanath
  • Snow, Roger, John

Abstract

A compound of Formula (I) or a pharmaceutically-acceptable salt thereof, is described, wherein the substituents are as defined herein. Pharmaceutical compositions comprising the same and method of using the same are also described.

IPC Classes  ?

  • A61K 31/407 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with one nitrogen as the only ring hetero atom, e.g. sulpiride, succinimide, tolmetin, buflomedil condensed with heterocyclic ring systems, e.g. ketorolac, physostigmine
  • A61K 31/438 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with one nitrogen as the only ring hetero atom the ring being spiro-condensed with carbocyclic or heterocyclic ring systems
  • C07D 471/10 - Spiro-condensed systems
  • C07D 209/54 - Spiro-condensed

25.

ARYL HETEROCYCLIC COMPOUNDS AS KV1.3 POTASSIUM SHAKER CHANNEL BLOCKERS

      
Document Number 03214112
Status Pending
Filing Date 2022-03-29
Open to Public Date 2022-10-06
Owner D.E. SHAW RESEARCH, LLC (USA)
Inventor
  • Giordanetto, Fabrizio
  • Jensen, Morten Ostergaard
  • Jogini, Vishwanath
  • Snow, Roger John

Abstract

A compound of Formula (I), (I'), (II), (II'), (III), or (IV) or a pharmaceutically-acceptable salt thereof, is described, wherein the substituents are as defined herein. Pharmaceutical compositions comprising the same and method of using the same are also described.

IPC Classes  ?

  • C07D 207/08 - Heterocyclic compounds containing five-membered rings not condensed with other rings, with one nitrogen atom as the only ring hetero atom with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having no double bonds between ring members or between ring members and non-ring members with hydrocarbon radicals, substituted by hetero atoms, attached to ring carbon atoms
  • A61K 31/40 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with one nitrogen as the only ring hetero atom, e.g. sulpiride, succinimide, tolmetin, buflomedil
  • A61K 31/4025 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with one nitrogen as the only ring hetero atom, e.g. sulpiride, succinimide, tolmetin, buflomedil not condensed and containing further heterocyclic rings, e.g. cromakalim
  • A61K 31/4155 - 1,2-Diazoles not condensed and containing further heterocyclic rings
  • A61K 31/454 - Non-condensed piperidines, e.g. piperocaine containing further heterocyclic ring systems containing a five-membered ring with nitrogen as a ring hetero atom, e.g. pimozide, domperidone
  • C07D 401/06 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings linked by a carbon chain containing only aliphatic carbon atoms
  • C07D 403/06 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group containing two hetero rings linked by a carbon chain containing only aliphatic carbon atoms

26.

ARYL HETEROCYCLIC COMPOUNDS AS Kv1.3 POTASSIUM SHAKER CHANNEL BLOCKERS

      
Application Number US2022022230
Publication Number 2022/212296
Status In Force
Filing Date 2022-03-29
Publication Date 2022-10-06
Owner D.E. SHAW RESEARCH, LLC (USA)
Inventor
  • Giordanetto, Fabrizio
  • Jensen, Morten Østergaard
  • Jogini, Vishwanath
  • Snow, Roger, John

Abstract

A compound of Formula (I), (I'), (II), (II'), (III), or (IV) or a pharmaceutically-acceptable salt thereof, is described, wherein the substituents are as defined herein. Pharmaceutical compositions comprising the same and method of using the same are also described.

IPC Classes  ?

  • A61P 35/00 - Antineoplastic agents
  • C07D 213/75 - Amino or imino radicals, acylated by carboxylic or carbonic acids, or by sulfur or nitrogen analogues thereof, e.g. carbamates
  • C07D 401/12 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings linked by a chain containing hetero atoms as chain links

27.

MULTIBODY SIMULATION

      
Application Number US2022020915
Publication Number 2022/198026
Status In Force
Filing Date 2022-03-18
Publication Date 2022-09-22
Owner D. E. SHAW RESEARCH, LLC (USA)
Inventor
  • Batson, Brannon
  • Greskamp, Brian, Lee
  • Edwards, Bruce
  • Butts, Jeffrey, Adam
  • Fenton, Christopher, Howard
  • Grossman, Jeffrey, Paul
  • Ierardi, Douglas, John
  • Lerer, Adam
  • Towles, Brian, Patrick
  • Bergdorf, Michael, Edmund
  • Predescu, Cristian
  • Salmon, John, K.
  • Taube, Andrew, Garvin

Abstract

Improvements in a molecular-dynamic simulator provide ways to save energy during computation and reduce die area consumed on an integrated circuit. Examples of such improvements include different interaction modules for different ranges, the use of streaming along rows while multicasting along columns in an array of interaction modules, the selection of computation units based on balancing computational costs and communication costs, the use of fences in networks that connect computation units, and the use of bond calculators to carry out specialized bond calculations.

IPC Classes  ?

  • G16C 10/00 - Computational theoretical chemistry, i.e. ICT specially adapted for theoretical aspects of quantum chemistry, molecular mechanics, molecular dynamics or the like
  • G06F 9/50 - Allocation of resources, e.g. of the central processing unit [CPU]
  • G06F 30/25 - Design optimisation, verification or simulation using particle-based methods
  • G06F 111/10 - Numerical modelling
  • G06F 115/06 - Structured ASICs
  • G06F 119/14 - Force analysis or force optimisation, e.g. static or dynamic forces

28.

Molecular graph generation from structural features using an artificial neural network

      
Application Number 17614856
Grant Number 12217834
Status In Force
Filing Date 2020-05-29
First Publication Date 2022-07-21
Grant Date 2025-02-04
Owner D. E. Shaw Research, LLC (USA)
Inventor
  • Maragakis, Paul
  • Nisonoff, Hunter
  • Skopp, Peter
  • Salmon, John

Abstract

Discovering molecules (which may be known or may never have been cataloged or ever synthesized) that have desired characteristics is addressed using a machine learning approach. As compared to a brute-force search of a database of known molecules, which may not be computationally feasible, the present machine learning approach renders identification of both known and unknown molecules computationally tractable. Furthermore, the computational effort is largely shifted to training of the machine learning system using a database of known molecules, and the generation of molecules to match any particular characteristics requires relatively little computation. The molecules using the present approach may be further studied, for example, with computer-based simulation or after physical synthesis using biological experimentation to ultimately yield useful chemical compounds.

IPC Classes  ?

29.

SRC INHIBITORS AND USES THEREOF

      
Application Number US2021072449
Publication Number 2022/109551
Status In Force
Filing Date 2021-11-17
Publication Date 2022-05-27
Owner
  • RELAY THERAPEUTICS, INC. (USA)
  • D. E. SHAW RESEARCH, LLC (USA)
Inventor
  • Moustakas, Demetri T.
  • Dipietro, Lucian V.
  • Schoenherr, Heike
  • Touré, Bakary-Barry
  • Walters, W. Patrick
  • Murcko, Mark A.
  • Kurukulasuriya, Ravi
  • Pierce, Levi Charles Thomas
  • Giordanetto, Fabrizio
  • Shan, Yibing
  • Sagawa, Shiori
  • Krilov, Goran
  • Mcrobb, Fiona
  • Therrien, Eric

Abstract

The present invention relates to compounds and methods useful for inhibiting non-receptor tyrosine-protein kinase Src ("Src"). The invention also provides pharmaceutically acceptable compositions comprising compounds of the present invention and methods of using said compositions in the treatment of various disorders.

IPC Classes  ?

  • C07D 487/04 - Ortho-condensed systems
  • A61K 31/519 - PyrimidinesHydrogenated pyrimidines, e.g. trimethoprim ortho- or peri-condensed with heterocyclic rings
  • C07H 19/14 - Pyrrolo-pyrimidine radicals

30.

HETEROCYCLIC COMPOUNDS AND THEIR USE IN THE TREATMENT OF AMYLOID-RELATED DISEASES

      
Application Number 17429115
Status Pending
Filing Date 2020-02-06
First Publication Date 2022-05-12
Owner D. E. SHAW RESEARCH, LLC (USA)
Inventor
  • Giordanetto, Fabrizio
  • Campbell-Bezat, Cecily
  • Pan, Albert

Abstract

A compound of Formula (I) or a pharmaceutically acceptable salt thereof is described, wherein the substituents are as defined herein. Pharmaceutical compositions comprising the same and method of using the same are also described. A compound of Formula (I) or a pharmaceutically acceptable salt thereof is described, wherein the substituents are as defined herein. Pharmaceutical compositions comprising the same and method of using the same are also described.

IPC Classes  ?

31.

LACTAM COMPOUNDS AS KV1.3 POTASSIUM SHAKER CHANNEL BLOCKERS

      
Document Number 03193554
Status Pending
Filing Date 2021-10-04
Open to Public Date 2022-04-14
Owner D.E. SHAW RESEARCH, LLC (USA)
Inventor
  • Giordanetto, Fabrizio
  • Jensen, Morten Ostergaard
  • Jogini, Vishwanath
  • Snow, Roger John

Abstract

A compound of Formula (I), or a pharmaceutically acceptable salt thereof, is described, where the substituents are as defined herein. Pharmaceutical compositions including the same and method of using the same are also described.

IPC Classes  ?

  • C07D 207/26 - 2-Pyrrolidones
  • A61K 31/4015 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with one nitrogen as the only ring hetero atom, e.g. sulpiride, succinimide, tolmetin, buflomedil having oxo groups directly attached to the heterocyclic ring, e.g. piracetam, ethosuximide
  • A61K 31/4025 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with one nitrogen as the only ring hetero atom, e.g. sulpiride, succinimide, tolmetin, buflomedil not condensed and containing further heterocyclic rings, e.g. cromakalim
  • A61K 31/4155 - 1,2-Diazoles not condensed and containing further heterocyclic rings
  • A61K 31/4178 - 1,3-Diazoles not condensed and containing further heterocyclic rings, e.g. pilocarpine, nitrofurantoin
  • A61K 31/4192 - 1,2,3-Triazoles
  • A61K 31/4196 - 1,2,4-Triazoles
  • A61K 31/421 - 1,3-Oxazoles, e.g. pemoline, trimethadione
  • A61K 31/422 - Oxazoles not condensed and containing further heterocyclic rings
  • A61K 31/427 - Thiazoles not condensed and containing further heterocyclic rings
  • A61K 31/4439 - Non-condensed pyridinesHydrogenated derivatives thereof containing further heterocyclic ring systems containing a five-membered ring with nitrogen as a ring hetero atom, e.g. omeprazole
  • A61K 31/454 - Non-condensed piperidines, e.g. piperocaine containing further heterocyclic ring systems containing a five-membered ring with nitrogen as a ring hetero atom, e.g. pimozide, domperidone
  • A61K 31/496 - Non-condensed piperazines containing further heterocyclic rings, e.g. rifampin, thiothixene or sparfloxacin
  • A61K 31/506 - PyrimidinesHydrogenated pyrimidines, e.g. trimethoprim not condensed and containing further heterocyclic rings
  • A61K 31/5375 - 1,4-Oxazines, e.g. morpholine
  • C07D 233/70 - One oxygen atom
  • C07D 263/24 - Oxygen atoms attached in position 2 with hydrocarbon radicals, substituted by oxygen atoms, attached to other ring carbon atoms
  • C07D 265/32 - 1,4-OxazinesHydrogenated 1,4-oxazines not condensed with other rings with oxygen atoms directly attached to ring carbon atoms
  • C07D 401/04 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings directly linked by a ring-member-to-ring- member bond
  • C07D 403/04 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group containing two hetero rings directly linked by a ring-member-to-ring- member bond
  • C07D 403/06 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group containing two hetero rings linked by a carbon chain containing only aliphatic carbon atoms
  • C07D 405/04 - Heterocyclic compounds containing both one or more hetero rings having oxygen atoms as the only ring hetero atoms, and one or more rings having nitrogen as the only ring hetero atom containing two hetero rings directly linked by a ring-member-to-ring- member bond
  • C07D 405/06 - Heterocyclic compounds containing both one or more hetero rings having oxygen atoms as the only ring hetero atoms, and one or more rings having nitrogen as the only ring hetero atom containing two hetero rings linked by a carbon chain containing only aliphatic carbon atoms
  • C07D 413/04 - Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms containing two hetero rings directly linked by a ring-member-to-ring- member bond
  • C07D 417/04 - Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group containing two hetero rings directly linked by a ring-member-to-ring- member bond

32.

LACTAM COMPOUNDS AS Kv1.3 POTASSIUM SHAKER CHANNEL BLOCKERS

      
Application Number US2021053320
Publication Number 2022/076285
Status In Force
Filing Date 2021-10-04
Publication Date 2022-04-14
Owner D.E. SHAW RESEARCH, LLC (USA)
Inventor
  • Giordanetto, Fabrizio
  • Jensen, Morten, Østergaard
  • Jogini, Vishwanath
  • Snow, Roger, John

Abstract

A compound of Formula (I), or a pharmaceutically acceptable salt thereof, is described, where the substituents are as defined herein. Pharmaceutical compositions including the same and method of using the same are also described.

IPC Classes  ?

  • A61K 31/05 - Phenols
  • A61K 31/40 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with one nitrogen as the only ring hetero atom, e.g. sulpiride, succinimide, tolmetin, buflomedil
  • A61K 31/4015 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with one nitrogen as the only ring hetero atom, e.g. sulpiride, succinimide, tolmetin, buflomedil having oxo groups directly attached to the heterocyclic ring, e.g. piracetam, ethosuximide
  • C07C 39/04 - Phenol
  • C07D 207/26 - 2-Pyrrolidones
  • C07D 207/263 - 2-Pyrrolidones with only hydrogen atoms or radicals containing only hydrogen and carbon atoms directly attached to other ring carbon atoms

33.

PI3K.ALPHA. INHIBITORS AND METHODS OF USE THEREOF

      
Document Number 03174675
Status Pending
Filing Date 2021-04-29
Open to Public Date 2021-11-04
Owner
  • RELAY THERAPEUTICS, INC. (USA)
  • D.E. SHAW RESEARCH, LLC (USA)
Inventor
  • Boezio, Alessandro
  • Dipietro, Lucian V.
  • Fridrich, Cary Griffin
  • Gunaydin, Hakan
  • Kurukulasuriya, Ravi
  • Lescarbeau, Andre
  • Mader, Mary M.
  • Mclean, Thomas H.
  • Pierce, Levi Charles Thomas
  • Raynor, Kevin David
  • Shortsleeves, Kelley C.
  • Tang, Yong
  • Taylor, Alexander M.
  • Walters, W. Patrick
  • Zhang, Hanmo
  • Giordanetto, Fabrizio
  • Pechersky, Yakov
  • Wang, Qi
  • Atienza, Bren-Jordan
  • Bertrand-Laperle, Megan
  • Burnie, Andrew J.
  • Chen, Fei
  • Chitale, Sampada
  • Gelozia, Shorena
  • Giguere, Jean-Benoit
  • Landagaray, Elodie
  • Larivee, Alexandre
  • Lepitre, Thomas
  • Maertens, Gaetan
  • Outin, Johanne
  • Pal, Mohan
  • Sturino, Claudio
  • Tanveer, Kashif
  • Thorat, Rakesh
  • Vemula, Naresh
  • Krueger, Elaine B.
  • Pan, Yue
  • Deninno, Michael Paul
  • Bousquet, Yves
  • Jobin-Des Lauriers, Antoine
  • Lee, Jessica
  • Mohamed, Tarek

Abstract

The present disclosure relates to novel compounds and pharmaceutical compositions thereof, and methods for inhibiting the activity of PI3K-? enzymes with the compounds and compositions of the disclosure. The present disclosure further relates to, but is not limited to, methods for treating disorders associated with PI3K-? signaling with the compounds and compositions of the disclosure.

IPC Classes  ?

34.

PI3K-α INHIBITORS AND METHODS OF USE THEREOF

      
Application Number US2021029882
Publication Number 2021/222556
Status In Force
Filing Date 2021-04-29
Publication Date 2021-11-04
Owner
  • RELAY THERAPEUTICS, INC. (USA)
  • D.E. SHAW RESEARCH, LLC (USA)
Inventor
  • Boezio, Alessandro
  • Dipietro, Lucian V.
  • Fridrich, Cary Griffin
  • Gunaydin, Hakan
  • Kurukulasuriya, Ravi
  • Lescarbeau, Andre
  • Mader, Mary M.
  • Mclean, Thomas H.
  • Pierce, Levi Charles Thomas
  • Raynor, Kevin David
  • Shortsleeves, Kelley C.
  • Tang, Yong
  • Taylor, Alexander M.
  • Walters, W. Patrick
  • Zhang, Hanmo
  • Giordanetto, Fabrizio
  • Pechersky, Yakov
  • Wang, Qi
  • Atienza, Bren-Jordan
  • Bertrand-Laperle, Megan
  • Burnie, Andrew J.
  • Chen, Fei
  • Chitale, Sampada
  • Gelozia, Shorena
  • Giguere, Jean-Benoit
  • Landagaray, Elodie
  • Larivee, Alexandre
  • Lepitre, Thomas
  • Maertens, Gaetan
  • Outin, Johanne
  • Pal, Mohan
  • Sturino, Claudio
  • Tanveer, Kashif
  • Thorat, Rakesh
  • Vemula, Naresh
  • Krueger, Elaine B.
  • Pan, Yue
  • Deninno, Michael Paul
  • Bousquet, Yves
  • Jobin-Des Lauriers, Antoine
  • Lee, Jessica
  • Mohammed, Tarek

Abstract

The present disclosure relates to novel compounds and pharmaceutical compositions thereof, and methods for inhibiting the activity of PI3K-α enzymes with the compounds and compositions of the disclosure. The present disclosure further relates to, but is not limited to, methods for treating disorders associated with PI3K-α signaling with the compounds and compositions of the disclosure.

IPC Classes  ?

35.

ARYLMETHYLENE HETEROCYCLIC COMPOUNDS AS KV1.3 POTASSIUM SHAKER CHANNEL BLOCKERS

      
Document Number 03157031
Status Pending
Filing Date 2020-10-06
Open to Public Date 2021-04-15
Owner D.E. SHAW RESEARCH, LLC (USA)
Inventor
  • Giordanetto, Fabrizio
  • Jensen, Morten Ostergaard
  • Jogini, Vishwanath
  • Snow, Roger John

Abstract

A compound of Formula Ior a pharmaceutically acceptable salt thereof, wherein the substituents are as defined herein. Pharmaceutical compositions comprising the same and methods of using the same as a Kv1.3 channel blocker are also described. Such compounds can be used in therapy, e.g. in the treatment of cancer, immunological disorders, Central Nerve System (CNS) disorders, inflammatory disorders, gastroenterological disorders, metabolic disorders, cardiovascular disorders, and kidney disease.

IPC Classes  ?

  • C07D 211/22 - Heterocyclic compounds containing hydrogenated pyridine rings, not condensed with other rings with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having no double bonds between ring members or between ring members and non-ring members with hydrocarbon or substituted hydrocarbon radicals directly attached to ring carbon atoms with substituted hydrocarbon radicals attached to ring carbon atoms with hydrocarbon radicals, substituted by singly bound oxygen or sulfur atoms by oxygen atoms
  • A61K 31/397 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having four-membered rings, e.g. azetidine
  • A61K 31/40 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with one nitrogen as the only ring hetero atom, e.g. sulpiride, succinimide, tolmetin, buflomedil
  • A61K 31/403 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with one nitrogen as the only ring hetero atom, e.g. sulpiride, succinimide, tolmetin, buflomedil condensed with carbocyclic rings, e.g. carbazole
  • A61K 31/4245 - Oxadiazoles
  • A61K 31/437 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with one nitrogen as the only ring hetero atom ortho- or peri-condensed with heterocyclic ring systems the heterocyclic ring system containing a five-membered ring having nitrogen as a ring hetero atom, e.g. indolizine, beta-carboline
  • A61K 31/438 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with one nitrogen as the only ring hetero atom the ring being spiro-condensed with carbocyclic or heterocyclic ring systems
  • A61K 31/445 - Non-condensed piperidines, e.g. piperocaine
  • A61K 31/4523 - Non-condensed piperidines, e.g. piperocaine containing further heterocyclic ring systems
  • A61K 31/453 - Non-condensed piperidines, e.g. piperocaine containing further heterocyclic ring systems containing a six-membered ring with oxygen as a ring hetero atom
  • A61K 31/454 - Non-condensed piperidines, e.g. piperocaine containing further heterocyclic ring systems containing a five-membered ring with nitrogen as a ring hetero atom, e.g. pimozide, domperidone
  • A61K 31/495 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with two nitrogen atoms as the only ring hetero atoms, e.g. piperazine
  • A61K 31/4985 - Pyrazines or piperazines ortho- or peri-condensed with heterocyclic ring systems
  • A61K 31/5375 - 1,4-Oxazines, e.g. morpholine
  • A61K 31/55 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having seven-membered rings, e.g. azelastine, pentylenetetrazole
  • A61P 1/00 - Drugs for disorders of the alimentary tract or the digestive system
  • A61P 3/00 - Drugs for disorders of the metabolism
  • A61P 9/10 - Drugs for disorders of the cardiovascular system for treating ischaemic or atherosclerotic diseases, e.g. antianginal drugs, coronary vasodilators, drugs for myocardial infarction, retinopathy, cerebrovascula insufficiency, renal arteriosclerosis
  • A61P 13/12 - Drugs for disorders of the urinary system of the kidneys
  • A61P 25/28 - Drugs for disorders of the nervous system for treating neurodegenerative disorders of the central nervous system, e.g. nootropic agents, cognition enhancers, drugs for treating Alzheimer's disease or other forms of dementia
  • A61P 35/00 - Antineoplastic agents
  • A61P 37/06 - Immunosuppressants, e.g. drugs for graft rejection
  • C07D 205/04 - Heterocyclic compounds containing four-membered rings with one nitrogen atom as the only ring hetero atom not condensed with other rings having no double bonds between ring members or between ring members and non-ring members
  • C07D 207/08 - Heterocyclic compounds containing five-membered rings not condensed with other rings, with one nitrogen atom as the only ring hetero atom with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having no double bonds between ring members or between ring members and non-ring members with hydrocarbon radicals, substituted by hetero atoms, attached to ring carbon atoms
  • C07D 209/02 - Heterocyclic compounds containing five-membered rings, condensed with other rings, with one nitrogen atom as the only ring hetero atom condensed with one carbocyclic ring
  • C07D 211/26 - Heterocyclic compounds containing hydrogenated pyridine rings, not condensed with other rings with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having no double bonds between ring members or between ring members and non-ring members with hydrocarbon or substituted hydrocarbon radicals directly attached to ring carbon atoms with substituted hydrocarbon radicals attached to ring carbon atoms with hydrocarbon radicals, substituted by nitrogen atoms
  • C07D 211/48 - Oxygen atoms attached in position 4 having an acyclic carbon atom attached in position 4
  • C07D 211/54 - Sulfur atoms
  • C07D 211/58 - Nitrogen atoms attached in position 4
  • C07D 211/60 - Carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals
  • C07D 223/04 - Heterocyclic compounds containing seven-membered rings having one nitrogen atom as the only ring hetero atom not condensed with other rings with only hydrogen atoms, halogen atoms, hydrocarbon or substituted hydrocarbon radicals, directly attached to ring carbon atoms
  • C07D 241/04 - Heterocyclic compounds containing 1,4-diazine or hydrogenated 1,4-diazine rings not condensed with other rings having no double bonds between ring members or between ring members and non-ring members
  • C07D 265/30 - 1,4-OxazinesHydrogenated 1,4-oxazines not condensed with other rings
  • C07D 295/185 - Radicals derived from carboxylic acids from aliphatic carboxylic acids
  • C07D 403/04 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group containing two hetero rings directly linked by a ring-member-to-ring- member bond
  • C07D 405/04 - Heterocyclic compounds containing both one or more hetero rings having oxygen atoms as the only ring hetero atoms, and one or more rings having nitrogen as the only ring hetero atom containing two hetero rings directly linked by a ring-member-to-ring- member bond
  • C07D 471/04 - Ortho-condensed systems
  • C07D 487/04 - Ortho-condensed systems
  • C07D 491/107 - Spiro-condensed systems with only one oxygen atom as ring hetero atom in the oxygen-containing ring
  • C07D 491/113 - Spiro-condensed systems with two or more oxygen atoms as ring hetero atoms in the oxygen-containing ring

36.

ARYL HETEROBICYCLIC COMPOUNDS AS KV1.3 POTASSIUM SHAKER CHANNEL BLOCKERS

      
Application Number US2020054348
Publication Number 2021/071803
Status In Force
Filing Date 2020-10-06
Publication Date 2021-04-15
Owner D.E. SHAW RESEARCH, LLC (USA)
Inventor
  • Giordanetto, Fabrizio
  • Jensen, Morten, Østergaard
  • Jogini, Vishwanath
  • Snow, Roger, John

Abstract

A compound of Formula (I), or a pharmaceutically acceptable salt thereof, is described, where the substituents are as defined herein. Pharmaceutical compositions including the same and method of using the same are also described.

IPC Classes  ?

  • A61P 35/00 - Antineoplastic agents
  • C07D 213/75 - Amino or imino radicals, acylated by carboxylic or carbonic acids, or by sulfur or nitrogen analogues thereof, e.g. carbamates
  • C07D 401/12 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings linked by a chain containing hetero atoms as chain links

37.

ARYLMETHYLENE AROMATIC COMPOUNDS AS KV1.3 POTASSIUM SHAKER CHANNEL BLOCKERS

      
Application Number US2020054373
Publication Number 2021/071821
Status In Force
Filing Date 2020-10-06
Publication Date 2021-04-15
Owner D.E. SHAW RESEARCH, LLC (USA)
Inventor
  • Giordanetto, Fabrizio
  • Jensen, Morten, Østergaard
  • Jogini, Vishwanath
  • Snow, Roger, John

Abstract

A compound of Formula (I), or a pharmaceutically acceptable salt thereof, is described, wherein the substituents are as defined herein. Pharmaceutical compositions comprising the same and method of using the same are also described.

IPC Classes  ?

  • A61K 31/4245 - Oxadiazoles
  • A61K 31/433 - Thiadiazoles
  • A61K 45/06 - Mixtures of active ingredients without chemical characterisation, e.g. antiphlogistics and cardiaca

38.

ARYL HETEROBICYCLIC COMPOUNDS AS KV1.3 POTASSIUM SHAKER CHANNEL BLOCKERS

      
Application Number US2020054393
Publication Number 2021/071832
Status In Force
Filing Date 2020-10-06
Publication Date 2021-04-15
Owner D.E. SHAW RESEARCH, LLC (USA)
Inventor
  • Giordanetto, Fabrizio
  • Jensen, Morten, Østergaard
  • Jogini, Vishwanath
  • Snow, Roger, John

Abstract

A compound of Formula (I), or a pharmaceutically acceptable salt thereof, is described, where the substituents are as defined herein. Pharmaceutical compositions including the same and method of using the same are also described.

IPC Classes  ?

  • A61P 35/00 - Antineoplastic agents
  • C07D 213/75 - Amino or imino radicals, acylated by carboxylic or carbonic acids, or by sulfur or nitrogen analogues thereof, e.g. carbamates
  • C07D 401/12 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings linked by a chain containing hetero atoms as chain links

39.

ARYL HETEROBICYCLIC COMPOUNDS AS KV1.3 POTASSIUM SHAKER CHANNEL BLOCKERS

      
Document Number 03156981
Status Pending
Filing Date 2020-10-06
Open to Public Date 2021-04-15
Owner D.E. SHAW RESEARCH, LLC (USA)
Inventor
  • Giordanetto, Fabrizio
  • Jensen, Morten Ostergaard
  • Jogini, Vishwanath
  • Snow, Roger John

Abstract

A compound of Formula (I), or a pharmaceutically acceptable salt thereof, is described, where the substituents are as defined herein. Pharmaceutical compositions including the same and method of using the same are also described.

IPC Classes  ?

  • C07D 471/04 - Ortho-condensed systems
  • A61K 31/437 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with one nitrogen as the only ring hetero atom ortho- or peri-condensed with heterocyclic ring systems the heterocyclic ring system containing a five-membered ring having nitrogen as a ring hetero atom, e.g. indolizine, beta-carboline
  • A61K 31/4985 - Pyrazines or piperazines ortho- or peri-condensed with heterocyclic ring systems
  • A61K 31/53 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with three nitrogens as the only ring hetero atoms, e.g. chlorazanil, melamine
  • A61K 31/551 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having seven-membered rings, e.g. azelastine, pentylenetetrazole having two nitrogens as ring hetero atoms, e.g. clozapine, dilazep
  • A61P 1/00 - Drugs for disorders of the alimentary tract or the digestive system
  • A61P 3/00 - Drugs for disorders of the metabolism
  • A61P 9/10 - Drugs for disorders of the cardiovascular system for treating ischaemic or atherosclerotic diseases, e.g. antianginal drugs, coronary vasodilators, drugs for myocardial infarction, retinopathy, cerebrovascula insufficiency, renal arteriosclerosis
  • A61P 13/12 - Drugs for disorders of the urinary system of the kidneys
  • A61P 17/00 - Drugs for dermatological disorders
  • A61P 25/28 - Drugs for disorders of the nervous system for treating neurodegenerative disorders of the central nervous system, e.g. nootropic agents, cognition enhancers, drugs for treating Alzheimer's disease or other forms of dementia
  • A61P 35/00 - Antineoplastic agents
  • A61P 37/06 - Immunosuppressants, e.g. drugs for graft rejection
  • C07D 471/14 - Ortho-condensed systems

40.

ARYL HETEROBICYCLIC COMPOUNDS AS KV1.3 POTASSIUM SHAKER CHANNEL BLOCKERS

      
Document Number 03157020
Status Pending
Filing Date 2020-10-06
Open to Public Date 2021-04-15
Owner D.E. SHAW RESEARCH, LLC (USA)
Inventor
  • Giordanetto, Fabrizio
  • Jensen, Morten Ostergaard
  • Jogini, Vishwanath
  • Snow, Roger John

Abstract

A compound of Formula (I), or a pharmaceutically acceptable salt thereof, is described, where the substituents are as defined herein. Pharmaceutical compositions including the same and method of using the same are also described.

IPC Classes  ?

  • C07D 471/04 - Ortho-condensed systems
  • A61K 31/407 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with one nitrogen as the only ring hetero atom, e.g. sulpiride, succinimide, tolmetin, buflomedil condensed with heterocyclic ring systems, e.g. ketorolac, physostigmine
  • A61K 31/4188 - 1,3-Diazoles condensed with heterocyclic ring systems, e.g. biotin, sorbinil
  • A61K 31/424 - Oxazoles condensed with heterocyclic ring systems, e.g. clavulanic acid
  • A61K 31/437 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with one nitrogen as the only ring hetero atom ortho- or peri-condensed with heterocyclic ring systems the heterocyclic ring system containing a five-membered ring having nitrogen as a ring hetero atom, e.g. indolizine, beta-carboline
  • A61K 31/4985 - Pyrazines or piperazines ortho- or peri-condensed with heterocyclic ring systems
  • A61K 31/506 - PyrimidinesHydrogenated pyrimidines, e.g. trimethoprim not condensed and containing further heterocyclic rings
  • A61K 31/5365 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with at least one nitrogen and at least one oxygen as the ring hetero atoms, e.g. 1,2-oxazines ortho- or peri-condensed with heterocyclic ring systems
  • A61K 31/5383 - 1,4-Oxazines, e.g. morpholine ortho- or peri-condensed with heterocyclic ring systems
  • A61K 31/551 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having seven-membered rings, e.g. azelastine, pentylenetetrazole having two nitrogens as ring hetero atoms, e.g. clozapine, dilazep
  • A61P 1/00 - Drugs for disorders of the alimentary tract or the digestive system
  • A61P 3/00 - Drugs for disorders of the metabolism
  • A61P 9/10 - Drugs for disorders of the cardiovascular system for treating ischaemic or atherosclerotic diseases, e.g. antianginal drugs, coronary vasodilators, drugs for myocardial infarction, retinopathy, cerebrovascula insufficiency, renal arteriosclerosis
  • A61P 13/12 - Drugs for disorders of the urinary system of the kidneys
  • A61P 17/00 - Drugs for dermatological disorders
  • A61P 25/28 - Drugs for disorders of the nervous system for treating neurodegenerative disorders of the central nervous system, e.g. nootropic agents, cognition enhancers, drugs for treating Alzheimer's disease or other forms of dementia
  • A61P 35/00 - Antineoplastic agents
  • A61P 37/06 - Immunosuppressants, e.g. drugs for graft rejection
  • C07D 487/04 - Ortho-condensed systems
  • C07D 498/04 - Ortho-condensed systems

41.

ARYLMETHYLENE AROMATIC COMPOUNDS AS KV1.3 POTASSIUM SHAKER CHANNEL BLOCKERS

      
Document Number 03157026
Status Pending
Filing Date 2020-10-06
Open to Public Date 2021-04-15
Owner D.E. SHAW RESEARCH, LLC (USA)
Inventor
  • Giordanetto, Fabrizio
  • Jensen, Morten Ostergaard
  • Jogini, Vishwanath
  • Snow, Roger John

Abstract

A compound of Formula (I), or a pharmaceutically acceptable salt thereof, is described, wherein the substituents are as defined herein. Pharmaceutical compositions comprising the same and method of using the same are also described.

IPC Classes  ?

  • C07D 213/30 - Oxygen atoms
  • A61K 31/135 - Amines, e.g. amantadine having aromatic rings, e.g. methadone
  • A61K 31/277 - NitrilesIsonitriles having a ring, e.g. verapamil
  • A61K 31/397 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having four-membered rings, e.g. azetidine
  • A61K 31/40 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with one nitrogen as the only ring hetero atom, e.g. sulpiride, succinimide, tolmetin, buflomedil
  • A61K 31/4035 - Isoindoles, e.g. phthalimide
  • A61K 31/404 - Indoles, e.g. pindolol
  • A61K 31/415 - 1,2-Diazoles
  • A61K 31/44 - Non-condensed pyridinesHydrogenated derivatives thereof
  • A61K 31/4409 - Non-condensed pyridinesHydrogenated derivatives thereof only substituted in position 4, e.g. isoniazid, iproniazid
  • A61K 31/4427 - Non-condensed pyridinesHydrogenated derivatives thereof containing further heterocyclic ring systems
  • A61K 31/4439 - Non-condensed pyridinesHydrogenated derivatives thereof containing further heterocyclic ring systems containing a five-membered ring with nitrogen as a ring hetero atom, e.g. omeprazole
  • A61K 31/445 - Non-condensed piperidines, e.g. piperocaine
  • A61K 31/4465 - Non-condensed piperidines, e.g. piperocaine only substituted in position 4
  • A61K 31/4965 - Non-condensed pyrazines
  • A61K 31/505 - PyrimidinesHydrogenated pyrimidines, e.g. trimethoprim
  • A61K 31/5375 - 1,4-Oxazines, e.g. morpholine
  • C07C 215/50 - Compounds containing amino and hydroxy groups bound to the same carbon skeleton having hydroxy groups bound to carbon atoms of at least one six-membered aromatic ring and amino groups bound to acyclic carbon atoms or to carbon atoms of rings other than six-membered aromatic rings of the same carbon skeleton with amino groups linked to the six-membered aromatic ring, or to the condensed ring system containing that ring, by carbon chains not further substituted by hydroxy groups with amino groups and the six-membered aromatic ring, or the condensed ring system containing that ring, bound to the same carbon atom of the carbon chain
  • C07C 235/06 - Carboxylic acid amides, the carbon skeleton of the acid part being further substituted by oxygen atoms having carbon atoms of carboxamide groups bound to acyclic carbon atoms and singly-bound oxygen atoms bound to the same carbon skeleton the carbon skeleton being acyclic and saturated having the nitrogen atoms of the carboxamide groups bound to hydrogen atoms or to acyclic carbon atoms
  • C07C 237/30 - Carboxylic acid amides, the carbon skeleton of the acid part being further substituted by amino groups having the carbon atom of at least one of the carboxamide groups bound to a carbon atom of a non-condensed six-membered aromatic ring of the carbon skeleton having the nitrogen atom of the carboxamide group bound to hydrogen atoms or to acyclic carbon atoms
  • C07C 255/50 - Carboxylic acid nitriles having cyano groups bound to carbon atoms of six-membered aromatic rings of a carbon skeleton to carbon atoms of non-condensed six-membered aromatic rings
  • C07D 205/04 - Heterocyclic compounds containing four-membered rings with one nitrogen atom as the only ring hetero atom not condensed with other rings having no double bonds between ring members or between ring members and non-ring members
  • C07D 207/16 - Carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals
  • C07D 209/08 - IndolesHydrogenated indoles with only hydrogen atoms or radicals containing only hydrogen and carbon atoms, directly attached to carbon atoms of the hetero ring
  • C07D 209/44 - Iso-indolesHydrogenated iso-indoles
  • C07D 211/60 - Carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals
  • C07D 213/38 - Radicals substituted by singly-bound nitrogen atoms having only hydrogen or hydrocarbon radicals attached to the substituent nitrogen atom
  • C07D 213/643 - 2-PhenoxypyridinesDerivatives thereof
  • C07D 213/73 - Unsubstituted amino or imino radicals
  • C07D 213/82 - AmidesImides in position 3
  • C07D 231/12 - Heterocyclic compounds containing 1,2-diazole or hydrogenated 1,2-diazole rings not condensed with other rings having two or three double bonds between ring members or between ring members and non-ring members with only hydrogen atoms, hydrocarbon or substituted hydrocarbon radicals, directly attached to ring carbon atoms
  • C07D 239/26 - Heterocyclic compounds containing 1,3-diazine or hydrogenated 1,3-diazine rings not condensed with other rings having three or more double bonds between ring members or between ring members and non-ring members with only hydrogen atoms, hydrocarbon or substituted hydrocarbon radicals, directly attached to ring carbon atoms
  • C07D 241/12 - Heterocyclic compounds containing 1,4-diazine or hydrogenated 1,4-diazine rings not condensed with other rings having three double bonds between ring members or between ring members and non-ring members with only hydrogen atoms, hydrocarbon or substituted hydrocarbon radicals, directly attached to ring carbon atoms
  • C07D 265/30 - 1,4-OxazinesHydrogenated 1,4-oxazines not condensed with other rings
  • C07D 401/06 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings linked by a carbon chain containing only aliphatic carbon atoms
  • C07D 401/12 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings linked by a chain containing hetero atoms as chain links

42.

ARYL HETEROCYCLIC COMPOUNDS AS KV1.3 POTASSIUM SHAKER CHANNEL BLOCKERS

      
Application Number US2020054347
Publication Number 2021/071802
Status In Force
Filing Date 2020-10-06
Publication Date 2021-04-15
Owner D. E. SHAW RESEARCH, LLC (USA)
Inventor
  • Giordanetto, Fabrizio
  • Jensen, Morten, Østergaard
  • Jogini, Vishwanath
  • Snow, Roger, John

Abstract

A compound of Formula (I), or a pharmaceutically-acceptable salt thereof, is described, wherein the substituents are as defined herein. Pharmaceutical compositions comprising the same and method of using the same are also described.

IPC Classes  ?

  • A61P 35/00 - Antineoplastic agents
  • C07D 213/75 - Amino or imino radicals, acylated by carboxylic or carbonic acids, or by sulfur or nitrogen analogues thereof, e.g. carbamates
  • C07D 401/12 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings linked by a chain containing hetero atoms as chain links

43.

ARYLMETHYLENE HETEROCYCLIC COMPOUNDS AS KV1.3 POTASSIUM SHAKER CHANNEL BLOCKERS

      
Application Number US2020054352
Publication Number 2021/071806
Status In Force
Filing Date 2020-10-06
Publication Date 2021-04-15
Owner D. E. SHAW RESEARCH, LLC (USA)
Inventor
  • Giordanetto, Fabrizio
  • Jensen, Morten, Østergaard
  • Jogini, Vishwanath
  • Snow, Roger, John

Abstract

A compound of Formula (I) or a pharmaceutically acceptable salt thereof is described, wherein the substituents are as defined herein. Pharmaceutical compositions comprising the same and method of using the same are also described.

IPC Classes  ?

  • A61K 31/4245 - Oxadiazoles
  • A61K 31/433 - Thiadiazoles
  • A61K 45/06 - Mixtures of active ingredients without chemical characterisation, e.g. antiphlogistics and cardiaca

44.

ARYLMETHYLENE HETEROCYCLIC COMPOUNDS AS KV1.3 POTASSIUM SHAKER CHANNEL BLOCKERS

      
Application Number US2020054360
Publication Number 2021/071812
Status In Force
Filing Date 2020-10-06
Publication Date 2021-04-15
Owner D.E. SHAW RESEARCH, LLC (USA)
Inventor
  • Giordanetto, Fabrizio
  • Jensen, Morten, Østergaard
  • Jogini, Vishwanath
  • Snow, Roger, John

Abstract

A compound of Formula (I), or a pharmaceutically acceptable salt thereof, is described, wherein the substituents are as defined herein. Pharmaceutical compositions comprising the same and method of using the same are also described.

IPC Classes  ?

  • A61K 31/4245 - Oxadiazoles
  • A61K 31/433 - Thiadiazoles
  • A61K 45/06 - Mixtures of active ingredients without chemical characterisation, e.g. antiphlogistics and cardiaca

45.

Pyrazolo[3,4-b]pyrazine SHP2 phosphatase inhibitors and methods of use thereof

      
Application Number 16982395
Grant Number 12138263
Status In Force
Filing Date 2019-03-21
First Publication Date 2021-03-11
Grant Date 2024-11-12
Owner
  • Relay Therapeutics, Inc. (USA)
  • D.E. Shaw Research, LLC (USA)
Inventor
  • Taylor, Alexander M.
  • Giordanetto, Fabrizio
  • Greisman, Jack Benjamin
  • Maragakis, Paul
  • Schoenherr, Heike

Abstract

The present disclosure relates to novel compounds and pharmaceutical compositions thereof, and methods for inhibiting the activity of SHP2 phosphatase with the compounds and compositions of the disclosure. The present disclosure further relates to methods for treating disorders associated with SHP2 deregulation with the compounds and compositions of the disclosure.

IPC Classes  ?

  • A61K 31/4985 - Pyrazines or piperazines ortho- or peri-condensed with heterocyclic ring systems
  • A61K 38/46 - Hydrolases (3)
  • A61K 45/06 - Mixtures of active ingredients without chemical characterisation, e.g. antiphlogistics and cardiaca
  • A61K 47/64 - Drug-peptide, drug-protein or drug-polyamino acid conjugates, i.e. the modifying agent being a peptide, protein or polyamino acid which is covalently bonded or complexed to a therapeutically active agent
  • C07D 487/04 - Ortho-condensed systems
  • C07D 519/00 - Heterocyclic compounds containing more than one system of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring system not provided for in groups or

46.

MOLECULAR GRAPH GENERATION FROM STRUCTURAL FEATURES USING AN ARTIFICIAL NEURAL NETWORK

      
Application Number US2020035137
Publication Number 2020/243440
Status In Force
Filing Date 2020-05-29
Publication Date 2020-12-03
Owner D. E. SHAW RESEARCH, LLC. (USA)
Inventor
  • Maragakis, Paul
  • Nisonoff, Hunter
  • Skopp, Peter
  • Salmon, John

Abstract

Discovering molecules (which may be known or may never have been cataloged or ever synthesized) that have desired characteristics is addressed using a machine learning approach. As compared to a brute-force search of a database of known molecules, which may not be computationally feasible, the present machine learning approach renders identification of both known and unknown molecules computationally tractable. Furthermore, the computational effort is largely shifted to training of the machine learning system using a database of known molecules, and the generation of molecules to match any particular characteristics requires relatively little computation. The molecules using the present approach may be further studied, for example, with computer-based simulation or after physical synthesis using biological experimentation to ultimately yield useful chemical compounds.

IPC Classes  ?

47.

FGFR INHIBITORS AND METHODS OF USE THEREOF

      
Application Number US2020032474
Publication Number 2020/231990
Status In Force
Filing Date 2020-05-12
Publication Date 2020-11-19
Owner
  • RELAY THERAPEUTICS, INC. (USA)
  • D.E. SHAW RESEARCH, LLC (USA)
Inventor
  • Toure, Barry
  • Schoenherr, Heike
  • Taylor, Alexander M.
  • Giordanetto, Fabrizio
  • Moustakas, Demetri T.
  • Mclean, Thomas H.
  • Hudson, Brandi M.
  • Mader, Mary M.
  • Ayaz, Pelin
  • Sharon, Dina A.
  • Kurukulasuriya, Ravi
  • Boezio, Alessandro

Abstract

The present disclosure relates to novel compounds and pharmaceutical compositions thereof, and methods for inhibiting the activity of FGFR enzymes with the compounds and compositions of the disclosure. The present disclosure further relates to, but is not limited to, methods for treating disorders associated with FGFR signaling with the compounds and compositions of the disclosure.

IPC Classes  ?

  • A61K 31/519 - PyrimidinesHydrogenated pyrimidines, e.g. trimethoprim ortho- or peri-condensed with heterocyclic rings
  • C07D 487/04 - Ortho-condensed systems

48.

FGFR INHIBITORS AND METHODS OF USE THEREOF

      
Document Number 03137458
Status Pending
Filing Date 2020-05-12
Open to Public Date 2020-11-19
Owner
  • RELAY THERAPEUTICS, INC. (USA)
  • D.E. SHAW RESEARCH, LLC (USA)
Inventor
  • Toure, Bakary-Barry
  • Schoenherr, Heike
  • Taylor, Alexander M.
  • Giordanetto, Fabrizio
  • Moustakas, Demetri T.
  • Mclean, Thomas H.
  • Hudson, Brandi M.
  • Mader, Mary M.
  • Ayaz, Pelin
  • Sharon, Dina A.
  • Kurukulasuriya, Ravi
  • Boezio, Alessandro

Abstract

The present disclosure relates to novel compounds and pharmaceutical compositions thereof, and methods for inhibiting the activity of FGFR enzymes with the compounds and compositions of the disclosure. The present disclosure further relates to, but is not limited to, methods for treating disorders associated with FGFR signaling with the compounds and compositions of the disclosure.

IPC Classes  ?

  • C07D 487/04 - Ortho-condensed systems
  • A61K 31/519 - PyrimidinesHydrogenated pyrimidines, e.g. trimethoprim ortho- or peri-condensed with heterocyclic rings
  • A61K 31/5377 - 1,4-Oxazines, e.g. morpholine not condensed and containing further heterocyclic rings, e.g. timolol
  • A61K 31/5386 - 1,4-Oxazines, e.g. morpholine spiro-condensed or forming part of bridged ring systems
  • A61K 31/55 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having seven-membered rings, e.g. azelastine, pentylenetetrazole
  • A61K 31/553 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having seven-membered rings, e.g. azelastine, pentylenetetrazole having at least one nitrogen and at least one oxygen as ring hetero atoms, e.g. loxapine, staurosporine
  • A61P 35/00 - Antineoplastic agents
  • C07D 471/22 - Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups in which the condensed systems contains four or more hetero rings
  • C07D 498/22 - Heterocyclic compounds containing in the condensed system at least one hetero ring having nitrogen and oxygen atoms as the only ring hetero atoms in which the condensed system contains four or more hetero rings
  • C07D 519/00 - Heterocyclic compounds containing more than one system of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring system not provided for in groups or

49.

HETEROCYCLIC COMPOUNDS AND THEIR USE IN THE TREATMENT OF AMYLOID-RELATED DISEASES

      
Application Number US2020016934
Publication Number 2020/167567
Status In Force
Filing Date 2020-02-06
Publication Date 2020-08-20
Owner D.E. SHAW RESEARCH, LLC (USA)
Inventor
  • Giordanetto, Fabrizio
  • Campbell-Bezat, Cecily
  • Pan, Albert

Abstract

A compound of Formula (I) or a pharmaceutically acceptable salt thereof is described, wherein the substituents are as defined herein. Pharmaceutical compositions comprising the same and method of using the same are also described.

IPC Classes  ?

  • C07D 235/28 - Sulfur atoms
  • C07D 401/12 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings linked by a chain containing hetero atoms as chain links
  • C07D 487/04 - Ortho-condensed systems

50.

Pyrazolo[3,4-b]pyrazine derivatives as SHP2 phosphatase inhibitors

      
Application Number 16651733
Grant Number 11701354
Status In Force
Filing Date 2018-09-28
First Publication Date 2020-08-13
Grant Date 2023-07-18
Owner
  • D. E. Shaw Research, LLC (USA)
  • Relay Therapeutics, Inc. (USA)
Inventor
  • Taylor, Alexander M.
  • Walters, W. Patrick
  • Murcko, Mark Andrew
  • Giordanetto, Fabrizio
  • Therrien, Eric
  • Bhat, Sathesh
  • Dahlgren, Markus Kristofer

Abstract

Cellular biological activities are tightly controlled by intracellular signaling processes initiated by extracellular signals. Protein tyrosine phosphatases, which remove phosphate groups from tyrosine phosphorylated signaling molecules, play equally important tyrosine roles as protein kinases in signal transduction. SHP-2, a cytoplasmic SH2 domain containing protein tyrosine phosphatase, is involved in the signaling pathways of a variety of growth factors and cytokines. Recent studies have clearly demonstrated that this phosphatase plays an important role in transducing signal relay from the cell surface to the nucleus, and is a critical intracellular regulator in mediating cell proliferation and differentiation.

IPC Classes  ?

  • A61K 31/4985 - Pyrazines or piperazines ortho- or peri-condensed with heterocyclic ring systems
  • C07D 487/04 - Ortho-condensed systems
  • A61K 45/06 - Mixtures of active ingredients without chemical characterisation, e.g. antiphlogistics and cardiaca
  • C07D 519/00 - Heterocyclic compounds containing more than one system of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring system not provided for in groups or

51.

Substituted pyrazolo[3,4-b]pyrazines as SHP2 phosphatase inhibitors

      
Application Number 16616361
Grant Number 11591336
Status In Force
Filing Date 2018-05-25
First Publication Date 2020-06-04
Grant Date 2023-02-28
Owner
  • D. E. Shaw Research, LLC (USA)
  • Relay Therapeutics, Inc. (USA)
Inventor
  • Taylor, Alexander M.
  • Lescarbeau, André
  • Kelley, Elizabeth H.
  • Shortsleeves, Kelley C.
  • Dipietro, Lucian V.
  • Walters, W. Patrick
  • Murcko, Mark Andrew
  • Pierce, Levi Charles Thomas
  • Tang, Yong
  • Giordanetto, Fabrizio
  • Greisman, Jack Benjamin
  • Maragakis, Paul
  • Bhat, Sathesh
  • Dahlgren, Markus Kristofer
  • Therrien, Eric

Abstract

The present disclosure relates to compounds of formula (I) and pharmaceutical compositions thereof and methods for inhibiting the activity of SHP2 phosphatase with the compounds and compositions of the disclosure. The present disclosure further relates to, but is not limited to, methods for treating disorders associated with SHP2 deregulation with the compounds and compositions of the disclosure.

IPC Classes  ?

  • A61K 31/4985 - Pyrazines or piperazines ortho- or peri-condensed with heterocyclic ring systems
  • C07D 487/04 - Ortho-condensed systems
  • C07D 519/00 - Heterocyclic compounds containing more than one system of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring system not provided for in groups or

52.

SHP2 phosphatase inhibitors and methods of use thereof

      
Application Number 16344061
Grant Number 11629145
Status In Force
Filing Date 2017-10-24
First Publication Date 2020-02-27
Grant Date 2023-04-18
Owner
  • D. E. Shaw Research, LLC (USA)
  • Relay Therapeutics, Inc. (USA)
Inventor
  • Giordanetto, Fabrizio
  • Greisman, Jack Benjamin
  • Maragakis, Paul
  • Taylor, Alexander M.
  • Dipietro, Lucian V.
  • Kelley, Elizabeth H.
  • Lescarbeau, André
  • Murcko, Mark Andrew
  • Pierce, Levi Charles Thomas
  • Shortsleeves, Kelley C.
  • Walters, W. Patrick
  • Bhat, Sathesh
  • Therrien, Eric
  • Dahlgren, Markus Kristofer

Abstract

The present invention relates to novel compounds and pharmaceutical compositions thereof, and methods for inhibiting the activity of SHP2 phosphatase with the compounds and compositions of the invention. The present invention further relates to, but is not limited to, methods for treating disorders associated with SHP2 deregulation with the compounds ad compositions of the invention.

IPC Classes  ?

  • C07D 487/04 - Ortho-condensed systems
  • C07D 519/00 - Heterocyclic compounds containing more than one system of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring system not provided for in groups or

53.

Suppressing interaction between bonded particles

      
Application Number 16566041
Grant Number 11264120
Status In Force
Filing Date 2019-09-10
First Publication Date 2020-01-02
Grant Date 2022-03-01
Owner D. E. Shaw Research, LLC (USA)
Inventor
  • Tang, Ping Tak Peter
  • Grossman, J. P.
  • Batson, Brannon
  • Dror, Ron

Abstract

A method for managing flow of particles into an array of pairwise-point-interaction-module includes receiving a first set of particles into a first queue. The first set is a proper subset of a second set of particles that comprises all particles that are to be passed into an array of pairwise-point-interaction-modules during a current time period. Prior to having received all particles from the second set, particles from the first set are allowed to pass from the first queue into the array.

IPC Classes  ?

  • G16C 10/00 - Computational theoretical chemistry, i.e. ICT specially adapted for theoretical aspects of quantum chemistry, molecular mechanics, molecular dynamics or the like
  • G16C 20/90 - Programming languagesComputing architecturesDatabase systemsData warehousing

54.

SHP2 phosphatase inhibitors and methods of use thereof

      
Application Number 16335933
Grant Number 11529347
Status In Force
Filing Date 2017-09-22
First Publication Date 2019-10-10
Grant Date 2022-12-20
Owner
  • Relay Therapeutics, Inc. (USA)
  • D. E. Shaw Research, LLC (USA)
Inventor
  • Albrecht, Brian K.
  • Giordanetto, Fabrizio
  • Greisman, Jack Benjamin
  • Maragakis, Paul
  • Taylor, Alexander M.
  • Walters, W. Patrick

Abstract

The present invention relates to novel compounds having the general formula: and pharmaceutical compositions thereof, and methods for inhibiting the activity of SHP2 phosphatase with the compounds and compositions of the invention. The present invention further relates to, but is not limited to, methods for suppressing tumor cell growth, ameliorating the pathogenesis of systemic lupus erythematosus, and the treatment of various other disorders, including Noonan syndrome, diabetes, neutropenia, neuroblastoma, melanoma, juvenile leukemia, juvenile myelomonocytic leukemia, chronic myelomonocytic leukemia, acute myeloid leukemia, and other cancers associated with SHP2 deregulation with the compounds and compositions of the invention, alone or in combination with other treatments. Other cancers associated with SHP2 deregulation include HER2-positive breast cancer, triple-negative breast cancer, ductal carcinoma of the breast, invasive ductal carcinoma of the breast, non-small cell lung cancer, esophageal cancer, gastric cancer, squamous-cell carcinoma of the head and neck (SCCHN), and colon cancer.

IPC Classes  ?

  • A61K 31/4985 - Pyrazines or piperazines ortho- or peri-condensed with heterocyclic ring systems
  • A61K 31/55 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having seven-membered rings, e.g. azelastine, pentylenetetrazole
  • C07D 487/04 - Ortho-condensed systems
  • C07D 519/00 - Heterocyclic compounds containing more than one system of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring system not provided for in groups or
  • C07D 498/10 - Spiro-condensed systems

55.

PYRAZOLO[3,4-B]PYRAZINE SHP2 PHOSPHATASE INHIBITORS AND METHODS OF USE THEREOF

      
Application Number US2019023386
Publication Number 2019/183364
Status In Force
Filing Date 2019-03-21
Publication Date 2019-09-26
Owner
  • RELAY THERAPEUTICS, INC. (USA)
  • D.E. SHAW RESEARCH, LLC (USA)
Inventor
  • Taylor, Alexander, M.
  • Giordanetto, Fabrizio
  • Greisman, Jack, Benjamin
  • Maragakis, Paul
  • Schoenherr, Heike

Abstract

The present disclosure relates to novel compounds and pharmaceutical compositions thereof, and methods for inhibiting the activity of SHP2 phosphatase with the compounds and compositions of the disclosure. The present disclosure further relates to methods for treating disorders associated with SHP2 deregulation with the compounds and compositions of the disclosure.

IPC Classes  ?

  • C07D 487/04 - Ortho-condensed systems
  • C07D 519/00 - Heterocyclic compounds containing more than one system of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring system not provided for in groups or
  • A61K 31/4985 - Pyrazines or piperazines ortho- or peri-condensed with heterocyclic ring systems
  • A61P 43/00 - Drugs for specific purposes, not provided for in groups
  • A61P 7/00 - Drugs for disorders of the blood or the extracellular fluid
  • A61P 3/10 - Drugs for disorders of the metabolism for glucose homeostasis for hyperglycaemia, e.g. antidiabetics
  • A61P 35/00 - Antineoplastic agents

56.

SHP2 PHOSPHATASE INHIBITORS AND METHODS OF USE THEREOF

      
Application Number US2019023389
Publication Number 2019/183367
Status In Force
Filing Date 2019-03-21
Publication Date 2019-09-26
Owner
  • RELAY THERAPEUTICS, INC. (USA)
  • D.E. SHAW RESEARCH, LLC (USA)
Inventor
  • Taylor, Alexander, M.
  • Lescarbeau, André
  • Kelley, Elizabeth, H.
  • Shortsleeves, Kelley, C.
  • Walters, W., Patrick
  • Murcko, Mark, Andrew
  • Mclean, Thomas, H.
  • Gunaydin, Hakan
  • Giordanetto, Fabrizio
  • Therrien, Eric

Abstract

The present disclosure relates to novel compounds including formula (X) and pharmaceutical compositions thereof, and methods for inhibiting the activity of SHP2 phosphatase with the compounds and compositions of the disclosure. The present disclosure further relates to, but is not limited to, methods for treating disorders associated with SHP2 deregulation with the compounds and compositions of the disclosure.

IPC Classes  ?

  • C07D 401/14 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing three or more hetero rings
  • C07D 405/14 - Heterocyclic compounds containing both one or more hetero rings having oxygen atoms as the only ring hetero atoms, and one or more rings having nitrogen as the only ring hetero atom containing three or more hetero rings
  • C07D 221/20 - Spiro-condensed ring systems
  • C07D 401/04 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings directly linked by a ring-member-to-ring- member bond
  • C07D 401/06 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings linked by a carbon chain containing only aliphatic carbon atoms
  • C07D 401/12 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings linked by a chain containing hetero atoms as chain links
  • C07D 241/18 - Oxygen or sulfur atoms
  • C07D 417/04 - Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group containing two hetero rings directly linked by a ring-member-to-ring- member bond
  • C07D 417/06 - Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group containing two hetero rings linked by a carbon chain containing only aliphatic carbon atoms
  • C07D 471/04 - Ortho-condensed systems
  • C07D 487/04 - Ortho-condensed systems
  • C07D 487/20 - Spiro-condensed systems
  • C07D 491/10 - Spiro-condensed systems
  • C07D 491/107 - Spiro-condensed systems with only one oxygen atom as ring hetero atom in the oxygen-containing ring
  • C07D 491/20 - Spiro-condensed systems

57.

SHP2 PHOSPHATASE INHIBITORS AND METHODS OF USE THEREOF

      
Application Number US2019018960
Publication Number 2019/165073
Status In Force
Filing Date 2019-02-21
Publication Date 2019-08-29
Owner
  • RELAY THERAPEUTICS, INC. (USA)
  • D.E. SHAW RESEARCH, LLC (USA)
Inventor
  • Walters, W., Patrick
  • Lescarbeau, André
  • Kelley, Elizabeth, H.
  • Shortsleeves, Kelley, C.
  • Taylor, Alexander, M.
  • Pierce, Levi Charles, Thomas
  • Murcko, Mark, Andrew
  • Giordanetto, Fabrizio
  • Greisman, Jack, Benjamin
  • Maragakis, Paul
  • Bhat, Sathesh
  • Konze, Kyle
  • Dahlgren, Markus, Kristofer
  • Therrien, Eric

Abstract

The present disclosure relates to novel compounds and pharmaceutical compositions thereof, and methods for inhibiting the activity of SHP2 phosphatase with the compounds and compositions of the disclosure. The present disclosure further relates to, but is not limited to, methods for treating disorders associated with SHP2 deregulation with the compounds and compositions of the disclosure.

IPC Classes  ?

  • C07D 417/04 - Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group containing two hetero rings directly linked by a ring-member-to-ring- member bond
  • C07D 417/12 - Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group containing two hetero rings linked by a chain containing hetero atoms as chain links
  • C07D 417/14 - Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group containing three or more hetero rings
  • C07D 487/04 - Ortho-condensed systems
  • C07D 495/04 - Ortho-condensed systems
  • C07D 498/04 - Ortho-condensed systems
  • C07D 277/56 - Carbon atoms having three bonds to hetero atoms with at the most one bond to halogen
  • C07D 513/04 - Ortho-condensed systems
  • A61K 31/41 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with two or more ring hetero atoms, at least one of which is nitrogen, e.g. tetrazole
  • A61K 31/4188 - 1,3-Diazoles condensed with heterocyclic ring systems, e.g. biotin, sorbinil
  • A61K 31/427 - Thiazoles not condensed and containing further heterocyclic rings
  • A61K 31/519 - PyrimidinesHydrogenated pyrimidines, e.g. trimethoprim ortho- or peri-condensed with heterocyclic rings
  • A61P 35/00 - Antineoplastic agents

58.

PYRAZOLO[3,4-B]PYRAZINE DERIVATIVES AS SHP2 PHOSPHATASE INHIBITORS

      
Application Number US2018053322
Publication Number 2019/067843
Status In Force
Filing Date 2018-09-28
Publication Date 2019-04-04
Owner
  • RELAY THERAPEUTICS, INC. (USA)
  • D.E. SHAW RESEARCH, LLC (USA)
Inventor
  • Taylor, Alexander, M.
  • Walters, W., Patrick
  • Murcko, Mark, Andrew
  • Gordanetto, Fabrizio
  • Therrien, Eric
  • Bhat, Sathesh
  • Dahlgren, Markus, Kristofer

Abstract

Disclosed herein are novel compounds of formula (I) and pharmaceutical compositions thereof, and methods for inhibiting the activity of SHP2 phosphatase with the compounds and compositions of the disclosure. The present disclosure further relates to, but is not limited to, methods for treating disorders associated with SHP2 deregulation with the compounds ad compositions of the disclosure.

IPC Classes  ?

  • C07D 487/04 - Ortho-condensed systems
  • A61P 3/00 - Drugs for disorders of the metabolism
  • A61P 35/00 - Antineoplastic agents
  • A61P 7/00 - Drugs for disorders of the blood or the extracellular fluid
  • A61K 31/4985 - Pyrazines or piperazines ortho- or peri-condensed with heterocyclic ring systems
  • C07D 519/00 - Heterocyclic compounds containing more than one system of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring system not provided for in groups or

59.

Suppressing interaction between bonded particles

      
Application Number 15526846
Grant Number 11139049
Status In Force
Filing Date 2015-11-16
First Publication Date 2019-03-21
Grant Date 2021-10-05
Owner D.E. Shaw Research, LLC (USA)
Inventor
  • Tang, Ping Tak Peter
  • Grossman, J. P.
  • Batson, Brannon
  • Dror, Ron

Abstract

A method comprising causing a simulation machine for molecular dynamic simulation to determine that a topological distance that separates two particles is less than a threshold. The simulation machine includes nodes connected by a network. The nodes collectively representing a volume with each node corresponding to a portion of the simulation space. A topological relationship between the nodes corresponds to spatial relationship thereof in the simulation space. The simulation volume is occupied by particles that interact with each other. The two particles are among these particles. The simulation volume includes node boxes, each of which is handled by one of the nodes. Each of the nodes is implemented as an application specific integrated circuit that includes a combination of first and second hardware elements. The first hardware elements are especially designed to perform pairwise interactions. The second hardware elements operate to provide potentially interacting particles to the first hardware elements.

IPC Classes  ?

  • G16C 10/00 - Computational theoretical chemistry, i.e. ICT specially adapted for theoretical aspects of quantum chemistry, molecular mechanics, molecular dynamics or the like
  • G16C 20/90 - Programming languagesComputing architecturesDatabase systemsData warehousing

60.

COMPOUNDS AS RAS INHIBITORS AND USE THEREOF

      
Application Number US2018050717
Publication Number 2019/055540
Status In Force
Filing Date 2018-09-12
Publication Date 2019-03-21
Owner D.E. SHAW RESEARCH, LLC (USA)
Inventor
  • Shan, Yibing
  • Mysore, Venkat
  • Giordanetto, Fabrizio
  • Wang, Qi

Abstract

A compound of Formula (Ia) or (Ib), or a pharmaceutically acceptable salt thereof is described, wherein the substituents are as defined herein. Pharmaceutical compositions comprising the same and method of using the same are also described.

IPC Classes  ?

  • A61K 31/4152 - 1,2-Diazoles having oxo groups directly attached to the heterocyclic ring, e.g. antipyrine, phenylbutazone, sulfinpyrazone
  • C07D 231/08 - Heterocyclic compounds containing 1,2-diazole or hydrogenated 1,2-diazole rings not condensed with other rings having one double bond between ring members or between a ring member and a non-ring member with oxygen or sulfur atoms directly attached to ring carbon atoms

61.

PYRAZOLO[3,4-B]PYRAZINE DERIVATIVES AS SHP2 PHOSPHATASE INHIBITORS

      
Application Number US2018034614
Publication Number 2018/218133
Status In Force
Filing Date 2018-05-25
Publication Date 2018-11-29
Owner
  • RELAY THERAPEUTICS, INC. (USA)
  • D.E. SHAW RESEARCH, LLC (USA)
Inventor
  • Taylor, Alexander M.
  • Lescarbeau, André
  • Kelley, Elizabeth H.
  • Shortsleeves, Kelley C.
  • Dipietro, Lucian V.
  • Walters, W. Patrick
  • Murcko, Mark Andrew
  • Pierce, Levi Charles Thomas
  • Tang, Yong
  • Giordanetto, Fabrizio
  • Greisman, Jack Benjamin
  • Maragakis, Paul
  • Bhat, Sathesh
  • Dahlgeren, Markus Kristofer
  • Therrien, Eric

Abstract

The present disclosure relates to compounds of formula (I) and pharmaceutical compositions thereof, and methods for inhibiting the activity of SHP2 phosphatase with the compounds and compositions of the disclosure. The present disclosure further relates to, but is not limited to, methods for treating disorders associated with SHP2 deregulation with the compounds and compositions of the disclosure

IPC Classes  ?

  • C07D 487/04 - Ortho-condensed systems
  • C07D 519/00 - Heterocyclic compounds containing more than one system of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring system not provided for in groups or
  • A61K 31/4985 - Pyrazines or piperazines ortho- or peri-condensed with heterocyclic ring systems
  • A61P 35/00 - Antineoplastic agents
  • A61P 3/00 - Drugs for disorders of the metabolism
  • A61P 7/00 - Drugs for disorders of the blood or the extracellular fluid

62.

PYRAZOLO[3,4-B]PYRAZINE DERIVATIVES AS SHP2 PHOSPHATASE INHIBITORS

      
Application Number US2017058048
Publication Number 2018/081091
Status In Force
Filing Date 2017-10-24
Publication Date 2018-05-03
Owner
  • RELAY THERAPEUTICS, INC. (USA)
  • D.E. SHAW RESEARCH, LLC (USA)
Inventor
  • Giordanetto, Fabrizio
  • Greisman, Jack, Benjamin
  • Maragakis, Paul
  • Taylor, Alexander, M.
  • Dipietro, Lucian, V.
  • Kelley, Elizabeth, H.
  • Lescarbeau, André
  • Murcko, Mark, Andrew
  • Pierce, Levi Charles, Thomas
  • Shortsleeves, Kelley, C.
  • Walters, W., Patrick
  • Bhat, Sathesh
  • Therrien, Eric
  • Dahlgren, Markus, Kristofer

Abstract

The present invention relates to novel compounds and pharmaceutical compositions thereof, and methods for inhibiting the activity of SHP2 phosphatase with the compounds and compositions of the invention. The present invention further relates to, but is not limited to, methods for treating disorders associated with SHP2 deregulation with the compounds ad compositions of the invention.

IPC Classes  ?

  • C07D 471/04 - Ortho-condensed systems
  • C07D 487/04 - Ortho-condensed systems
  • C07D 491/10 - Spiro-condensed systems
  • C07D 519/00 - Heterocyclic compounds containing more than one system of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring system not provided for in groups or
  • A61K 31/4985 - Pyrazines or piperazines ortho- or peri-condensed with heterocyclic ring systems
  • A61P 35/00 - Antineoplastic agents
  • A61P 3/00 - Drugs for disorders of the metabolism
  • A61P 7/00 - Drugs for disorders of the blood or the extracellular fluid

63.

SHP2 PHOSPHATASE INHIBITORS AND METHODS OF USE THEREOF

      
Application Number US2017052950
Publication Number 2018/057884
Status In Force
Filing Date 2017-09-22
Publication Date 2018-03-29
Owner
  • RELAY THERAPEUTICS, INC. (USA)
  • D.E. SHAW RESEARCH, LLC (USA)
Inventor
  • Albrecht, Brian K.
  • Giordanetto, Fabrizio
  • Greisman, Jack, Benjamin
  • Maragakis, Paul
  • Taylor, Alexander M.
  • Walters, W. Patrick

Abstract

The present invention relates to novel compounds and pharmaceutical compositions thereof, and methods for inhibiting the activity of SHP2 phosphatase with the compounds and compositions of the invention. The present invention further relates to, but is not limited to, methods for suppressing tumor cell growth, ameliorating the pathogenesis of systemic lupus erythematosus, and the treatment of various other disorders, including Noonan syndrome, diabetes, neutropenia, neuroblastoma, melanoma, juvenile leukemia, juvenile myelomonocytic leukemia, chronic myelomonocytic leukemia, acute myeloid leukemia, and other cancers associated with SHP2 deregulation with the compounds and compositions of the invention, alone or in combination with other treatments. Other cancers associated with SHP2 deregulation include HER2-positive breast cancer, triple-negative breast cancer, ductal carcinoma of the breast, invasive ductal carcinoma of the breast, non-small cell lung cancer, esophageal cancer, gastric cancer, squamous-cell carcinoma of the head and neck (SCCHN), and colon cancer.

IPC Classes  ?

  • C07D 487/04 - Ortho-condensed systems
  • A61K 31/4985 - Pyrazines or piperazines ortho- or peri-condensed with heterocyclic ring systems
  • A61K 31/55 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having seven-membered rings, e.g. azelastine, pentylenetetrazole
  • C07D 498/10 - Spiro-condensed systems
  • A61P 9/00 - Drugs for disorders of the cardiovascular system
  • A61P 35/00 - Antineoplastic agents

64.

METHOD OF TREATING NEURODEGENERATIVE DISORDERS BY RESCUING ALPHA-SYNUCLEIN TOXICITY

      
Application Number US2016066687
Publication Number 2017/106367
Status In Force
Filing Date 2016-12-14
Publication Date 2017-06-22
Owner
  • D.E. SHAW RESEARCH, LLC (USA)
  • WHITEHEAD INSTITUTE FOR BIOMEDICAL RESEARCH (USA)
Inventor
  • Shan, Yibing
  • Mysore, Venkat
  • Lindquist, Susan
  • Tardiff, Dan
  • Chandramouli, Srividya

Abstract

A method for treating neurodegenerative disease in a subject in need thereof by administering to the subject an effective amount of a Nedd4 activator as described herein.

IPC Classes  ?

  • A61K 31/53 - Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with three nitrogens as the only ring hetero atoms, e.g. chlorazanil, melamine
  • C07D 251/40 - Nitrogen atoms

65.

Methods for screening voltage-gated proteins

      
Application Number 15295436
Grant Number 10739354
Status In Force
Filing Date 2016-10-17
First Publication Date 2017-04-27
Grant Date 2020-08-11
Owner D.E. SHAW RESEARCH, LLC (USA)
Inventor
  • Jensen, Morten Østergaard
  • Borhani, David Wayne
  • Jogini, Vishwanath

Abstract

In one aspect, the invention relates to a method for identifying a compound which modulates the activity of a voltage-gated protein. In certain embodiments, the voltage gate protein is a voltage-gated ion channel. In certain embodiments, the voltage-gated protein is a voltage sensitive phosphatase. In certain embodiments, the voltage-gated protein used in conjunction with the methods of the invention is modified to altered permeability or voltage sensitivity.

IPC Classes  ?

  • G01N 33/53 - ImmunoassayBiospecific binding assayMaterials therefor
  • G01N 33/68 - Chemical analysis of biological material, e.g. blood, urineTesting involving biospecific ligand binding methodsImmunological testing involving proteins, peptides or amino acids
  • C12Q 1/42 - Measuring or testing processes involving enzymes, nucleic acids or microorganismsCompositions thereforProcesses of preparing such compositions involving hydrolase involving phosphatase
  • G01N 33/487 - Physical analysis of biological material of liquid biological material

66.

SUPPRESSING INTERACTION BETWEEN BONDED PARTICLES

      
Application Number US2015060863
Publication Number 2016/077823
Status In Force
Filing Date 2015-11-16
Publication Date 2016-05-19
Owner D. E. SHAW RESEARCH, LLC (USA)
Inventor
  • Tang, Ping Tak Peter
  • Grossman, J P
  • Batson, Brannon
  • Dror, Ron

Abstract

A method comprising causing a computer to determine that a topological distance between two particles is less than a threshold.

IPC Classes  ?

  • G06F 19/00 - Digital computing or data processing equipment or methods, specially adapted for specific applications (specially adapted for specific functions G06F 17/00;data processing systems or methods specially adapted for administrative, commercial, financial, managerial, supervisory or forecasting purposes G06Q;healthcare informatics G16H)

67.

Inverse weighted arbitration

      
Application Number 14739177
Grant Number 09906467
Status In Force
Filing Date 2015-06-15
First Publication Date 2015-12-17
Grant Date 2018-02-27
Owner D.E. Shaw Research, LLC (USA)
Inventor
  • Grossman, J. P.
  • Towles, Brian Patrick

Abstract

A data communication apparatus includes a router, first and second packet producers, and a penalizer. The router is directly connected to the first and second producers. The penalizer assesses penalties against each producer whenever that producer is serviced. The penalty value depends at least in part on an expected extent to which the first producer requires service. The penalizer then accumulates penalties against each producer.

IPC Classes  ?

  • H04L 12/933 - Switch core, e.g. crossbar, shared memory or shared medium
  • H04L 12/801 - Flow control or congestion control

68.

ATOMIC MODEL FOR JANUS KINASE-2 (JAK2) AND USES THEREOF

      
Application Number US2015011892
Publication Number 2015/109275
Status In Force
Filing Date 2015-01-19
Publication Date 2015-07-23
Owner
  • NEW YORK UNIVERSITY (USA)
  • D.E. SHAW RESEARCH, LLC (USA)
Inventor
  • Hubbard, Stevan
  • Gnanasambandan, Kavitha
  • Shan, Yibing

Abstract

Atomic or molecular models of the autoinhibitory interaction between JAK domains are provided along with methods using the atomic models for identifying agents that restore the autoinhibitory interaction between JAK domains.

IPC Classes  ?

  • G01N 33/68 - Chemical analysis of biological material, e.g. blood, urineTesting involving biospecific ligand binding methodsImmunological testing involving proteins, peptides or amino acids

69.

Methods for screening voltage-gated proteins

      
Application Number 14473386
Grant Number 10753947
Status In Force
Filing Date 2014-08-29
First Publication Date 2015-03-26
Grant Date 2020-08-25
Owner D.E. SHAW RESEARCH, LLC (USA)
Inventor
  • Jensen, Morten Østergaard
  • Borhani, David Wayne
  • Jogini, Vishwanath

Abstract

In one aspect, the invention relates to a method for identifying a compound which modulates the activity of a voltage-gated protein. In certain embodiments, the voltage gate protein is a voltage-gated ion channel. In certain embodiments, the voltage-gated protein is a voltage sensitive phosphatase. In certain embodiments, the voltage-gated protein used in conjunction with the methods of the invention is modified to altered permeability or voltage sensitivity.

IPC Classes  ?

  • G01N 33/53 - ImmunoassayBiospecific binding assayMaterials therefor
  • G01N 33/68 - Chemical analysis of biological material, e.g. blood, urineTesting involving biospecific ligand binding methodsImmunological testing involving proteins, peptides or amino acids
  • C12Q 1/42 - Measuring or testing processes involving enzymes, nucleic acids or microorganismsCompositions thereforProcesses of preparing such compositions involving hydrolase involving phosphatase
  • G01N 33/487 - Physical analysis of biological material of liquid biological material

70.

Event-driven computation

      
Application Number 14211294
Grant Number 09384047
Status In Force
Filing Date 2014-03-14
First Publication Date 2014-09-18
Grant Date 2016-07-05
Owner D.E. Shaw Research, LLC (USA)
Inventor
  • Grossman, J. P.
  • Kuskin, Jeffrey S.

Abstract

An apparatus for high-performance parallel computation, includes plural computation nodes, each having dispatch units, memories in communication with the dispatch units, and processors, each of which is in communication with the memories and the dispatch units. Each dispatch unit is configured to recognize, as ready for execution, one or more computational tasks that have become ready for execution as a result of counted remote writes into the memories. Each of the dispatch units is configured to receive a dispatch request from a processor and to determine whether there exist one or more computational tasks that are both ready and available for execution by the processor.

IPC Classes  ?

  • G06F 9/46 - Multiprogramming arrangements
  • G06F 9/48 - Program initiatingProgram switching, e.g. by interrupt

71.

METHODS FOR SCREENING VOLTAGE GATED PROTEINS

      
Application Number US2013028324
Publication Number 2013/130808
Status In Force
Filing Date 2013-02-28
Publication Date 2013-09-06
Owner
  • D.E. SHAW RESEARCH, LLC (USA)
  • D.E. SHAW RESEARCH INDIA TECHNOLOGY PRIVATE LIMITED (India)
Inventor
  • Jensen, Morten, Ostergaard
  • Borhani, David
  • Jogini, Vishwanath

Abstract

In one aspect, the invention relates to a method for identifying a compound which modulates the activity of a voltage-gated protein. In certain embodiments, the voltage gate protein is a voltage gated ion channel. In certain embodiments, the voltage gated protein is a voltage sensitive phosphatase. In certain embodiments, the voltage gated protein used in conjunction with the methods of the invention is modified to altered permeability or voltage sensitivity.

IPC Classes  ?

  • G01N 33/53 - ImmunoassayBiospecific binding assayMaterials therefor

72.

Parallel processing system for computing particle interactions

      
Application Number 13756998
Grant Number 09612832
Status In Force
Filing Date 2013-02-01
First Publication Date 2013-07-04
Grant Date 2017-04-04
Owner D.E. Shaw Research LLC (USA)
Inventor
  • Shaw, David E.
  • Deneroff, Martin M.
  • Dror, Ron O.
  • Larson, Richard H.
  • Salmon, John K.

Abstract

A parallel processing system for computing particle interactions includes a plurality of computation nodes arranged according to a geometric partitioning of a simulation volume. Each computation node has storage for particle data. This particle data is associated with particles in a region of the geometrically partitioned simulation volume. The parallel processing system also includes a communication system having links interconnecting the computation nodes. Each of the computation nodes includes a processor subsystem. These processor subsystems cooperate to coordinate computation of the particle interactions in a distributed manner.

IPC Classes  ?

  • G06F 7/60 - Methods or arrangements for performing computations using a digital non-denominational number representation, i.e. number representation without radixComputing devices using combinations of denominational and non-denominational quantity representations
  • G06F 9/30 - Arrangements for executing machine instructions, e.g. instruction decode
  • G06F 19/00 - Digital computing or data processing equipment or methods, specially adapted for specific applications (specially adapted for specific functions G06F 17/00;data processing systems or methods specially adapted for administrative, commercial, financial, managerial, supervisory or forecasting purposes G06Q;healthcare informatics G16H)
  • G06F 15/76 - Architectures of general purpose stored program computers
  • G06F 19/16 - for molecular structure, e.g. structure alignment, structural or functional relations, protein folding, domain topologies, drug targeting using structure data, involving two-dimensional or three-dimensional structures

73.

Parallel computer architecture for computation of particle interactions

      
Application Number 13680962
Grant Number 09747099
Status In Force
Filing Date 2012-11-19
First Publication Date 2013-04-11
Grant Date 2017-08-29
Owner D.E. Shaw Research LLC (USA)
Inventor
  • Shaw, David E.
  • Deneroff, Martin M.
  • Dror, Ron O.
  • Larson, Richard H.
  • Salmon, John K.

Abstract

A computation system for computing interactions in a multiple-body simulation includes an array of processing modules arranged into one or more serially interconnected processing groups of the processing modules. Each of the processing modules includes storage for data elements and includes circuitry for performing pairwise computations between data elements each associated with a spatial location. Each of the pairwise computations makes use of a data element from the storage of the processing module and a data element passing through the serially interconnected processing modules. Each of the processing modules includes circuitry for selecting the pairs of data elements according to separations between spatial locations associated with the data elements.

IPC Classes  ?

  • G06F 17/10 - Complex mathematical operations
  • G06F 9/30 - Arrangements for executing machine instructions, e.g. instruction decode
  • G06F 19/00 - Digital computing or data processing equipment or methods, specially adapted for specific applications (specially adapted for specific functions G06F 17/00;data processing systems or methods specially adapted for administrative, commercial, financial, managerial, supervisory or forecasting purposes G06Q;healthcare informatics G16H)
  • G06F 15/76 - Architectures of general purpose stored program computers
  • G06F 19/16 - for molecular structure, e.g. structure alignment, structural or functional relations, protein folding, domain topologies, drug targeting using structure data, involving two-dimensional or three-dimensional structures

74.

Zonal methods for computation of particle interactions

      
Application Number 13329852
Grant Number 10824422
Status In Force
Filing Date 2011-12-19
First Publication Date 2012-05-10
Grant Date 2020-11-03
Owner D.E. Shaw Research, LLC (USA)
Inventor
  • Bowers, Kevin J.
  • Dror, Ron
  • Shaw, David

Abstract

A method for performing computations associated with bodies located in a computation region includes, for each subset of multiple subsets of the computations, performing the computations in that subset of computations, including accepting data of bodies located in each of a plurality of import regions associated with the subset of the computations, the import regions being parts of the computation region; for each combination of a predetermined plurality of combinations of multiple of the import regions, performing computations associated with sets of bodies, wherein for each of the sets of bodies, at least one body of the set is located in each import region of the combination.

IPC Classes  ?

  • G06F 17/10 - Complex mathematical operations
  • G06F 9/30 - Arrangements for executing machine instructions, e.g. instruction decode
  • G16C 10/00 - Computational theoretical chemistry, i.e. ICT specially adapted for theoretical aspects of quantum chemistry, molecular mechanics, molecular dynamics or the like
  • G06F 15/76 - Architectures of general purpose stored program computers
  • G16B 15/00 - ICT specially adapted for analysing two-dimensional or three-dimensional molecular structures, e.g. structural or functional relations or structure alignment

75.

Selection-based criteria for computation of multiple body interactions

      
Application Number 12775847
Grant Number 08160852
Status In Force
Filing Date 2010-05-07
First Publication Date 2010-11-04
Grant Date 2012-04-17
Owner D. E. Shaw Research LLC (USA)
Inventor Bowers, Kevin J.

Abstract

Distributed computation of multiple body interactions in a region uses multiple processing modules, where each of the processing modules is associated with a respective corresponding portion of the region. In some examples, the approach includes establishing multiple coordinate frames of reference, each processing module corresponding to one the coordinate frames of reference. In some examples, efficient techniques are used for selecting elements for computation of interactions according at least in part to a separation-based criterion.

IPC Classes  ?

  • G06G 7/48 - Analogue computers for specific processes, systems, or devices, e.g. simulators

76.

Link and physical coding sub-layer protocols

      
Application Number 12699959
Grant Number 09031241
Status In Force
Filing Date 2010-02-04
First Publication Date 2010-08-05
Grant Date 2015-05-12
Owner D.E. Shaw Research, LLC (USA)
Inventor
  • Nociolo, Larry
  • Towles, Brian Patrick

Abstract

An approach to data communication makes use of a protocol for encoding data on a serial link that provides both a run length limiting function and a frame marking function, while minimizing communication overhead over the data bearing portions of the signal, and while limiting latency introduced into the communication. In some examples, a single bit is added as a frame marker in such a way that a single bit frame marker also limits run length.

IPC Classes  ?

77.

Routing with virtual channels

      
Application Number 12190210
Grant Number 07809006
Status In Force
Filing Date 2008-08-12
First Publication Date 2009-02-19
Grant Date 2010-10-05
Owner D. E. Shaw Research, LLC (USA)
Inventor Towles, Brian Patrick

Abstract

An approach to introducing adaptive routing into a communication approach for passing messages between nodes over links between the nodes includes forming virtual channels over the links of the system and defining a deterministic routing function over the virtual channels such that the deterministic routing function is deadlock free. Adaptive routing is then permitted at nodes using the existing virtual channels by introducing a constraint on the available virtual channels used to forward communication that arrives at a node for a particular destination. The constraint on the virtual channels is such that the adaptive system is also deadlock free.

IPC Classes  ?

  • H04L 12/28 - Data switching networks characterised by path configuration, e.g. LAN [Local Area Networks] or WAN [Wide Area Networks]
  • H04L 12/56 - Packet switching systems

78.

Determining computational units for computing multiple body interactions

      
Application Number 11975694
Grant Number 08126956
Status In Force
Filing Date 2007-10-19
First Publication Date 2008-10-02
Grant Date 2012-02-28
Owner D.E. Shaw Research LLC (USA)
Inventor
  • Bowers, Kevin J.
  • Dror, Ron O
  • Shaw, David E.

Abstract

A computer-implemented method for determining computational units for computing interactions among sets of bodies located in a computation region includes, for each computation associated with one of the sets of bodies, determining, according to an assignment rule that provides a mapping from a location of each of the bodies to a determined computation unit from the plurality of computation units, a computation unit from a plurality of computation units for performing the computation.

IPC Classes  ?

  • G06F 15/16 - Combinations of two or more digital computers each having at least an arithmetic unit, a program unit and a register, e.g. for a simultaneous processing of several programs
  • G06F 7/60 - Methods or arrangements for performing computations using a digital non-denominational number representation, i.e. number representation without radixComputing devices using combinations of denominational and non-denominational quantity representations
  • G06G 7/48 - Analogue computers for specific processes, systems, or devices, e.g. simulators

79.

COMPUTATION OF MULTIPLE BODY INTERACTIONS

      
Application Number US2008057853
Publication Number 2008/118789
Status In Force
Filing Date 2008-03-21
Publication Date 2008-10-02
Owner D. E. Shaw Research, LLC (USA)
Inventor Bowers, Kevin J.

Abstract

Distributed computation of multiple body interactions in a region uses multiple processing modules, where each of the processing modules is associated with a respective corresponding portion of the region. In some examples, the approach includes establishing multiple coordinate frames of reference, each processing module corresponding to one the coordinate frames of reference. In some examples, efficient techniques are used for selecting elements for computation of interactions according at least in part to a separation-based criterion.

IPC Classes  ?

  • G06F 19/00 - Digital computing or data processing equipment or methods, specially adapted for specific applications (specially adapted for specific functions G06F 17/00;data processing systems or methods specially adapted for administrative, commercial, financial, managerial, supervisory or forecasting purposes G06Q;healthcare informatics G16H)

80.

Distributed computation of multiple-body interactions using local-coordinate reference frames

      
Application Number 12053170
Grant Number 08918305
Status In Force
Filing Date 2008-03-21
First Publication Date 2008-09-25
Grant Date 2014-12-23
Owner D.E. Shaw Research, LLC (USA)
Inventor Bowers, Kevin J.

Abstract

Distributed computation of multiple body interactions in a region uses multiple processing modules, where each of the processing modules is associated with a respective corresponding portion of the region. In some examples, the approach includes establishing multiple coordinate frames of reference, each processing module corresponding to one the coordinate frames of reference. In some examples, efficient techniques are used for selecting elements for computation of interactions according at least in part to a separation-based criterion.

IPC Classes  ?

  • G06G 7/48 - Analogue computers for specific processes, systems, or devices, e.g. simulators
  • G06F 19/00 - Digital computing or data processing equipment or methods, specially adapted for specific applications (specially adapted for specific functions G06F 17/00;data processing systems or methods specially adapted for administrative, commercial, financial, managerial, supervisory or forecasting purposes G06Q;healthcare informatics G16H)
  • G06F 17/50 - Computer-aided design
  • G06T 17/20 - Wire-frame description, e.g. polygonalisation or tessellation

81.

Numerical techniques for dynamics simulation

      
Application Number 11865298
Grant Number 07809535
Status In Force
Filing Date 2007-10-01
First Publication Date 2008-04-03
Grant Date 2010-10-05
Owner D. E. Shaw Research, LLC (USA)
Inventor Bowers, Kevin J.

Abstract

A method for dynamics simulation involves maintaining quantities according to a floating point binary format quantized to a first precision lower than the precision supported by the floating point format. For example, although an IEEE floating point number can represent numbers with a precision of one part in 2^24, the quantities are quantized to a lower precision, such as one part in 2^22. Operations are applied to sets of the quantities by quantizing the intermediate results of the operations to the lower precision than the precision supported by the floating point format.

IPC Classes  ?

  • G06F 17/50 - Computer-aided design
  • G06G 7/48 - Analogue computers for specific processes, systems, or devices, e.g. simulators

82.

Iterative exchange communication

      
Application Number 11865322
Grant Number 08473966
Status In Force
Filing Date 2007-10-01
First Publication Date 2008-04-03
Grant Date 2013-06-25
Owner D.E. Shaw Research, LLC (USA)
Inventor Chow, Edmond

Abstract

An inter-processor communication approach is applicable to a message passing pattern called iterative exchange. In such patterns, two processors exchange messages, then perform a computation, and then this process is repeated. If two sets of send and receive buffers are used, then it is possible to guarantee that a receive buffer on the receiver's side is always available to receive the message. A message passing system controls which buffers are used for sending and receiving. These buffers are registered beforehand, thereby avoiding repeated registration at the time messages are sent. The sender is initially informed of all the possible receive buffers that the receiver will use, and the sender then uses these receive buffers alternately. Examples of this approach can avoid the use of multiple-step rendezvous protocols, memory copies, and memory registrations when a message needs to be sent.

IPC Classes  ?

  • G06F 3/00 - Input arrangements for transferring data to be processed into a form capable of being handled by the computerOutput arrangements for transferring data from processing unit to output unit, e.g. interface arrangements
  • G06F 9/44 - Arrangements for executing specific programs
  • G06F 9/46 - Multiprogramming arrangements
  • G06F 13/00 - Interconnection of, or transfer of information or other signals between, memories, input/output devices or central processing units

83.

Constraint stabilization

      
Application Number 11865262
Grant Number 07769571
Status In Force
Filing Date 2007-10-01
First Publication Date 2008-04-03
Grant Date 2010-08-03
Owner D. E. Shaw Research, LLC (USA)
Inventor Bowers, Kevin J.

Abstract

An improved constraint approach reduces the energy drift rate to acceptable levels. In an embodiment of this approach, massively parallel constrained velocity Verlet NVE (constant particle number, constant volume, constant energy) MD simulations can be run using single precision arithmetic with very low energy drift (e.g., ˜1 Kelvin per microsecond simulated time) using large timesteps (e.g., 2.5 fs) for typical systems and MD force fields.

IPC Classes  ?

  • G06F 17/50 - Computer-aided design
  • G06G 7/48 - Analogue computers for specific processes, systems, or devices, e.g. simulators

84.

PARALLEL COMPUTER ARCHITECTURE FOR COMPUTATION OF PARTICLE INTERACTIONS

      
Application Number US2006032498
Publication Number 2007/022469
Status In Force
Filing Date 2006-08-18
Publication Date 2007-02-22
Owner D.E. SHAW RESEARCH, LLC (USA)
Inventor
  • Deneroff, Martin, M.
  • Dror, Ron
  • Bowers, Kevin, J.

Abstract

An architecture for computation of particle interactions makes use various forms of parallelism. In one implementation, the parallelism involves using multiple computation nodes arranged according to a geometric partitioning of a simulation volume. These computation nodes together, in a distributed manner, coordinate computation of the particle interactions. Nodes each include a group of subsystems, including a processor subsystem, a computation subsystem, and a memory subsystem, as well as a communication subsystem linking the subsystems of the group of subsystems and providing at least part of a link between subsystems of the node and subsystems of other processing nodes of the processing system. The computation system includes an array of processing modules arranged into one or more serially interconnected processing groups of the processing modules. Each of the processing module includes a storage for data elements and includes circuitry for performing pairwise computations between data elements, each of the pairwise computations making use a data element from the storage of the processing module and a data element passing through the serially interconnected processing modules.

IPC Classes  ?

  • G06F 15/173 - Interprocessor communication using an interconnection network, e.g. matrix, shuffle, pyramid, star or snowflake

85.

SCALABLE METHOD FOR THE EVALUATION OF DISTANCE-LIMITED PAIRWISE PARTICLE INTERACTIONS

      
Application Number US2006014782
Publication Number 2006/113825
Status In Force
Filing Date 2006-04-19
Publication Date 2006-10-26
Owner D.E. SHAW RESEARCH, LLC (USA)
Inventor
  • Bowers, Kevin J.
  • Dror, Ron
  • Shaw, David E.

Abstract

A generalized approach to particle interaction can confer advantages over previously described method in terms of one or more of communications bandwidth and latency and memory access characteristics. These generalizations can involve one or more of at least spatial decomposition, import region rounding, and multiple zone communication scheduling. In a parallel implementation, the generalized approach can have the advantage that the communication bandwidth required by several instances of the approach come close or achieve an approximate lower bound for communication bandwidth. In a serial processing implementation, effective cache utilization can substantially reduce memory latency in processing.

IPC Classes  ?

86.

Grid based computation for multiple body simulation.

      
Application Number 11171634
Grant Number 07526415
Status In Force
Filing Date 2005-06-30
First Publication Date 2006-06-29
Grant Date 2009-04-28
Owner D. E. Shaw Research, LLC (USA)
Inventor
  • Shan, Yibing
  • Klepeis, John
  • Eastwood, Michael
  • Dror, Ron
  • Shaw, David E.

Abstract

A method and a corresponding software and a system for processing a charge distribution according to a spreading function and a predefined operation are described.

IPC Classes  ?

  • G06F 7/60 - Methods or arrangements for performing computations using a digital non-denominational number representation, i.e. number representation without radixComputing devices using combinations of denominational and non-denominational quantity representations