Ginkgo BioWorks, Inc.

United States of America

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C12N 9/10 - Transferases (2.) 58
C12N 15/52 - Genes encoding for enzymes or proenzymes 52
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42 - Scientific, technological and industrial services, research and design 49
44 - Medical, veterinary, hygienic and cosmetic services; agriculture, horticulture and forestry services 32
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1.

SCALABLE, MOBILE, AND RECONFIGURABLE MODULES FOR PROCESSING BIOLOGICAL AND CHEMICAL MATERIALS

      
Application Number 19213714
Status Pending
Filing Date 2025-05-20
First Publication Date 2025-11-13
Owner Ginkgo Bioworks, Inc. (USA)
Inventor
  • Davey, Jay S.
  • Myers, Matthew Jonathan
  • Serber, William
  • Khullar, Aneesh
  • Bremner, Christopher James
  • Mcloughlin, David J.

Abstract

Disclosed are apparatuses, systems, and methods for processing materials, including biological or chemical materials. A manufacturing module may include a work station configured to perform a process involving equipment capable of use with biological or chemical material, a first transportation segment that is configured to connect and disconnect with a second transportation segment such that when connected, a carrier of the biological or chemical material can be transported from the first transportation segment to the second transportation segment, a pick and place robot configured to move an element between the first transportation segment and the work station; and a movement mechanism configured to allow the work station, the first transportation segment, and the pick and place robot to be moved as a single unit. A system may include a plurality of manufacturing modules that are reconfigurable to a plurality of configurations.

IPC Classes  ?

  • G01N 35/04 - Details of the conveyor system
  • B65G 61/00 - Use of pick-up or transfer devices or of manipulators for stacking or de-stacking articles not otherwise provided for
  • G01N 35/00 - Automatic analysis not limited to methods or materials provided for in any single one of groups Handling materials therefor

2.

REGULATORY SEQUENCES

      
Application Number US2025024902
Publication Number 2025/221850
Status In Force
Filing Date 2025-04-16
Publication Date 2025-10-23
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Flynn, Elise, Duboscq
  • Garipler, Görkem
  • Laserson, Uri
  • Morrow, Alyssa

Abstract

The present disclosure provides modular regulatory elements useful for transcription and gene expression.

IPC Classes  ?

  • C12N 15/113 - Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides
  • C12N 15/86 - Viral vectors

3.

ENGINEERED PHENYLALANINE AMMONIA LYASE AND TYROSINE AMMONIA LYASE ENZYMES FOR PRODUCING AROMATIC COMPOUNDS

      
Application Number 18868926
Status Pending
Filing Date 2023-05-25
First Publication Date 2025-10-23
Owner Ginkgo Bioworks, Inc. (USA)
Inventor
  • Parachin, Nadia
  • Praveschotinunt, Pichet
  • Schmidt, Nathan W.

Abstract

Aspects of the disclosure relate to aromatic amino acid ammonia lyases (ALs), phenylalanine ammonia lyases (PALs), and tyrosine ammonia lyase (TALs), including engineered enzymes, and their use in catalyzing chemical reactions.

IPC Classes  ?

  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes
  • C12N 1/18 - Baker's yeastBrewer's yeast
  • C12N 1/20 - BacteriaCulture media therefor
  • C12N 9/02 - Oxidoreductases (1.), e.g. luciferase
  • C12N 9/88 - Lyases (4.)
  • C12P 7/42 - Hydroxy carboxylic acids
  • C12R 1/19 - Escherichia coli
  • C12R 1/84 - Pichia
  • C12R 1/865 - Saccharomyces cerevisiae

4.

CHIMERIC ANTIGEN RECEPTORS AND USES THEREOF

      
Application Number US2025025149
Publication Number 2025/221989
Status In Force
Filing Date 2025-04-17
Publication Date 2025-10-23
Owner
  • GINKGO BIOWORKS, INC. (USA)
  • WISCONSIN ALUMNI RESEARCH FOUNDATION (USA)
Inventor
  • Kyung, Taeyoon
  • Mace, Joshua
  • Eshghi, Shawdee
  • Zhao, Siqi

Abstract

The present disclosure provides chimeric antigen receptors comprising novel intracellular domain pairs. It further provides cells expressing such chimeric antigen receptors, compositions of cells expressing such chimeric antigen receptors, as well as methods of making and using the same.

IPC Classes  ?

  • A61K 40/31 - Chimeric antigen receptors [CAR]
  • A61K 40/11 - T-cells, e.g. tumour infiltrating lymphocytes [TIL] or regulatory T [Treg] cellsLymphokine-activated killer [LAK] cells
  • A61K 40/42 - Cancer antigens
  • A61P 35/00 - Antineoplastic agents
  • C07K 14/725 - T-cell receptors
  • C07K 16/30 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants from tumour cells
  • C12N 5/0783 - T cellsNK cellsProgenitors of T or NK cells

5.

NOVEL INTRON SEQUENCES FOR CIRCULARIZING RNA MOLECULES

      
Application Number US2025025308
Publication Number 2025/222086
Status In Force
Filing Date 2025-04-18
Publication Date 2025-10-23
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Sherman, Mark
  • Harnett, Dermot
  • Scheidegger, Adam

Abstract

In certain aspects, the present disclosure provides nucleic acid molecules containing an intron pair for production of linear and/or circularized nucleic acid molecules, as well as methods of preparation and methods of use.

IPC Classes  ?

  • C12N 15/113 - Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides
  • C12N 15/63 - Introduction of foreign genetic material using vectorsVectorsUse of hosts thereforRegulation of expression

6.

BIOSYNTHESIS OF BETALAINS

      
Application Number US2025018915
Publication Number 2025/189098
Status In Force
Filing Date 2025-03-07
Publication Date 2025-09-11
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Becker, Marco, Valentim
  • Da Costa, Bernardo, Moura Torres
  • Hicks, Allison, Lee
  • Mansour, Wissam
  • Polturak, Guy
  • Prell, Carina, Saskia
  • Ranson, Hilary, Joan Grant
  • Tresnak, Daniel, Thomas
  • Walsh, Robert, James
  • Wasinger, Sarah, Renae
  • Zeltzer, Tal
  • Amarnath, Kapil
  • Dash, Satyakam
  • Jenior, Matthew

Abstract

Aspects of the disclosure relate to tyrosine hydroxylases, including engineered enzymes, and their use in catalyzing chemical reactions to produce betalain. Additional aspects of the disclosure relate to genetic modifications of host cells to improve betalain production.

IPC Classes  ?

  • C12N 9/02 - Oxidoreductases (1.), e.g. luciferase
  • C12N 15/81 - Vectors or expression systems specially adapted for eukaryotic hosts for fungi for yeasts
  • C12N 15/82 - Vectors or expression systems specially adapted for eukaryotic hosts for plant cells
  • C12P 17/12 - Nitrogen as only ring hetero atom containing a six-membered hetero ring
  • C12P 17/16 - Preparation of heterocyclic carbon compounds with only O, N, S, Se, or Te as ring hetero atoms containing two or more hetero rings
  • C12P 19/60 - Preparation of O-glycosides, e.g. glucosides having an oxygen of the saccharide radical directly bound to a non-saccharide heterocyclic ring or a condensed ring system containing a non-saccharide heterocyclic ring, e.g. coumermycin, novobiocin
  • C12R 1/865 - Saccharomyces cerevisiae

7.

BIOSYNTHESIS OF CANNABINOIDS AND CANNABINOID PRECURSORS

      
Application Number 18859980
Status Pending
Filing Date 2023-04-24
First Publication Date 2025-09-11
Owner Ginkgo Bioworks, Inc. (USA)
Inventor
  • Carvalho, Brian
  • Ritter, Seth
  • Wrenbeck, Emily E.

Abstract

Aspects of the disclosure relate to biosynthesis of cannabinoids and cannabinoid precursors in recombinant cells and in vitro. Described are host cells comprising heterologous polynucleotides encoding polyketide synthase (PKS) variants that are capable of producing more divarinol in the presence of butyrate.

IPC Classes  ?

  • C12P 7/42 - Hydroxy carboxylic acids
  • C12N 1/18 - Baker's yeastBrewer's yeast
  • C12N 1/20 - BacteriaCulture media therefor
  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes
  • C12N 9/10 - Transferases (2.)
  • C12N 9/88 - Lyases (4.)
  • C12P 7/22 - Preparation of oxygen-containing organic compounds containing a hydroxy group aromatic
  • C12R 1/19 - Escherichia coli
  • C12R 1/84 - Pichia
  • C12R 1/865 - Saccharomyces cerevisiae

8.

BIOSYNTHESIS OF CANNABINOIDS AND CANNABINOID PRECURSORS

      
Application Number 18849234
Status Pending
Filing Date 2023-03-22
First Publication Date 2025-06-26
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Brevnova, Elena
  • Carlin, Dylan Alexander
  • Carvalho, Brian
  • Rodriguez, Gabriel

Abstract

Aspects of the disclosure relate to biosynthesis of cannabinoids and cannabinoid precursors in recombinant cells and in vitro.

IPC Classes  ?

  • C12N 15/81 - Vectors or expression systems specially adapted for eukaryotic hosts for fungi for yeasts
  • C12N 1/18 - Baker's yeastBrewer's yeast
  • C12N 1/20 - BacteriaCulture media therefor
  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes
  • C12N 9/02 - Oxidoreductases (1.), e.g. luciferase
  • C12N 9/10 - Transferases (2.)
  • C12N 9/88 - Lyases (4.)
  • C12N 9/98 - Preparation of granular or free-flowing enzyme compositions
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12P 7/22 - Preparation of oxygen-containing organic compounds containing a hydroxy group aromatic
  • C12P 7/42 - Hydroxy carboxylic acids

9.

PESTICIDAL GENES AND METHODS OF USE

      
Application Number US2024060102
Publication Number 2025/129045
Status In Force
Filing Date 2024-12-13
Publication Date 2025-06-19
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Gerber, Ryan M.
  • Peele, Charles G.
  • Lenzen, Sara
  • Palekar, Narendra V.
  • Ren, Peifeng

Abstract

Compositions having pesticidal activity and methods for their use are provided. Compositions include isolated and recombinant polypeptide sequences having pesticidal activity, recombinant and synthetic nucleic acid molecules encoding the pesticidal polypeptides, DNA constructs comprising the nucleic acid molecules, vectors comprising the nucleic acid molecules, host cells comprising the vectors, and antibodies to the pesticidal polypeptides. Nucleotide sequences encoding the polypeptides provided herein can be used in DNA constructs or expression cassettes for transformation and expression in organisms of interest. The compositions and methods provided herein are useful for the production of organisms with enhanced pest resistance or tolerance. Transgenic plants and seeds comprising a nucleotide sequence that encodes a pesticidal protein of the invention are also provided. Methods are provided for producing the polypeptides disclosed herein, and for using those polypeptides for controlling a pest. Methods and kits for detecting polypeptides of the invention in a sample are also included.

IPC Classes  ?

  • C07K 14/37 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from fungi
  • C12N 15/82 - Vectors or expression systems specially adapted for eukaryotic hosts for plant cells
  • A01N 63/00 - Biocides, pest repellants or attractants, or plant growth regulators containing microorganisms, viruses, microbial fungi, animals or substances produced by, or obtained from, microorganisms, viruses, microbial fungi or animals, e.g. enzymes or fermentates
  • A01N 65/00 - Biocides, pest repellants or attractants, or plant growth regulators containing material from algae, lichens, bryophyta, multi-cellular fungi or plants, or extracts thereof
  • C12N 15/66 - General methods for inserting a gene into a vector to form a recombinant vector using cleavage and ligationUse of non-functional linkers or adaptors, e.g. linkers containing the sequence for a restriction endonuclease

10.

COMPOSITIONS AND METHODS FOR CONTROLLING PLANT PESTS AND IMPROVING PLANT HEALTH

      
Application Number 19036199
Status Pending
Filing Date 2025-01-24
First Publication Date 2025-06-05
Owner GINKGO BIOWORKS, INC. (USA)
Inventor Gachango, Esther

Abstract

Compositions and methods for controlling plant pests and/or improving at least one agronomic trait of interest in a plant are provided. Such compositions and methods comprise a bacterial strain that can be used as an inoculant for plants. Therefore, methods for growing a plant susceptible to a plant pest and/or plant disease caused by a plant pest and methods for controlling plant pests and/or plant disease on a plant susceptible to the plant pest and/or plant disease are also provided.

IPC Classes  ?

11.

GENE THERAPY FOR ARRHYTHMOGENIC CARDIOMYOPATHY

      
Application Number 18838928
Status Pending
Filing Date 2023-02-17
First Publication Date 2025-05-08
Owner Ginkgo Bioworks, Inc. (USA)
Inventor
  • Graef, John
  • Sun, Chicheng

Abstract

The disclosure provides nucleic acids (comprising AAV expression cassettes), AAV vectors, and compositions for use in methods for treating and/or delaying the onset of diseases associated with mutations in genes, such as PKP2, associated with arrhythmogenic cardiomyopathy. Also, provided herein are methods for treating and/or delaying the onset of arrhythmogenic cardiomyopathy.

IPC Classes  ?

  • A61K 48/00 - Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseasesGene therapy
  • C07K 14/47 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from animalsPeptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from humans from vertebrates from mammals
  • C12N 15/86 - Viral vectors

12.

CHIMERIC IMMUNE CELL RECEPTORS

      
Application Number US2024047178
Publication Number 2025/064482
Status In Force
Filing Date 2024-09-18
Publication Date 2025-03-27
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Chen, Aye, Tinmaung
  • Guo, Lan
  • Daines, Bryce
  • Darnell, Max, Carlton
  • Williams, Madeline, Dee
  • Belmont, Brian, Joshua
  • Turk, Rebekah, Ilona

Abstract

The present disclosure provides, among other things, methods and compositions useful in the engineering of chimeric switch receptors (CSRs) and/or natural killer (NK) cells. The present disclosure provides, among other things, sequences for use in stimulatory domains, such as CSR stimulatory domains that are engineered to promote expansion, persistence, and/or function of NK cells, especially under immunosuppressive conditions. The present disclosure further provides combinations of sequences for use in stimulatory domains, such as CSR stimulatory domains that are engineered to promote expansion, persistence, and/or function of NK cells, especially under immunosuppressive conditions.

IPC Classes  ?

  • A61K 40/15 - Natural-killer [NK] cellsNatural-killer T [NKT] cells
  • A61K 40/35 - Cytokines
  • A61K 40/36 - Immune checkpoint inhibitors
  • A61K 40/42 - Cancer antigens
  • C07K 14/725 - T-cell receptors
  • C07K 14/73 - CD4
  • C07K 14/705 - ReceptorsCell surface antigensCell surface determinants
  • C07K 14/735 - Fc receptors
  • C07K 14/71 - ReceptorsCell surface antigensCell surface determinants for growth factorsReceptorsCell surface antigensCell surface determinants for growth regulators
  • C07K 14/715 - ReceptorsCell surface antigensCell surface determinants for cytokinesReceptorsCell surface antigensCell surface determinants for lymphokinesReceptorsCell surface antigensCell surface determinants for interferons

13.

ANTIBODY-EVADING VIRUS VECTORS

      
Application Number 18797183
Status Pending
Filing Date 2024-08-07
First Publication Date 2025-03-20
Owner Ginkgo Bioworks, Inc. (USA)
Inventor
  • Mccoy, Daniel
  • Berry, Garrett E.
  • Smith, James Kennon

Abstract

The present disclosure provides AAV capsid proteins comprising a modification in the amino acid sequence and virus vectors comprising the modified AAV capsid protein. The disclosure also provides methods of administering the virus vectors and virus capsids of the disclosure to a cell or to a subject in vivo.

IPC Classes  ?

  • C07K 14/015 - Parvoviridae, e.g. feline panleukopenia virus, human parvovirus
  • A61K 38/00 - Medicinal preparations containing peptides
  • C07K 14/005 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from viruses
  • C07K 14/47 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from animalsPeptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from humans from vertebrates from mammals
  • C12N 7/00 - Viruses, e.g. bacteriophagesCompositions thereofPreparation or purification thereof
  • C12N 9/22 - Ribonucleases
  • C12N 15/11 - DNA or RNA fragmentsModified forms thereof
  • C12N 15/86 - Viral vectors

14.

GINKGO BIOSECURITY

      
Application Number 1843317
Status Registered
Filing Date 2024-11-14
Registration Date 2024-11-14
Owner Ginkgo Bioworks, Inc. (USA)
NICE Classes  ?
  • 09 - Scientific and electric apparatus and instruments
  • 41 - Education, entertainment, sporting and cultural services
  • 42 - Scientific, technological and industrial services, research and design
  • 44 - Medical, veterinary, hygienic and cosmetic services; agriculture, horticulture and forestry services
  • 45 - Legal and security services; personal services for individuals.

Goods & Services

Downloadable electronic publications in the nature of reports, white papers, and articles in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence. Providing online non-downloadable publications in the nature of reports, white papers, and articles in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence. Monitoring and testing of water, air, soil, surfaces, and human and animal reservoirs for viruses, pathogens, and pharmaceutical and drug contaminants; detection of viruses, pathogens, and pharmaceutical and drug contaminants in water, air, soil, surfaces, and human and animal reservoirs; scientific and technological services, namely, bio-sample testing services for others in the fields of biosecurity, biosurveillance, bioinformatics, biointelligence, scientific research, and scientific diagnostics; scientific and technological services, namely, biosecurity surveillance for analyzing food, water, air, and environmental resource safety; consulting services for others in the field of design, planning, and implementation project management of biosecurity initiatives related to the monitoring, testing, and detection of viruses, pathogens, and pharmaceutical and drug contaminants in water, air, soil, surfaces, and human and animal reservoirs; scientific laboratory services; scientific and technological research and development in the fields of biosecurity, biosurveillance, bioinformatics, and biointelligence; providing scientific and technological information in the fields of biosecurity, biosurveillance, bioinformatics, and biointelligence; scientific and technological services, namely, analysis, and reporting in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence; providing online non-downloadable software for viewing reports and delivering, accessing, sharing, analyzing, and visualizing data in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence. Medical consulting in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence; providing medical information in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence; all of the foregoing services based on information collected from bio-sample monitoring and testing of water, air, soil, surfaces, and human and animal reservoirs. Surveillance services, namely, surveillance of premises for viruses, pathogens, and pharmaceutical and drug contaminants.

15.

BIOSYNTHESIS OF OXYGENATED HYDROCARBONS

      
Application Number 18830141
Status Pending
Filing Date 2024-09-10
First Publication Date 2025-03-06
Owner Ginkgo Bioworks, Inc. (USA)
Inventor
  • Brevnova, Elena
  • Da Costa, Bernardo Moura Torres
  • Haranahalli, Krupanandan
  • Rodriguez, Gabriel
  • Torrens-Spence, Michael
  • Vento, Justin

Abstract

Described herein are CB5 polypeptides for the biosynthesis of oxygenated hydrocarbons in modified host cells.

IPC Classes  ?

  • C12P 33/12 - Acting on D ring
  • C07K 14/80 - Cytochromes
  • C12N 1/18 - Baker's yeastBrewer's yeast
  • C12N 1/20 - BacteriaCulture media therefor
  • C12N 9/02 - Oxidoreductases (1.), e.g. luciferase
  • C12N 9/04 - Oxidoreductases (1.), e.g. luciferase acting on CHOH groups as donors, e.g. glucose oxidase, lactate dehydrogenase (1.1)
  • C12N 9/14 - Hydrolases (3.)
  • C12P 7/26 - Ketones
  • C12P 17/12 - Nitrogen as only ring hetero atom containing a six-membered hetero ring
  • C12P 17/18 - Preparation of heterocyclic carbon compounds with only O, N, S, Se, or Te as ring hetero atoms containing at least two hetero rings condensed among themselves or condensed with a common carbocyclic ring system, e.g. rifamycin
  • C12P 33/20 - Preparation of steroids containing heterocyclic rings
  • C12R 1/865 - Saccharomyces cerevisiae

16.

ENGINEERED CELLS FOR PRODUCTION OF MALONATE

      
Application Number US2024041713
Publication Number 2025/038447
Status In Force
Filing Date 2024-08-09
Publication Date 2025-02-20
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Consiglio, Andrew, L.
  • Exner, Alexandra
  • Lorenz, Christian
  • Trueheart, Joshua

Abstract

The present disclosure relates to methods, cells, and compositions useful for producing malonate.

IPC Classes  ?

  • C12N 9/16 - Hydrolases (3.) acting on ester bonds (3.1)
  • C12N 15/81 - Vectors or expression systems specially adapted for eukaryotic hosts for fungi for yeasts
  • C12P 7/46 - Dicarboxylic acids having four or less carbon atoms, e.g. fumaric acid, maleic acid

17.

IMMUNE CELL STIMULATORY SEQUENCES

      
Application Number US2024042039
Publication Number 2025/038602
Status In Force
Filing Date 2024-08-13
Publication Date 2025-02-20
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Chen, Aye, Tinmaung
  • Guo, Lan
  • Daines, Bryce
  • Darnell, Max, Carlton
  • Williams, Madeline, Dee
  • Belmont, Brian, Joshua

Abstract

The present disclosure provides, among other things, methods and compositions useful in the engineering of chimeric antigen receptors (CARs) and/or T cells. The present disclosure provides, among other things, sequences for use in stimulatory domains, such as CAR stimulatory domains that are engineered to promote expansion, persistence, and/or function of T cells. The present disclosure further provides combinations of sequences for use in stimulatory domains, such as CAR stimulatory domains that are engineered to promote expansion, persistence, and/or function of T cells.

IPC Classes  ?

  • A61K 39/00 - Medicinal preparations containing antigens or antibodies
  • A61P 35/00 - Antineoplastic agents

18.

GINKGO HORIZON

      
Application Number 1838651
Status Registered
Filing Date 2024-09-26
Registration Date 2024-09-26
Owner Ginkgo Bioworks, Inc. (USA)
NICE Classes  ?
  • 09 - Scientific and electric apparatus and instruments
  • 41 - Education, entertainment, sporting and cultural services
  • 42 - Scientific, technological and industrial services, research and design
  • 44 - Medical, veterinary, hygienic and cosmetic services; agriculture, horticulture and forestry services

Goods & Services

Downloadable electronic publications in the nature of reports, white papers, and articles in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence. Providing online non-downloadable publications in the nature of reports, white papers, and articles in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence. Providing online non-downloadable software for viewing reports and delivering, accessing, sharing, analyzing, and visualizing data in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence; scientific and technological services, namely, analysis, and reporting in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence; providing scientific and technological information in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence. Medical consulting in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence; providing medical information in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence; all of the foregoing services based on information collected from bio-sample monitoring and testing of water, air, soil, surfaces, and human and animal reservoirs.

19.

GINKGO CANOPY

      
Application Number 1838650
Status Registered
Filing Date 2024-09-26
Registration Date 2024-09-26
Owner Ginkgo Bioworks, Inc. (USA)
NICE Classes  ?
  • 42 - Scientific, technological and industrial services, research and design
  • 44 - Medical, veterinary, hygienic and cosmetic services; agriculture, horticulture and forestry services
  • 45 - Legal and security services; personal services for individuals.

Goods & Services

Monitoring and testing of water, air, soil, surfaces, and human and animal reservoirs for viruses, pathogens, and pharmaceutical and drug contaminants; detection of viruses, pathogens, and pharmaceutical and drug contaminants in water, air, soil, surfaces, and human and animal reservoirs; scientific and technological services, namely, bio-sample testing services for others in the fields of biosecurity, biosurveillance, bioinformatics, biointelligence, scientific research, and scientific diagnostics; scientific and technological services, namely, biosecurity surveillance for analyzing food, water, air, and environmental resource safety; consulting services for others in the field of design, planning, and implementation project management of biosecurity initiatives related to the monitoring, testing, and detection of viruses, pathogens, and pharmaceutical and drug contaminants in water, air, soil, surfaces, and human and animal reservoirs; scientific laboratory services; scientific and technological research and development in the fields of biosecurity, biosurveillance, bioinformatics, and biointelligence; providing scientific and technological information in the fields of biosecurity, biosurveillance, bioinformatics, and biointelligence; scientific and technological services, namely, data analysis in the fields of biosecurity, biosurveillance, bioinformatics, and biointelligence. Medical consulting in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence; providing medical information in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence; all of the foregoing services based on information collected from bio-sample monitoring and testing of water, air, soil, surfaces, and human and animal reservoirs. Surveillance services, namely, surveillance of premises for viruses, pathogens, and pharmaceutical and drug contaminants.

20.

FLUID SAMPLING DEVICE

      
Application Number US2024040488
Publication Number 2025/029988
Status In Force
Filing Date 2024-08-01
Publication Date 2025-02-06
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Turner, Sativa
  • Frehn, Steven
  • Deagon, Andrew

Abstract

A fluid sampling device includes a port adapter configured to be coupled to a fluid conduit external to the fluid sampling device. The port adapter includes a housing that defines a first fluid conduit with an inlet and an outlet and a sidewall extending therebetween. A second fluid conduit extends through the sidewall of the housing into the first fluid conduit and is in fluid communication therewith. A collection adapter is detachably coupled to the port adapter via the second fluid conduit and a hose is coupled to the collection adapter and extends through the second fluid conduit into the first fluid conduit.

IPC Classes  ?

  • G01N 1/20 - Devices for withdrawing samples in the liquid or fluent state for flowing or falling materials
  • G01N 1/14 - Suction devices, e.g. pumpsEjector devices

21.

ENGINEERED PHENYLALANINE AMMONIA LYASE ENZYMES

      
Application Number 18690104
Status Pending
Filing Date 2022-09-08
First Publication Date 2024-12-26
Owner
  • Ginkgo Bioworks, Inc. (USA)
  • Synlogic Operating Company, Inc. (USA)
Inventor
  • Carlin, Dylan Alexander
  • Hecht, Ariel
  • Isablella, Vincent
  • Mcmurry, Jonathan Lewis
  • Monahan, Catherine
  • Reppas, Nikos
  • Ridley, Christan
  • Schmidt, Nathan W.

Abstract

Aspects of the disclosure relate to phenylalanine ammonia lyase (PAL) enzymes, including engineered PAL enzymes, and their use in catalyzing chemical reactions. Aspects of the disclosure relate to phenylalanine ammonia lyase (PAL) enzymes, including engineered PAL enzymes, and their use in catalyzing chemical reactions.

IPC Classes  ?

  • C12N 9/88 - Lyases (4.)
  • A61K 38/51 - Lyases (4)
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • C12P 7/40 - Preparation of oxygen-containing organic compounds containing a carboxyl group

22.

PRENYLTRANSFERASES FOR PRENYLATING STILBENES

      
Application Number US2024031038
Publication Number 2024/249314
Status In Force
Filing Date 2024-05-24
Publication Date 2024-12-05
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Brevnova, Elena
  • Gardin, Justin, Michael
  • Mays, Zachary, John Singer
  • Mitchell, Andrew, J.
  • Ramos Alvarenga, Rene, Francisco
  • Ranson, Hilary, Joan Grant
  • Rodriguez, Gabriel
  • Yamada, Kyle, Sugasawa

Abstract

Aspects of the disclosure relate to use of prenyltransferases for the production of prenylated stilbenes in recombinant cells or in vitro. Further aspects of the disclosure relate to use of prenyltransferases for the production of prenylated acridines in recombinant cells or in vitro.

IPC Classes  ?

  • C12N 9/10 - Transferases (2.)
  • C12N 15/81 - Vectors or expression systems specially adapted for eukaryotic hosts for fungi for yeasts
  • C12P 7/22 - Preparation of oxygen-containing organic compounds containing a hydroxy group aromatic
  • C12P 17/12 - Nitrogen as only ring hetero atom containing a six-membered hetero ring
  • C12R 1/865 - Saccharomyces cerevisiae

23.

ENGINEERED CELLS FOR THE PRODUCTION OF GADUSOL

      
Application Number US2024029523
Publication Number 2024/238695
Status In Force
Filing Date 2024-05-15
Publication Date 2024-11-21
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Buckler-Carey, Lucas, Keith
  • Li, Jingbo
  • Parachin, Nadia

Abstract

Described in this application are proteins and host cells involved in methods of producing gadusol.

IPC Classes  ?

24.

BIOSYNTHESIS OF CANNABINOIDS AND CANNABINOID PRECURSORS

      
Application Number 18696714
Status Pending
Filing Date 2022-09-29
First Publication Date 2024-11-21
Owner Ginkgo Bioworks, Inc. (USA)
Inventor Carvalho, Brian

Abstract

Aspects of the disclosure relate to biosynthesis of cannabinoids and cannabinoid precursors in recombinant cells and in vitro.

IPC Classes  ?

  • C12P 7/22 - Preparation of oxygen-containing organic compounds containing a hydroxy group aromatic
  • C12M 1/40 - Apparatus specially designed for the use of free, immobilised, or carrier-bound enzymes, e.g. apparatus containing a fluidised bed of immobilised enzymes
  • C12N 9/10 - Transferases (2.)

25.

NOVEL INTERNAL RIBOSOME ENTRY SITE (IRES) AND INTRON SEQUENCES

      
Application Number US2024026012
Publication Number 2024/226621
Status In Force
Filing Date 2024-04-24
Publication Date 2024-10-31
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Amarnath, Smita
  • Cifuentes-Rojas, Catherine
  • Harnett, Dermot
  • Krishnan, Harini
  • Maheshri, Narendra
  • Nizovtseva, Ekaterina
  • Ramirez-Tapia, Luis
  • Scheidegger, Adam

Abstract

In certain aspects, the present disclosure provides nucleic acid molecules containing an internal ribosomal entry site and/or two introns for production of linear and/or circularized nucleic acid molecules, as well as methods of preparation and methods of use.

IPC Classes  ?

  • C12N 15/67 - General methods for enhancing the expression
  • C12N 15/113 - Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides
  • C12P 19/34 - Polynucleotides, e.g. nucleic acids, oligoribonucleotides

26.

BIOSYNTHESIS OF MOGROSIDES

      
Application Number US2024025280
Publication Number 2024/220717
Status In Force
Filing Date 2024-04-18
Publication Date 2024-10-24
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Beaudoin, Guillaume
  • Bober, Josef
  • Gardin, Justin, Michael
  • Mcmahon, Matthew
  • Patel, Krishnaben, S.
  • Bombino, Elvira

Abstract

Described in this application are proteins and host cells involved in methods of producing mogrosides, such as siamenoside.

IPC Classes  ?

  • C12N 15/81 - Vectors or expression systems specially adapted for eukaryotic hosts for fungi for yeasts
  • C12N 9/42 - Hydrolases (3.) acting on glycosyl compounds (3.2) acting on beta-1, 4-glucosidic bonds, e.g. cellulase
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 15/62 - DNA sequences coding for fusion proteins
  • C12P 19/18 - Preparation of compounds containing saccharide radicals produced by the action of a glycosyl transferase, e.g. alpha-, beta- or gamma-cyclodextrins
  • C12P 19/56 - Preparation of O-glycosides, e.g. glucosides having an oxygen atom of the saccharide radical directly bound to a condensed ring system having three or more carbocyclic rings, e.g. daunomycin, adriamycin
  • C12R 1/645 - Fungi

27.

BIOSYNTHESIS OF BETA-LACTAM ANTIBIOTICS

      
Application Number US2024023749
Publication Number 2024/215680
Status In Force
Filing Date 2024-04-09
Publication Date 2024-10-17
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Haranahalli, Krupanandan
  • Hou, Shurong
  • Mcmurry, Jonathan, Lewis
  • Stiles, Dylan
  • Waldman, Abraham
  • Wrenbeck, Emily, E.
  • Harald Van Schie, Morten, Martinus Cornelis
  • Van Der Does, Thomas

Abstract

Aspects of the disclosure relate to penicillin G acylase (PGA) enzymes, including engineered PGA enzymes, and their use in catalyzing chemical reactions related to biosynthesis of beta-lactam antibiotics.

IPC Classes  ?

  • C12N 9/84 - Penicillin amidase
  • C12P 35/04 - Preparation of compounds having a 5-thia-1-azabicyclo [4.2.0] octane ring system, e.g. cephalosporin by acylation of the substituent in the 7 position
  • C12P 37/04 - Preparation of compounds having a 4-thia-1-azabicyclo [3.2.0] heptane ring system, e.g. penicillin by acylation of the substituent in the 6 position

28.

GINKGO CANOPY

      
Application Number 237965500
Status Pending
Filing Date 2024-09-26
Owner Ginkgo Bioworks, Inc. (USA)
NICE Classes  ?
  • 42 - Scientific, technological and industrial services, research and design
  • 44 - Medical, veterinary, hygienic and cosmetic services; agriculture, horticulture and forestry services
  • 45 - Legal and security services; personal services for individuals.

Goods & Services

(1) Monitoring and testing of water, air, soil, surfaces, and human and animal reservoirs for viruses, pathogens, and pharmaceutical and drug contaminants; detection of viruses, pathogens, and pharmaceutical and drug contaminants in water, air, soil, surfaces, and human and animal reservoirs; scientific and technological services, namely, bio-sample testing services for others in the fields of biosecurity, biosurveillance, bioinformatics, biointelligence, scientific research, and scientific diagnostics; scientific and technological services, namely, biosecurity surveillance for analyzing food, water, air, and environmental resource safety; consulting services for others in the field of design, planning, and implementation project management of biosecurity initiatives related to the monitoring, testing, and detection of viruses, pathogens, and pharmaceutical and drug contaminants in water, air, soil, surfaces, and human and animal reservoirs; scientific laboratory services; scientific and technological research and development in the fields of biosecurity, biosurveillance, bioinformatics, and biointelligence; providing scientific and technological information in the fields of biosecurity, biosurveillance, bioinformatics, and biointelligence; scientific and technological services, namely, data analysis in the fields of biosecurity, biosurveillance, bioinformatics, and biointelligence. (2) Medical consulting in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence; providing medical information in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence; all of the foregoing services based on information collected from bio-sample monitoring and testing of water, air, soil, surfaces, and human and animal reservoirs. (3) Surveillance services, namely, surveillance of premises for viruses, pathogens, and pharmaceutical and drug contaminants.

29.

GINKGO HORIZON

      
Application Number 237965600
Status Pending
Filing Date 2024-09-26
Owner Ginkgo Bioworks, Inc. (USA)
NICE Classes  ?
  • 09 - Scientific and electric apparatus and instruments
  • 41 - Education, entertainment, sporting and cultural services
  • 42 - Scientific, technological and industrial services, research and design
  • 44 - Medical, veterinary, hygienic and cosmetic services; agriculture, horticulture and forestry services

Goods & Services

(1) Downloadable electronic publications in the nature of reports, white papers, and articles in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence. (1) Providing online non-downloadable publications in the nature of reports, white papers, and articles in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence. (2) Providing online non-downloadable software for viewing reports and delivering, accessing, sharing, analyzing, and visualizing data in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence; scientific and technological services, namely, analysis, and reporting in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence; providing scientific and technological information in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence. (3) Medical consulting in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence; providing medical information in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence; all of the foregoing services based on information collected from bio-sample monitoring and testing of water, air, soil, surfaces, and human and animal reservoirs.

30.

GENE THERAPY FOR ANGELMAN SYNDROME

      
Application Number US2024014810
Publication Number 2024/168043
Status In Force
Filing Date 2024-02-07
Publication Date 2024-08-15
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Sheets, Kevin
  • Borchardt, Erin

Abstract

The disclosure provides nucleic acids (comprising AAV expression cassettes), AAV vectors, and compositions for use in methods for treating and/or delaying the onset of diseases associated with mutations in genes, such as UBE3A, associated with Angelman syndrome. Also, provided herein are methods for treating and/or delaying the onset of Angelman syndrome.

IPC Classes  ?

  • A61K 48/00 - Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseasesGene therapy
  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes
  • C12N 15/86 - Viral vectors

31.

GENE THERAPY FOR ANGELMAN SYNDROME

      
Application Number 18435561
Status Pending
Filing Date 2024-02-07
First Publication Date 2024-08-08
Owner Ginkgo Bioworks, Inc. (USA)
Inventor
  • Sheets, Kevin
  • Borchardt, Erin

Abstract

The disclosure provides nucleic acids (comprising AAV expression cassettes), AAV vectors, and compositions for use in methods for treating and/or delaying the onset of diseases associated with mutations in genes, such as UBE3A, associated with Angelman syndrome. Also, provided herein are methods for treating and/or delaying the onset of Angelman syndrome.

IPC Classes  ?

  • A61K 48/00 - Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseasesGene therapy
  • A61K 38/53 - Ligases (6)
  • A61P 25/28 - Drugs for disorders of the nervous system for treating neurodegenerative disorders of the central nervous system, e.g. nootropic agents, cognition enhancers, drugs for treating Alzheimer's disease or other forms of dementia
  • C12N 7/00 - Viruses, e.g. bacteriophagesCompositions thereofPreparation or purification thereof
  • C12N 15/86 - Viral vectors

32.

IMMUNE CELL STIMULATORY SEQUENCES

      
Application Number US2024012595
Publication Number 2024/158800
Status In Force
Filing Date 2024-01-23
Publication Date 2024-08-02
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Chen, Aye, Tinmaung
  • Young, Mary, Helen
  • Guo, Lan
  • Daines, Bryce
  • Williams, Madeline, Dee
  • Belmont, Brian, Joshua

Abstract

The present disclosure provides, among other things, methods and compositions useful in the engineering of chimeric antigen receptors (CARs) and/or natural killer (NK) cells. The present disclosure provides, among other things, sequences for use in stimulatory domains, such as CAR stimulatory domains that are engineered to promote expansion, persistence, and/or function of NK cells. The present disclosure further provides combinations of sequences for use in stimulatory domains, such as CAR stimulatory domains that are engineered to promote expansion, persistence, and/or function of NK cells.

IPC Classes  ?

  • A61K 35/17 - LymphocytesB-cellsT-cellsNatural killer cellsInterferon-activated or cytokine-activated lymphocytes
  • A61P 35/00 - Antineoplastic agents
  • C07K 14/705 - ReceptorsCell surface antigensCell surface determinants
  • C12N 15/85 - Vectors or expression systems specially adapted for eukaryotic hosts for animal cells
  • C12N 15/86 - Viral vectors
  • C12N 5/0783 - T cellsNK cellsProgenitors of T or NK cells
  • C12N 5/10 - Cells modified by introduction of foreign genetic material, e.g. virus-transformed cells
  • G01N 33/574 - ImmunoassayBiospecific binding assayMaterials therefor for cancer

33.

COMPOSITIONS AND METHODS FOR IMPROVING PLANT HEALTH AND CONTROLLING PLANT DISEASE

      
Application Number 18561952
Status Pending
Filing Date 2022-05-17
First Publication Date 2024-08-01
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Biggs, Matthew Bryon
  • Gachango, Esther
  • Ingham, David Joseph
  • Mccorkle, Kestrel Lannon
  • Twizeyimana, Mathias

Abstract

Compositions and methods for controlling a plant pest or for treating or preventing plant disease are provided. Such compositions and methods comprise a bacterial strain that controls one or more plant pests or that improves at least one agronomic trait of interest in a plant. The bacterial strain can be used as an inoculant for plants. Methods for controlling a plant pest, for growing a plant susceptible to a plant disease, and for controlling plant disease on a plant susceptible to the plant disease are provided. Methods for improving at least one agronomic trait of interest in a plant are also provided.

IPC Classes  ?

34.

INTERGENERIC ENDOSPORE DISPLAY PLATFORMS, PRODUCTS AND METHODS

      
Application Number 18563054
Status Pending
Filing Date 2022-05-21
First Publication Date 2024-07-11
Owner Ginkgo Bioworks, Inc (USA)
Inventor
  • Curtis, Damian
  • Mccann, Ryan
  • Tipton, Kyle

Abstract

Signal sequences useful for targeting proteins and peptides to the surface of endospores produced by multiple bacterial genera (e.g., Brevibacillus, Lysinibacillus, Viridibacillus, and/or Paenibacillus family members) and methods of using the same are provided. The display of heterologous molecules, such as peptides, polypeptides and other recombinant constructs, on the exosporium of Brevibacillus, Lysinibacillus, Viridibacillus, and/or Paenibacillus family members, using particular N-terminal targeting sequences and derivatives of the same, and likewise are provided.

IPC Classes  ?

  • C07K 14/195 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from bacteria
  • A01N 63/20 - BacteriaSubstances produced thereby or obtained therefrom
  • A01N 63/25 - Paenibacillus
  • C12N 15/62 - DNA sequences coding for fusion proteins
  • C12N 15/74 - Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora

35.

BIOSYNTHESIS OF ISOPRENOIDS AND PRECURSORS THEREOF

      
Application Number 18285138
Status Pending
Filing Date 2022-04-01
First Publication Date 2024-07-04
Owner Ginkgo Bioworks, Inc. (USA)
Inventor
  • Beaudoin, Guillaume
  • Brevnova, Elena
  • Chatzivasileiou, Alkiviadis Orfefs
  • Exner, Alexandra
  • Kamineni, Annapuma
  • Mcmahon, Matthew
  • Trueheart, Joshua

Abstract

Described in this application are proteins and host cells involved in methods of producing isoprenoid precursors and/or isoprenoids.

IPC Classes  ?

  • C12P 7/42 - Hydroxy carboxylic acids
  • C12N 1/16 - YeastsCulture media therefor
  • C12N 1/20 - BacteriaCulture media therefor
  • C12N 9/04 - Oxidoreductases (1.), e.g. luciferase acting on CHOH groups as donors, e.g. glucose oxidase, lactate dehydrogenase (1.1)
  • C12N 9/10 - Transferases (2.)
  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 9/88 - Lyases (4.)
  • C12N 9/90 - Isomerases (5.)
  • C12P 17/02 - Oxygen as only ring hetero atoms
  • C12P 33/00 - Preparation of steroids
  • C12R 1/19 - Escherichia coli
  • C12R 1/865 - Saccharomyces cerevisiae

36.

BIOSYNTHESIS OF MOGROSIDES

      
Application Number 18285018
Status Pending
Filing Date 2022-04-01
First Publication Date 2024-06-20
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Beaudoin, Guillaume
  • Exner, Alexandra
  • Kamineni, Annapurna
  • Mcmahon, Matthew
  • Trueheart, Joshua

Abstract

Described in this application are proteins and host cells involved in methods of producing mogrol precursors, mogrol, and/or mogrosides.

IPC Classes  ?

  • C12P 19/56 - Preparation of O-glycosides, e.g. glucosides having an oxygen atom of the saccharide radical directly bound to a condensed ring system having three or more carbocyclic rings, e.g. daunomycin, adriamycin
  • C12N 9/02 - Oxidoreductases (1.), e.g. luciferase
  • C12N 9/10 - Transferases (2.)
  • C12N 9/14 - Hydrolases (3.)
  • C12N 9/90 - Isomerases (5.)
  • C12P 19/60 - Preparation of O-glycosides, e.g. glucosides having an oxygen of the saccharide radical directly bound to a non-saccharide heterocyclic ring or a condensed ring system containing a non-saccharide heterocyclic ring, e.g. coumermycin, novobiocin

37.

GENETICALLY MODIFIED YEAST CELLS AND METHODS OF USE FOR INCREASED LIPID YIELD

      
Application Number 18288954
Status Pending
Filing Date 2022-04-28
First Publication Date 2024-06-20
Owner Ginkgo Bioworks, Inc. (USA)
Inventor
  • Kamineni, Annapurna
  • Shaw, Arthur J.
  • Tsakraklides, Vasiliki

Abstract

Aspects of the disclosure are directed to genetically modified yeast cells and methods for use. Certain aspects are directed to recombinant yeast cells comprising exogenous nucleic acid sequences encoding phosphotransacetylase and/or phosphoketolase proteins, including a phosphoketolase protein from Clostridium acetobutylicum. Also disclosed are methods for generating recombinant yeast cells and methods of use of such cells for production of one or more products, including lipids, oils, fatty acids, and triacylglycerides.

IPC Classes  ?

  • C12N 1/16 - YeastsCulture media therefor
  • C12N 9/10 - Transferases (2.)
  • C12N 9/88 - Lyases (4.)
  • C12N 15/81 - Vectors or expression systems specially adapted for eukaryotic hosts for fungi for yeasts
  • C12P 5/00 - Preparation of hydrocarbons
  • C12P 7/6454 - Glycerides by esterification
  • C12P 7/6463 - Glycerides obtained from glyceride producing microorganisms, e.g. single cell oil
  • C12R 1/645 - Fungi

38.

AAV VECTORS TARGETING HEMATOPOIETIC STEM CELLS

      
Application Number US2023082922
Publication Number 2024/124019
Status In Force
Filing Date 2023-12-07
Publication Date 2024-06-13
Owner GINKGO BIOWORKS, INC. (USA)
Inventor Smith, James, Kennon

Abstract

The disclosure provides variant AAV capsid proteins and AAV capsids and virus vectors comprising the same. The virus vectors described herein may have increased transduction in a target cell of interest, such as a hematopoietic stem cell (HSC), compared to native AAV capsid sequences. The disclosure also provides methods of administering the virus vectors and virus capsids of the disclosure to a cell or to a patient in need thereof.

IPC Classes  ?

  • C07K 14/005 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from viruses
  • C12N 5/0789 - Stem cellsMultipotent progenitor cells
  • C12N 15/86 - Viral vectors

39.

PRODUCTION OF VACCINIA CAPPING ENZYME

      
Application Number 18284673
Status Pending
Filing Date 2022-03-29
First Publication Date 2024-06-06
Owner Ginkgo Bioworks, Inc. (USA)
Inventor
  • Bober, Josef
  • Boucher, Jeffrey Ian
  • Gardin, Justin Michael
  • King, Jason
  • Marr, Scott
  • Mcmahon, Matthew
  • Patel, Krishnaben S.
  • Waldman, Abraham

Abstract

Aspects of the disclosure relate to production of vaccinia capping enzyme (VCE) in host cells. For example, host cells may comprise: a promoter; a ribosome binding site (RBS); a nucleic acid encoding a vaccinia capping enzyme (VCE) or VCE subunit; and a terminator.

IPC Classes  ?

  • C12N 9/16 - Hydrolases (3.) acting on ester bonds (3.1)
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli

40.

INCREASED NITROGEN FIXATION USING BACTERIA WITH IMPROVED AMMONIA SECRETION

      
Application Number US2023080240
Publication Number 2024/108099
Status In Force
Filing Date 2023-11-17
Publication Date 2024-05-23
Owner
  • BAYER CROPSCIENCE LP (USA)
  • GINKGO BIOWORKS, INC. (USA)
Inventor Tan, Sue Zanne

Abstract

Herbaspirillum bacterial strains are engineered to express or overexpress one or more proteins and/or attenuate expression of or delete one or more genes involved in nitrogen fixation and its regulation. This enables the diazotrophic bacteria to secrete more ammonia. The engineered bacteria arc introduced to agricultural plants, or seeds for growing such, forming a symbiotic relationship that results in increased nitrogen availability to the plant and improved plant agronomic traits.

IPC Classes  ?

  • A01H 3/00 - Processes for modifying phenotypes
  • C12N 1/00 - Microorganisms, e.g. protozoaCompositions thereofProcesses of propagating, maintaining or preserving microorganisms or compositions thereofProcesses of preparing or isolating a composition containing a microorganismCulture media therefor

41.

GINKGO BIOSECURITY

      
Serial Number 98563720
Status Pending
Filing Date 2024-05-22
Owner Ginkgo Bioworks, Inc. ()
NICE Classes  ?
  • 09 - Scientific and electric apparatus and instruments
  • 41 - Education, entertainment, sporting and cultural services
  • 42 - Scientific, technological and industrial services, research and design
  • 44 - Medical, veterinary, hygienic and cosmetic services; agriculture, horticulture and forestry services
  • 45 - Legal and security services; personal services for individuals.

Goods & Services

Downloadable electronic publications in the nature of reports, white papers, and articles in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence Providing online non-downloadable publications in the nature of reports, white papers, and articles in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence Monitoring and testing of water, air, soil, surfaces, and human and animal reservoirs for viruses, pathogens, and pharmaceutical and drug contaminants; detection of viruses, pathogens, and pharmaceutical and drug contaminants in water, air, soil, surfaces, and human and animal reservoirs; scientific and technological services, namely, bio-sample testing services for others in the fields of biosecurity, biosurveillance, bioinformatics, biointelligence, scientific research, and scientific diagnostics; scientific and technological services, namely, biosecurity surveillance for analyzing food, water, air, and environmental resource safety; consulting services for others in the field of design, planning, and implementation project management of biosecurity initiatives related to the monitoring, testing, and detection of viruses, pathogens, and pharmaceutical and drug contaminants in water, air, soil, surfaces, and human and animal reservoirs; scientific laboratory services; scientific and technological research and development in the fields of biosecurity, biosurveillance, bioinformatics, and biointelligence; providing scientific and technological information in the fields of biosecurity, biosurveillance, bioinformatics, and biointelligence; scientific and technological services, namely, data collection, analysis, and reporting in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence; providing online non-downloadable software for viewing reports and delivering, accessing, sharing, analyzing, and visualizing data in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence Medical consulting in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence; providing medical information in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence; all of the foregoing services based on information collected from bio-sample monitoring and testing of water, air, soil, surfaces, and human and animal reservoirs Surveillance services, namely, surveillance of premises for viruses, pathogens, and pharmaceutical and drug contaminants

42.

BIOSYNTHESIS OF MOGROSIDES

      
Application Number 18281479
Status Pending
Filing Date 2022-03-11
First Publication Date 2024-05-16
Owner Ginkgo Gioworks, Inc. (USA)
Inventor
  • Becker, Diveena
  • Bober, Josef
  • Gardin, Justin Michael
  • Mcmahon, Matthew

Abstract

Described in this application are proteins and host cells involved in methods of producing mogrol precursors, mogrol, and/or mogrosides.

IPC Classes  ?

  • C07K 14/415 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from plants
  • C12N 9/02 - Oxidoreductases (1.), e.g. luciferase
  • C12N 9/14 - Hydrolases (3.)
  • C12N 9/90 - Isomerases (5.)
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12P 19/56 - Preparation of O-glycosides, e.g. glucosides having an oxygen atom of the saccharide radical directly bound to a condensed ring system having three or more carbocyclic rings, e.g. daunomycin, adriamycin
  • C12P 33/20 - Preparation of steroids containing heterocyclic rings

43.

ORGANOPHOSPHORUS NERVE AGENT HYDROLYZING ENZYMES

      
Application Number 18283688
Status Pending
Filing Date 2022-04-15
First Publication Date 2024-05-02
Owner Ginkgo Bioworks, Inc. (USA)
Inventor
  • Borhani, David
  • Carlin, Dylan Alexander
  • Tucker, Alex

Abstract

Aspects of the disclosure relate to phosphotriesterase (PTE) enzymes and PTE-related (PTER) enzymes and their use in hydrolyzing OPNAs.

IPC Classes  ?

44.

CHIMERIC ANTIGEN RECEPTORS COMPRISING AN INTRACELLULAR DOMAIN PAIR

      
Application Number US2023036126
Publication Number 2024/091669
Status In Force
Filing Date 2023-10-27
Publication Date 2024-05-02
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Kyung, Taeyoon
  • Eshghi, Shawdee
  • Mace, Joshua
  • Zhao, Siqi

Abstract

The present disclosure provides chimeric antigen receptors, cells expressing such chimeric antigen receptors, compositions of cells expressing such chimeric antigen receptors, as well as methods of making and using the same.

IPC Classes  ?

  • C07K 14/725 - T-cell receptors
  • A61K 39/00 - Medicinal preparations containing antigens or antibodies
  • C07K 14/705 - ReceptorsCell surface antigensCell surface determinants

45.

AAV VECTORS TARGETING T-CELLS

      
Application Number 18221211
Status Pending
Filing Date 2023-07-12
First Publication Date 2024-04-18
Owner Ginkgo Bioworks, Inc. (USA)
Inventor Smith, James Kennon

Abstract

The disclosure provides variant AAV capsid proteins and AAV capsids and virus vectors comprising the same. The virus vectors described herein may have increased transduction in a target cell of interest, such as a T-cell, compared to native AAV capsid sequences. The disclosure also provides methods of administering the virus vectors and virus capsids of the disclosure to a cell or to a patient in need thereof.

IPC Classes  ?

  • A61K 48/00 - Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseasesGene therapy
  • A61K 45/06 - Mixtures of active ingredients without chemical characterisation, e.g. antiphlogistics and cardiaca
  • C07K 14/005 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from viruses
  • C12N 5/0783 - T cellsNK cellsProgenitors of T or NK cells
  • C12N 15/86 - Viral vectors

46.

BIOSYNTHESIS OF CANNABINOIDS AND CANNABINOID PRECURSORS

      
Application Number 18031522
Status Pending
Filing Date 2021-10-12
First Publication Date 2024-04-04
Owner Ginkgo Bioworks, Inc. (USA)
Inventor
  • Carlin, Dylan Alexander
  • Carvalho, Brian
  • Flores, Nicholas
  • Forrest, Katrina
  • Rodriguez, Gabriel
  • Schmidt, Nathan W.
  • Spencer, Michelle

Abstract

Aspects of the disclosure relate to biosynthesis of cannabinoids and cannabinoid precursors in recombinant cells and in vitro. Specifically, the disclosure is directed to a prenyltransferase variant, a chimeric prenyltransferase comprising one or more portions of at least two different prenyltransferase proteins, and a fusion polypeptide comprising a CBG-type producing prenyltransferase and farnesyl pyrophosphate synthase.

IPC Classes  ?

  • C12P 7/42 - Hydroxy carboxylic acids
  • C12N 9/10 - Transferases (2.)
  • C12N 15/62 - DNA sequences coding for fusion proteins
  • C12N 15/81 - Vectors or expression systems specially adapted for eukaryotic hosts for fungi for yeasts

47.

GINKGO CANOPY

      
Serial Number 98480428
Status Pending
Filing Date 2024-04-02
Owner Ginkgo Bioworks, Inc. ()
NICE Classes  ?
  • 42 - Scientific, technological and industrial services, research and design
  • 44 - Medical, veterinary, hygienic and cosmetic services; agriculture, horticulture and forestry services
  • 45 - Legal and security services; personal services for individuals.

Goods & Services

Monitoring and testing of water, air, soil, surfaces, and human and animal reservoirs for viruses, pathogens, and pharmaceutical and drug contaminants; detection of viruses, pathogens, and pharmaceutical and drug contaminants in water, air, soil, surfaces, and human and animal reservoirs; scientific and technological services, namely, bio-sample testing services for others in the fields of biosecurity, biosurveillance, bioinformatics, biointelligence, scientific research, and scientific diagnostics; scientific and technological services, namely, biosecurity surveillance for analyzing food, water, air, and environmental resource safety; consulting services for others in the field of design, planning, and implementation project management of biosecurity initiatives related to the monitoring, testing, and detection of viruses, pathogens, and pharmaceutical and drug contaminants in water, air, soil, surfaces, and human and animal reservoirs; scientific laboratory services; scientific and technological research and development in the fields of biosecurity, biosurveillance, bioinformatics, and biointelligence; providing scientific and technological information in the fields of biosecurity, biosurveillance, bioinformatics, and biointelligence; scientific and technological services, namely, data collection and analysis in the fields of biosecurity, biosurveillance, bioinformatics, and biointelligence. Medical consulting in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence; providing medical information in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence; all of the foregoing services based on information collected from bio-sample monitoring and testing of water, air, soil, surfaces, and human and animal reservoirs. Surveillance services, namely, surveillance of premises for viruses, pathogens, and pharmaceutical and drug contaminants.

48.

CANOPY

      
Serial Number 98480432
Status Pending
Filing Date 2024-04-02
Owner Ginkgo Bioworks, Inc. ()
NICE Classes  ?
  • 42 - Scientific, technological and industrial services, research and design
  • 44 - Medical, veterinary, hygienic and cosmetic services; agriculture, horticulture and forestry services
  • 45 - Legal and security services; personal services for individuals.

Goods & Services

Monitoring and testing of water, air, soil, surfaces, and human and animal reservoirs for viruses, pathogens, and pharmaceutical and drug contaminants; detection of viruses, pathogens, and pharmaceutical and drug contaminants in water, air, soil, surfaces, and human and animal reservoirs; scientific and technological services, namely, bio-sample testing services for others in the fields of biosecurity, biosurveillance, bioinformatics, biointelligence, scientific research, and scientific diagnostics; scientific and technological services, namely, biosecurity surveillance for analyzing food, water, air, and environmental resource safety; consulting services for others in the field of design, planning, and implementation project management of biosecurity initiatives related to the monitoring, testing, and detection of viruses, pathogens, and pharmaceutical and drug contaminants in water, air, soil, surfaces, and human and animal reservoirs; scientific laboratory services; scientific and technological research and development in the fields of biosecurity, biosurveillance, bioinformatics, and biointelligence; providing scientific and technological information in the fields of biosecurity, biosurveillance, bioinformatics, and biointelligence; scientific and technological services, namely, data collection and analysis in the fields of biosecurity, biosurveillance, bioinformatics, and biointelligence. Medical consulting in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence; providing medical information in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence; all of the foregoing services based on information collected from bio-sample monitoring and testing of water, air, soil, surfaces, and human and animal reservoirs. Surveillance services, namely, surveillance of premises for viruses, pathogens, and pharmaceutical and drug contaminants.

49.

HORIZON

      
Serial Number 98480438
Status Pending
Filing Date 2024-04-02
Owner Ginkgo Bioworks, Inc. ()
NICE Classes  ?
  • 09 - Scientific and electric apparatus and instruments
  • 41 - Education, entertainment, sporting and cultural services
  • 42 - Scientific, technological and industrial services, research and design
  • 44 - Medical, veterinary, hygienic and cosmetic services; agriculture, horticulture and forestry services

Goods & Services

Downloadable electronic publications in the nature of reports, white papers, and articles in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence. Providing online non-downloadable publications in the nature of reports, white papers, and articles in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence. Providing online non-downloadable software for viewing reports and delivering, accessing, sharing, analyzing, and visualizing data in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence; scientific and technological services, namely, data collection, analysis, and reporting in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence; providing scientific and technological information in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence. Medical consulting in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence; providing medical information in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence; all of the foregoing services based on information collected from bio-sample monitoring and testing of water, air, soil, surfaces, and human and animal reservoirs.

50.

GINKGO HORIZON

      
Serial Number 98480442
Status Pending
Filing Date 2024-04-02
Owner Ginkgo Bioworks, Inc. ()
NICE Classes  ?
  • 09 - Scientific and electric apparatus and instruments
  • 41 - Education, entertainment, sporting and cultural services
  • 42 - Scientific, technological and industrial services, research and design
  • 44 - Medical, veterinary, hygienic and cosmetic services; agriculture, horticulture and forestry services

Goods & Services

Downloadable electronic publications in the nature of reports, white papers, and articles in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence. Providing online non-downloadable publications in the nature of reports, white papers, and articles in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence. Providing online non-downloadable software for viewing reports and delivering, accessing, sharing, analyzing, and visualizing data in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence; scientific and technological services, namely, data collection, analysis, and reporting in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence; providing scientific and technological information in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence. Medical consulting in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence; providing medical information in the fields of viruses, pathogens, pharmaceutical and drug contaminants, diagnostic testing, pandemic response, biosecurity, biosurveillance, bioinformatics, and biointelligence; all of the foregoing services based on information collected from bio-sample monitoring and testing of water, air, soil, surfaces, and human and animal reservoirs.

51.

RECOMBINANT BACTERIA ENGINEERED TO TREAT DISEASES ASSOCIATED WITH METHIONINE METABOLISM AND METHODS OF USE THEREOF

      
Application Number 18524651
Status Pending
Filing Date 2023-11-30
First Publication Date 2024-03-28
Owner
  • Synlogic Operating Company, Inc. (USA)
  • Ginkgo Bioworks, Inc. (USA)
Inventor
  • Carlin, Dylan Alexander
  • Isabella, Vincent M.
  • Mcmurry, Jonathan
  • Moore, Iii, Theodore Carlton
  • Perreault, Mylene
  • Schmidt, Nathan
  • Simon, Mark

Abstract

The present disclosure provides host cells, e.g., bacterial cells, that comprise a methionine decarboxylase enzyme for the treatment of diseases and disorders associated with methionine metabolism in a subject. The disclosure further provides pharmaceutical compositions and methods of treating disorders associated with methionine metabolism, such as homocystinuria.

IPC Classes  ?

52.

METHODS AND COMPOSITIONS FOR REDUCING INDEX HOPPING

      
Application Number 18018401
Status Pending
Filing Date 2021-07-30
First Publication Date 2024-03-21
Owner Ginkgo Bioworks, Inc. (USA)
Inventor
  • Robison, Keith
  • Smith, Douglas G.
  • Meyer, Adam J.
  • Mitchell, Andrew J.
  • Plocik, Alex
  • Knight, Thomas F.

Abstract

The present disclosure relates to compositions and methods for reducing the concentration of extendable free and buried primers relative to amplification product in a sample. The disclosed methods and compositions can be used to reduce or eliminate index hopping in a next generation sequencing (NGS) platform.

IPC Classes  ?

53.

BIOSYNTHESIS OF OXYGENATED HYDROCARBONS

      
Application Number US2023073892
Publication Number 2024/059517
Status In Force
Filing Date 2023-09-11
Publication Date 2024-03-21
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Brevnova, Elena
  • Da Costa, Bernardo, Moura Torres
  • Haranahalli, Krupanandan
  • Rodriguez, Gabriel
  • Torrens-Spence, Michael
  • Vento, Justin

Abstract

Described herein are CB5 polypeptides for the biosynthesis of oxygenated hydrocarbons in modified host cells.

IPC Classes  ?

  • C12N 15/81 - Vectors or expression systems specially adapted for eukaryotic hosts for fungi for yeasts
  • C07D 401/06 - Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings linked by a carbon chain containing only aliphatic carbon atoms
  • C07D 471/14 - Ortho-condensed systems
  • C07K 14/80 - Cytochromes
  • C12P 7/42 - Hydroxy carboxylic acids
  • C12P 17/12 - Nitrogen as only ring hetero atom containing a six-membered hetero ring
  • C12P 17/18 - Preparation of heterocyclic carbon compounds with only O, N, S, Se, or Te as ring hetero atoms containing at least two hetero rings condensed among themselves or condensed with a common carbocyclic ring system, e.g. rifamycin
  • C12P 19/60 - Preparation of O-glycosides, e.g. glucosides having an oxygen of the saccharide radical directly bound to a non-saccharide heterocyclic ring or a condensed ring system containing a non-saccharide heterocyclic ring, e.g. coumermycin, novobiocin
  • C12P 23/00 - Preparation of compounds containing a cyclohexene ring having an unsaturated side chain containing at least ten carbon atoms bound by conjugated double bonds, e.g. carotenes
  • C12P 33/08 - Hydroxylating at 11 position
  • C12P 33/20 - Preparation of steroids containing heterocyclic rings
  • C12R 1/645 - Fungi
  • C12R 1/865 - Saccharomyces cerevisiae

54.

PRODUCTION OF PROTEINS, INCLUDING SECRETED PROTEINS

      
Application Number US2023074066
Publication Number 2024/059632
Status In Force
Filing Date 2023-09-13
Publication Date 2024-03-21
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Agarwala, Sudeep
  • Chawla, Ruchita, Anil
  • Berman, Aaron, Zev
  • Dev, Ishaan, Joshan
  • Irwin, Brett, Philip
  • Marella, Roy
  • Meier, Elizabeth, Lauren
  • Nowack, Cameron
  • Schmidt, Nathan, W.
  • Srikrishnan, Sneha

Abstract

This disclosure provides expression systems comprising secretion signals that promote production and/or secretion of proteins of interest, as well as one or more polynucleotides encoding chaperone proteins (e.g., CRT and/or PDIA3) which, as demonstrate herein, enhance production and/or secretion of proteins. Moreover, genetically modified host cells comprising these expression systems are capable of producing high levels of protein of interest, such as bovine lactoferrin (bLF), bovine lactoglobulin (bLG), or ovalbumin (Ova).

IPC Classes  ?

  • C12N 15/62 - DNA sequences coding for fusion proteins
  • C07K 14/395 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from fungi from yeasts from Saccharomyces
  • C07K 14/47 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from animalsPeptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from humans from vertebrates from mammals
  • C07K 14/77 - Ovalbumin
  • C07K 14/79 - Transferrins, e.g. lactoferrins, ovotransferrins
  • C12N 9/10 - Transferases (2.)
  • C12N 15/81 - Vectors or expression systems specially adapted for eukaryotic hosts for fungi for yeasts
  • C12R 1/685 - Aspergillus niger
  • C12R 1/84 - Pichia

55.

HETEROLOGOUS PRODUCTION OF 10-METHYLSTEARIC ACID

      
Application Number 18227147
Status Pending
Filing Date 2023-07-27
First Publication Date 2024-03-14
Owner Ginkgo Bioworks, Inc. (USA)
Inventor
  • Shaw, Arthur J.
  • Blitzblau, Hannah
  • Crabtree, Donald V.

Abstract

Nucleic acids and cells comprising a methyltransferase gene and/or a reductase gene are disclosed. These nucleic acids and cells may be used to produce branched (methyl)lipids, such as 10-methylstearate.

IPC Classes  ?

  • C12P 7/6409 - Fatty acids
  • A23D 9/02 - Other edible oils or fats, e.g. shortenings or cooking oils characterised by the production or working-up
  • C11B 1/10 - Production of fats or fatty oils from raw materials by extracting
  • C11C 3/00 - Fats, oils or fatty acids obtained by chemical modification of fats, oils or fatty acids, e.g. by ozonolysis
  • C12N 9/02 - Oxidoreductases (1.), e.g. luciferase
  • C12N 9/10 - Transferases (2.)
  • C12Q 1/686 - Polymerase chain reaction [PCR]

56.

Recombinant adeno-associated virus vectors

      
Application Number 18372334
Grant Number 11981914
Status In Force
Filing Date 2023-09-25
First Publication Date 2024-02-29
Grant Date 2024-05-14
Owner Ginkgo Bioworks, Inc. (USA)
Inventor
  • Mccoy, Daniel
  • Berry, Garrett E.

Abstract

AAV capsid proteins comprising a modification in the amino acid sequence and virus vectors comprising the modified AAV capsid protein are described. Also described are methods of administering the virus vectors and virus capsids to a cell or to a subject in vivo.

IPC Classes  ?

  • C12N 15/864 - Parvoviral vectors
  • A61K 48/00 - Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseasesGene therapy
  • C07K 14/005 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from viruses
  • C12N 7/00 - Viruses, e.g. bacteriophagesCompositions thereofPreparation or purification thereof
  • C12N 9/22 - Ribonucleases
  • C12N 15/11 - DNA or RNA fragmentsModified forms thereof
  • C12N 15/86 - Viral vectors

57.

Antibody-evading virus vectors

      
Application Number 18372823
Grant Number 12060390
Status In Force
Filing Date 2023-09-26
First Publication Date 2024-02-22
Grant Date 2024-08-13
Owner Ginkgo Bioworks, Inc. (USA)
Inventor
  • Mccoy, Daniel
  • Berry, Garrett E.
  • Smith, James Kennon

Abstract

The present disclosure provides AAV capsid proteins comprising a modification in the amino acid sequence and virus vectors comprising the modified AAV capsid protein. The disclosure also provides methods of administering the virus vectors and virus capsids of the disclosure to a cell or to a subject in vivo.

IPC Classes  ?

  • C07K 14/005 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from viruses
  • C07K 14/015 - Parvoviridae, e.g. feline panleukopenia virus, human parvovirus
  • C07K 14/47 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from animalsPeptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from humans from vertebrates from mammals
  • C12N 7/00 - Viruses, e.g. bacteriophagesCompositions thereofPreparation or purification thereof
  • C12N 9/22 - Ribonucleases
  • C12N 15/11 - DNA or RNA fragmentsModified forms thereof
  • C12N 15/86 - Viral vectors
  • A61K 38/00 - Medicinal preparations containing peptides

58.

Antibody-evading virus vectors

      
Application Number 18372833
Grant Number 11976096
Status In Force
Filing Date 2023-09-26
First Publication Date 2024-02-15
Grant Date 2024-05-07
Owner Ginkgo Bioworks, Inc. (USA)
Inventor
  • Mccoy, Daniel
  • Berry, Garrett E.

Abstract

The present disclosure provides recombinant AAV capsid proteins comprising a modification in the amino acid sequence and virus vectors comprising the recombinant AAV capsid proteins. The disclosure also provides methods of administering the virus vectors and vims capsids of the disclosure to a cell or to a subject in vivo.

IPC Classes  ?

  • C07K 14/005 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from viruses
  • A61K 31/7088 - Compounds having three or more nucleosides or nucleotides
  • A61K 38/46 - Hydrolases (3)
  • A61K 48/00 - Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseasesGene therapy
  • A61P 1/16 - Drugs for disorders of the alimentary tract or the digestive system for liver or gallbladder disorders, e.g. hepatoprotective agents, cholagogues, litholytics
  • C12N 7/00 - Viruses, e.g. bacteriophagesCompositions thereofPreparation or purification thereof
  • C12N 15/86 - Viral vectors

59.

BIOSYNTHESIS OF CANNABINOIDS AND CANNABINOID PRECURSORS

      
Application Number 18015046
Status Pending
Filing Date 2021-07-08
First Publication Date 2024-01-25
Owner Ginkgo Bioworks, Inc. (USA)
Inventor
  • Anderson, Kim Cecelia
  • Boucher, Jeffrey Ian
  • Brevnova, Elena
  • Carvalho, Brian
  • Flores, Nicholas
  • Forrest, Katrina
  • Qu, Fiona
  • Rodrigues, Gabriel
  • Spencer, Michelle

Abstract

Aspects of the disclosure relate to biosynthesis of cannabinoids and cannabinoid precursors in recombinant cells and in vitro, and to variant terminal synthases having altered catalytic activity to synthesize THC-type, CBD-type and/or CBC-type cannabinoids.

IPC Classes  ?

  • C12P 7/42 - Hydroxy carboxylic acids
  • C12P 7/22 - Preparation of oxygen-containing organic compounds containing a hydroxy group aromatic
  • C12N 15/81 - Vectors or expression systems specially adapted for eukaryotic hosts for fungi for yeasts

60.

OLEIC ACID PRODUCTION IN YEAST

      
Application Number 18138472
Status Pending
Filing Date 2023-04-24
First Publication Date 2024-01-25
Owner Ginkgo Bioworks, Inc. (USA)
Inventor
  • Tsakraklides, Vasiliki
  • Brevnova, Elena E.
  • Friedlander, Jonathan
  • Kamineni, Annapurna
  • Shaw, Iv, Arthur J.

Abstract

Disclosed are transformed cells comprising one or more genetic modifications that affect the lipid content of the cell, e.g., by increasing the concentration of oleic acid in the cell relative to an unmodified cell of the same type. Also disclosed are methods for modifying the lipid content of a cell by increasing the activity of one or more proteins in the cell and/or by decreasing the activity of one or more proteins in the same cell.

IPC Classes  ?

  • C12P 7/6463 - Glycerides obtained from glyceride producing microorganisms, e.g. single cell oil
  • C12N 9/10 - Transferases (2.)
  • C12N 15/80 - Vectors or expression systems specially adapted for eukaryotic hosts for fungi
  • C12N 1/16 - YeastsCulture media therefor

61.

SYNTHETIC METHANOL INDUCIBLE PROMOTERS AND USES THEREOF

      
Application Number 18037215
Status Pending
Filing Date 2021-11-12
First Publication Date 2024-01-04
Owner Ginkgo Bioworks, Inc. (USA)
Inventor
  • Srinivas, Swaminath
  • Gardin, Justin Michael

Abstract

This application describes synthetic promoters capable of facilitating the high-yield synthesis of proteins and molecules.

IPC Classes  ?

  • C12N 15/113 - Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides
  • C12P 21/02 - Preparation of peptides or proteins having a known sequence of two or more amino acids, e.g. glutathione

62.

IMPROVED HOST CELLS

      
Application Number US2023069343
Publication Number 2024/006888
Status In Force
Filing Date 2023-06-29
Publication Date 2024-01-04
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Srinivas, Swaminath
  • Piechura, Joseph
  • Irwin, Brett, Philip
  • Dipiazza, Amber, Rae Cutter
  • Becker, Diveena

Abstract

Aspects of the disclosure relate to genetic modifications which increase heterologous protein production in a host cell, such as a methylotrophic yeast host cell, such as Pichia pastoris. Such genetic modifications may comprise, in some embodiments, one or more genetic modifications that result in (a) the expression of a mutant heat shock transcription factor 1 (HSF1); and/or (b) the downregulation of one or more genes SSY1, HSL1, PAS_chr2-l_0053, PAS_chr2-l_0404, PAS_chr4_0550, PAS_chrl-3_0135, and/or PAS_chrl-3_0285.

IPC Classes  ?

  • C12N 15/81 - Vectors or expression systems specially adapted for eukaryotic hosts for fungi for yeasts
  • C07K 14/805 - HaemoglobinsMyoglobins
  • C12P 21/02 - Preparation of peptides or proteins having a known sequence of two or more amino acids, e.g. glutathione
  • C12R 1/84 - Pichia

63.

COMPOSITIONS AND METHODS FOR HIGH FIDELITY ASSEMBLY OF NUCLEIC ACIDS

      
Application Number 18324339
Status Pending
Filing Date 2023-05-26
First Publication Date 2023-12-21
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Jacobson, Joseph
  • Schindler, Daniel
  • Lawton, Scott S.

Abstract

Aspects of the invention relate to methods, compositions and algorithms for designing and producing a target nucleic acid. The method can include: (1) providing a plurality of blunt-end double-stranded nucleic acid fragments having a restriction enzyme recognition sequence at both ends thereof; (2) producing via enzymatic digestion a plurality of cohesive-end double-stranded nucleic acid fragments each having two different and non-complementary overhangs; (3) ligating the plurality of cohesive-end double-stranded nucleic acid fragments with a ligase; and (4) forming a linear arrangement of the plurality of cohesive-end double-stranded nucleic acid fragments, wherein the unique arrangement comprises the target nucleic acid. In certain embodiments, the plurality of blunt-end double-stranded nucleic acid fragments can be provided by: releasing a plurality of oligonucleotides synthesized on a solid support; and synthesizing complementary strands of the plurality of oligonucleotides using a polymerase based reaction.

IPC Classes  ?

  • C12N 15/66 - General methods for inserting a gene into a vector to form a recombinant vector using cleavage and ligationUse of non-functional linkers or adaptors, e.g. linkers containing the sequence for a restriction endonuclease
  • C12N 15/10 - Processes for the isolation, preparation or purification of DNA or RNA
  • C12P 19/34 - Polynucleotides, e.g. nucleic acids, oligoribonucleotides
  • G16B 30/00 - ICT specially adapted for sequence analysis involving nucleotides or amino acids
  • G16B 30/20 - Sequence assembly

64.

ENGINEERED PHENYLALANINE AMMONIA LYASE AND TYROSINE AMMONIA LYASE ENZYMES FOR PRODUCING AROMATIC COMPOUNDS

      
Application Number US2023067497
Publication Number 2023/230574
Status In Force
Filing Date 2023-05-25
Publication Date 2023-11-30
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Parachin, Nadia
  • Praveschotinunt, Pichet
  • Schmidt, Nathan, W.

Abstract

Aspects of the disclosure relate to aromatic amino acid ammonia lyases (ALs), phenylalanine ammonia lyases (PALs), and tyrosine ammonia lyase (TALs), including engineered enzymes, and their use in catalyzing chemical reactions.

IPC Classes  ?

  • C12N 9/88 - Lyases (4.)
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli

65.

METHODS AND SYSTEMS FOR CHEMOAUTOTROPHIC PRODUCTION OF ORGANIC COMPOUNDS

      
Application Number 18326495
Status Pending
Filing Date 2023-05-31
First Publication Date 2023-11-30
Owner Ginkgo Bioworks, Inc. (USA)
Inventor
  • Fischer, Curt R.
  • Che, Austin J.
  • Shetty, Reshma P.
  • Kelly, Jason R.

Abstract

The present disclosure identifies pathways, mechanisms, systems and methods to confer chemoautotrophic production of carbon-based products of interest, such as sugars, alcohols, chemicals, amino acids, polymers, fatty acids and their derivatives, hydrocarbons, isoprenoids, and intermediates thereof, in organisms such that these organisms efficiently convert inorganic carbon to organic carbon-based products of interest using inorganic energy, such as formate, and in particular the use of organisms for the commercial production of various carbon-based products of interest.

IPC Classes  ?

  • C12P 7/40 - Preparation of oxygen-containing organic compounds containing a carboxyl group
  • C12P 5/00 - Preparation of hydrocarbons
  • C12P 7/00 - Preparation of oxygen-containing organic compounds
  • C12P 7/16 - Butanols
  • C12N 9/04 - Oxidoreductases (1.), e.g. luciferase acting on CHOH groups as donors, e.g. glucose oxidase, lactate dehydrogenase (1.1)
  • C12N 9/02 - Oxidoreductases (1.), e.g. luciferase
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli

66.

MIXER-TAILED FILTRATION MICROFLUIDIC CHIP

      
Application Number US2023022558
Publication Number 2023/225100
Status In Force
Filing Date 2023-05-17
Publication Date 2023-11-23
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Song, Suk-Heung
  • Bordonali, Lorenzo
  • Ryan, Herbert B.
  • Höfflin, Jens P.

Abstract

A microfluidic chip comprising: a first port; a first microchannel having a first end connected to the first port and having a first portion with a spiral path around the first port; a membrane; and a second microchannel having a spiral portion adjacent to the first portion of the first microchannel and separated from the first microchannel by the membrane.

IPC Classes  ?

  • B01L 3/00 - Containers or dishes for laboratory use, e.g. laboratory glasswareDroppers

67.

METHODS AND COMPOSITIONS INVOLVING PROMOTERS DERIVED FROM YARROWIA LIPOLYTICA

      
Application Number 18146661
Status Pending
Filing Date 2022-12-27
First Publication Date 2023-11-09
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Tsakraklides, Vasiliki
  • Kamineni, Annapurna

Abstract

The current methods and compositions provide for nucleotide sequences of promoters from Yarrowia lipolytica which may be used to drive gene expression in a cell. In some aspects, the promoters are useful for modulating lipid production in oleaginous organisms such as yeast.

IPC Classes  ?

  • C12N 9/02 - Oxidoreductases (1.), e.g. luciferase
  • C12P 7/64 - FatsFatty oilsEster-type waxesHigher fatty acids, i.e. having at least seven carbon atoms in an unbroken chain bound to a carboxyl groupOxidised oils or fats
  • C12N 15/81 - Vectors or expression systems specially adapted for eukaryotic hosts for fungi for yeasts

68.

BIOSYNTHESIS OF CANNABINOIDS AND CANNABINOID PRECURSORS

      
Application Number US2023066115
Publication Number 2023/212519
Status In Force
Filing Date 2023-04-24
Publication Date 2023-11-02
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Carvalho, Brian
  • Ritter, Seth
  • Wrenbeck, Emily, E.

Abstract

Aspects of the disclosure relate to biosynthesis of cannabinoids and cannabinoid precursors in recombinant cells and in vitro. Described are host cells comprising heterologous polynucleotides encoding polyketide synthase (PKS) variants that are capable of producing more divarinol in the presence of butyrate.

IPC Classes  ?

  • C12N 9/10 - Transferases (2.)
  • C12N 15/81 - Vectors or expression systems specially adapted for eukaryotic hosts for fungi for yeasts

69.

BIOSYNTHESIS OF CANNABINOIDS AND CANNABINOID PRECURSORS

      
Application Number 18010666
Status Pending
Filing Date 2021-06-17
First Publication Date 2023-10-26
Owner Ginkgo Bioworks, Inc. (USA)
Inventor
  • Anderson, Kim Cecelia
  • Carvalho, Brian
  • Flores, Nicholas
  • Ritter, Seth
  • Rodriguez, Gabriel
  • Spencer, Michelle
  • Wrenbeck, Emily E.

Abstract

Aspects of the disclosure relate to biosynthesis of cannabinoids and cannabinoid precursors in recombinant cells and in vitro. In particular, the disclosure relates to variants of olivetolic acid cyclase.

IPC Classes  ?

70.

VARIANT SARS-CoV-2 PROTEINS AND USES THEREOF

      
Application Number 17923327
Status Pending
Filing Date 2021-05-05
First Publication Date 2023-09-28
Owner Ginkgo Bioworks, Inc. (USA)
Inventor
  • Hecht, Ariel H.
  • Ritter, Seth C.
  • Wrenbeck, Emily E.

Abstract

The present disclosure relates to variants of SARS-CoV-2 nucleocapsid protein, spike protein, and spike protein receptor binding domain (RBD), as well as nucleic acids encoding such variants and methods of use thereof. Such variants are useful in diagnostic test kits and vaccines for SARS-CoV-2.

IPC Classes  ?

  • A61K 39/215 - Coronaviridae, e.g. avian infectious bronchitis virus
  • C07K 14/005 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from viruses
  • A61P 31/14 - Antivirals for RNA viruses
  • C12N 15/86 - Viral vectors
  • G01N 33/569 - ImmunoassayBiospecific binding assayMaterials therefor for microorganisms, e.g. protozoa, bacteria, viruses

71.

BIOSYNTHESIS OF CANNABINOIDS AND CANNABINOID PRECURSORS

      
Application Number US2023064834
Publication Number 2023/183857
Status In Force
Filing Date 2023-03-22
Publication Date 2023-09-28
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Brevnova, Elena
  • Carlin, Dylan, Alexander
  • Carvalho, Brian
  • Rodriguez, Gabriel

Abstract

Aspects of the disclosure relate to biosynthesis of cannabinoids and cannabinoid precursors in recombinant cells and in vitro.

IPC Classes  ?

  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes
  • C12N 9/02 - Oxidoreductases (1.), e.g. luciferase
  • C12N 9/10 - Transferases (2.)
  • C12N 9/88 - Lyases (4.)
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 15/81 - Vectors or expression systems specially adapted for eukaryotic hosts for fungi for yeasts

72.

BIOSYNTHESIS OF ABSCISIC ACID AND ABSCISIC ACID PRECURSORS

      
Application Number US2023064106
Publication Number 2023/173066
Status In Force
Filing Date 2023-03-10
Publication Date 2023-09-14
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Bober, Josef
  • Cao, Yangxiaolu
  • Formighieri, Cinzia
  • Tsakraklides, Vasiliki

Abstract

Described in this application are proteins and host cells involved in methods of producing absisic acid (ABA) precursors and/or ABA.

IPC Classes  ?

  • C12N 15/81 - Vectors or expression systems specially adapted for eukaryotic hosts for fungi for yeasts
  • A61K 31/19 - Carboxylic acids, e.g. valproic acid
  • C07C 51/373 - Preparation of carboxylic acids or their salts, halides, or anhydrides by reactions not involving formation of carboxyl groups by introduction of functional groups containing oxygen only in doubly bound form
  • C07C 59/90 - Unsaturated compounds containing keto groups containing singly bound oxygen-containing groups
  • C12N 15/52 - Genes encoding for enzymes or proenzymes

73.

GENE THERAPY FOR ARRHYTHMOGENIC CARDIOMYOPATHY

      
Application Number US2023062834
Publication Number 2023/159190
Status In Force
Filing Date 2023-02-17
Publication Date 2023-08-24
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Graef, John
  • Sun, Chicheng

Abstract

The disclosure provides nucleic acids (comprising AAV expression cassettes), AAV vectors, and compositions for use in methods for treating and/or delaying the onset of diseases associated with mutations in genes, such as PKP2, associated with arrhythmogenic cardiomyopathy. Also, provided herein are methods for treating and/or delaying the onset of arrhythmogenic cardiomyopathy.

IPC Classes  ?

  • C12N 15/86 - Viral vectors
  • A61K 48/00 - Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseasesGene therapy

74.

SYNTHETIC EXPRESSION SYSTEMS

      
Application Number 18024706
Status Pending
Filing Date 2021-09-05
First Publication Date 2023-08-17
Owner Ginkgo Bioworks, Inc. (USA)
Inventor
  • Reppas, Nikos
  • Srinivas, Swaminath
  • Meyer, Adam
  • Tucker, Alex
  • Manga, Punita
  • Srikrishnan, Sneha

Abstract

This application describes transcriptional units, synthetic expression systems, and host cells comprising transcriptional units and synthetic expression systems, wherein the synthetic expression system is capable of expressing a gene of interest. Also described are methods for the production of bioproducts (including, but not limited to, proteins or RNA expressed from the gene of interest). In some embodiments, bioproducts are produced from host cells under culture conditions without addition of methanol.

IPC Classes  ?

  • C12P 21/02 - Preparation of peptides or proteins having a known sequence of two or more amino acids, e.g. glutathione
  • C12N 15/63 - Introduction of foreign genetic material using vectorsVectorsUse of hosts thereforRegulation of expression
  • C12N 15/81 - Vectors or expression systems specially adapted for eukaryotic hosts for fungi for yeasts
  • C12N 9/26 - Hydrolases (3.) acting on glycosyl compounds (3.2) acting on alpha-1, 4-glucosidic bonds, e.g. hyaluronidase, invertase, amylase
  • C12N 9/10 - Transferases (2.)
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C07K 14/795 - Porphyrin- or corrin-ring-containing peptides
  • C07K 14/77 - Ovalbumin

75.

RECOMBINANT ADENO-ASSOCIATED VIRUS VECTORS, AND METHODS OF USE THEREOF

      
Application Number US2023061950
Publication Number 2023/150687
Status In Force
Filing Date 2023-02-03
Publication Date 2023-08-10
Owner GINKGO BIOWORKS, INC. (USA)
Inventor Castellanos, Ruth

Abstract

in vivoin vivo.

IPC Classes  ?

  • C07K 14/015 - Parvoviridae, e.g. feline panleukopenia virus, human parvovirus
  • C12N 15/864 - Parvoviral vectors

76.

CRISPR-CAS12A DIRECTED RANDOM MUTAGENESIS AGENTS AND METHODS

      
Application Number 18009900
Status Pending
Filing Date 2021-06-09
First Publication Date 2023-07-27
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Knyphausen, Philipp
  • Vogler, Brian
  • Coco, Wayne
  • Cohnen, Andre
  • Richter, Florian
  • Curtis, Damian

Abstract

Disclosed are new nucleic acid base-editing systems comprising fusion proteins comprising a) an RNA-programmable nucleic acid recognition module or other suitable nucleic acid recognition module, b) a light inducible reactive oxygen generator. Further disclosed are methods and kits to modify or mutagenize a target DNA region in prokaryotic or eukaryotic cells or organisms.

IPC Classes  ?

  • C12N 15/10 - Processes for the isolation, preparation or purification of DNA or RNA

77.

SKIN COMMENSAL BACTERIA ENGINEERED TO PRODUCE ANTHRANILATE OR DERIVATIVES THEREOF

      
Application Number US2023060205
Publication Number 2023/133484
Status In Force
Filing Date 2023-01-06
Publication Date 2023-07-13
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Baldera Aguayo, Pedro, Alexis
  • Chatzivasileiou, Alkiviadis, Orfefs
  • Formighieri, Cinzia
  • King, Jason

Abstract

Aspects of the disclosure relate to modified skin commensal bacterial host cells capable of producing anthranilate or derivatives thereof.

IPC Classes  ?

  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 1/20 - BacteriaCulture media therefor
  • C12N 9/10 - Transferases (2.)
  • C12N 9/88 - Lyases (4.)
  • C12N 9/90 - Isomerases (5.)
  • C12N 15/74 - Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora
  • C12N 15/77 - Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora for CorynebacteriumVectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora for Brevibacterium
  • C12P 13/00 - Preparation of nitrogen-containing organic compounds
  • C12R 1/15 - Corynebacterium
  • C12R 1/45 - Staphylococcus epidermidis

78.

SKIN COMMENSAL BACTERIA ENGINEERED TO PRODUCE TERPENES

      
Application Number US2023060212
Publication Number 2023/133490
Status In Force
Filing Date 2023-01-06
Publication Date 2023-07-13
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Baldera Aguayo, Pedro, Alexis
  • Chatzivasileiou, Alkiviadis, Orfefs
  • Formighieri, Cinzia

Abstract

Aspects of the disclosure relate to modified skin commensal bacterial host cells capable of producing terpenes.

IPC Classes  ?

  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • A61K 8/99 - Cosmetics or similar toiletry preparations characterised by the composition containing materials, or derivatives thereof, of undetermined constitution from microorganisms other than algae or fungi, e.g. protozoa or bacteria
  • A61Q 13/00 - Formulations or additives for perfume preparations
  • A61Q 15/00 - Anti-perspirants or body deodorants
  • A61Q 17/04 - Topical preparations for affording protection against sunlight or other radiationTopical sun tanning preparations
  • C12N 1/20 - BacteriaCulture media therefor
  • C12N 9/04 - Oxidoreductases (1.), e.g. luciferase acting on CHOH groups as donors, e.g. glucose oxidase, lactate dehydrogenase (1.1)
  • C12N 9/10 - Transferases (2.)
  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 9/16 - Hydrolases (3.) acting on ester bonds (3.1)
  • C12N 9/88 - Lyases (4.)
  • C12N 9/90 - Isomerases (5.)
  • C12N 15/74 - Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora
  • C12N 15/77 - Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora for CorynebacteriumVectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora for Brevibacterium
  • C12P 5/00 - Preparation of hydrocarbons
  • C12P 7/04 - Preparation of oxygen-containing organic compounds containing a hydroxy group acyclic
  • C12P 17/06 - Oxygen as only ring hetero atoms containing a six-membered hetero ring, e.g. fluorescein
  • C12R 1/15 - Corynebacterium
  • C12R 1/45 - Staphylococcus epidermidis

79.

METHODS AND COMPOSITIONS FOR PFAS DEFLUORINATION DETECTION

      
Application Number US2022053594
Publication Number 2023/122143
Status In Force
Filing Date 2022-12-21
Publication Date 2023-06-29
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Dinh, Christina
  • Mcmurry, Jon
  • Shah, Sanjiv
  • Shepherd, Micah

Abstract

Aspects of the disclosure relate to methods of detecting defluorination of a per- or polyfluoroalkyl substance (PFAS).

IPC Classes  ?

  • C12Q 1/44 - Measuring or testing processes involving enzymes, nucleic acids or microorganismsCompositions thereforProcesses of preparing such compositions involving hydrolase involving esterase
  • C12N 9/18 - Carboxylic ester hydrolases
  • G01N 33/18 - Water

80.

BIOSYNTHESIS OF MOGROSIDES

      
Application Number 17924659
Status Pending
Filing Date 2021-05-13
First Publication Date 2023-06-08
Owner Ginkgo Bioworks, Inc. (USA)
Inventor
  • Boucher, Jeffrey Ian
  • Gardin, Justin Michael
  • Marr, Scott
  • Mcmahon, Matthew
  • Patel, Krishnaben S.
  • Zhu, Jie

Abstract

Described in this application are UDP-glycosyltransferases (UGT) enzymes, host cells expressing the UGTs, and methods of producing mogrol precursors, mogrol, and/or mogrosides using such host cells.

IPC Classes  ?

  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 15/81 - Vectors or expression systems specially adapted for eukaryotic hosts for fungi for yeasts
  • C12P 19/56 - Preparation of O-glycosides, e.g. glucosides having an oxygen atom of the saccharide radical directly bound to a condensed ring system having three or more carbocyclic rings, e.g. daunomycin, adriamycin
  • C12P 33/02 - DehydrogenatingDehydroxylating

81.

ENGINEERED SESQUITERPENE SYNTHASES

      
Application Number US2022080127
Publication Number 2023/097167
Status In Force
Filing Date 2022-11-18
Publication Date 2023-06-01
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Boucher, Jeffrey, Ian
  • Carlin, Dylan, Alexander
  • Formighieri, Cinzia
  • Greenhagen, Bryan
  • Jensen, Jaide
  • Marr, Scott

Abstract

Provided in this disclosure are engineered sesquiterpene synthases, host cells expressing engineered sesquiterpene synthases and methods for making alpha-guaiene.

IPC Classes  ?

  • C12N 9/88 - Lyases (4.)
  • C07C 13/52 - AzulenesCompletely or partially hydrogenated azulenes
  • C12P 5/00 - Preparation of hydrocarbons
  • C40B 30/08 - Methods of screening libraries by measuring catalytic activity

82.

BIOSYNTHESIS OF CANNABINOIDS AND CANNABINOID PRECURSORS

      
Application Number 17914060
Status Pending
Filing Date 2021-03-26
First Publication Date 2023-05-04
Owner Ginkgo Bioworks, Inc. (USA)
Inventor
  • Anderson, Kim Cecelia
  • Boucher, Jeffrey Lan
  • Brevnova, Elena
  • Carlin, Dylan Alexander
  • Carvalho, Brian
  • Flores, Nicholas
  • Forrest, Katrina
  • Rodriguez, Gabriel
  • Spencer, Michelle

Abstract

Aspects of the disclosure relate to biosynthesis of cannabinoids and cannabinoid precursors in recombinant cells and in vitro.

IPC Classes  ?

  • C07D 311/80 - DibenzopyransHydrogenated dibenzopyrans
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • C12N 15/81 - Vectors or expression systems specially adapted for eukaryotic hosts for fungi for yeasts
  • C07C 65/19 - Compounds having carboxyl groups bound to carbon atoms of six-membered aromatic rings and containing any of the groups OH, O-metal, —CHO, keto, ether, groups, groups, or groups containing hydroxy or O-metal groups having unsaturation outside the aromatic ring
  • C12P 7/42 - Hydroxy carboxylic acids
  • C12P 17/06 - Oxygen as only ring hetero atoms containing a six-membered hetero ring, e.g. fluorescein
  • C12N 9/02 - Oxidoreductases (1.), e.g. luciferase

83.

METHODS AND SYSTEMS FOR METHYLOTROPHIC PRODUCTION OF ORGANIC COMPOUNDS

      
Application Number 17937009
Status Pending
Filing Date 2022-09-30
First Publication Date 2023-04-06
Owner Ginkgo Bioworks, Inc. (USA)
Inventor
  • Shetty, Reshma P.
  • Fischer, Curt R.

Abstract

The present disclosure identifies pathways, mechanisms, systems and methods to confer production of carbon-based products of interest, such as sugars, alcohols, chemicals, amino acids, polymers, fatty acids and their derivatives, hydrocarbons, isoprenoids, and intermediates thereof, in engineered and/or evolved methylotrophs such that these organisms efficiently convert C1 compounds, such as formate, formic acid, formaldehyde or methanol, to organic carbon-based products of interest, and in particular the use of organisms for the commercial production of various carbon-based products of interest.

IPC Classes  ?

  • C12N 15/74 - Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 1/20 - BacteriaCulture media therefor
  • C12N 1/36 - Adaptation or attenuation of cells
  • C12P 7/16 - Butanols
  • C12P 7/40 - Preparation of oxygen-containing organic compounds containing a carboxyl group

84.

BIOSYNTHESIS OF CANNABINOIDS AND CANNABINOID PRECURSORS

      
Application Number US2022077253
Publication Number 2023/056350
Status In Force
Filing Date 2022-09-29
Publication Date 2023-04-06
Owner GINKGO BIOWORKS, INC. (USA)
Inventor Carvalho, Brian

Abstract

in vitro.in vitro.

IPC Classes  ?

  • C12P 17/06 - Oxygen as only ring hetero atoms containing a six-membered hetero ring, e.g. fluorescein
  • C12P 7/22 - Preparation of oxygen-containing organic compounds containing a hydroxy group aromatic
  • C12M 1/40 - Apparatus specially designed for the use of free, immobilised, or carrier-bound enzymes, e.g. apparatus containing a fluidised bed of immobilised enzymes
  • C12N 15/10 - Processes for the isolation, preparation or purification of DNA or RNA
  • C12N 9/10 - Transferases (2.)
  • C12N 9/88 - Lyases (4.)
  • C12Q 1/48 - Measuring or testing processes involving enzymes, nucleic acids or microorganismsCompositions thereforProcesses of preparing such compositions involving transferase
  • C12Q 1/527 - Measuring or testing processes involving enzymes, nucleic acids or microorganismsCompositions thereforProcesses of preparing such compositions involving lyase
  • C12M 1/10 - Apparatus for enzymology or microbiology rotatably mounted
  • C12M 1/02 - Apparatus for enzymology or microbiology with agitation meansApparatus for enzymology or microbiology with heat exchange means

85.

ENGINEERED PHENYLALANINE AMMONIA LYASE ENZYMES

      
Application Number US2022076103
Publication Number 2023/039466
Status In Force
Filing Date 2022-09-08
Publication Date 2023-03-16
Owner
  • GINKGO BIOWORKS, INC. (USA)
  • SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Carlin, Dylan, Alexander
  • Hecht, Ariel
  • Isabella, Vincent
  • Mcmurry, Jon
  • Monahan, Catherine
  • Reppas, Nikos
  • Ridley, Christian
  • Schmidt, Nathan, W.

Abstract

Aspects of the disclosure relate to phenylalanine ammonia lyase (PAL) enzymes, including engineered PAL enzymes, and their use in catalyzing chemical reactions.

IPC Classes  ?

86.

RECOMBINANT CELLS FOR TREATING DISEASES ASSOCIATED WITH URIC ACID AND METHODS OF USE THEREOF

      
Application Number US2022075820
Publication Number 2023/034904
Status In Force
Filing Date 2022-09-01
Publication Date 2023-03-09
Owner
  • SYNLOGIC OPERATING COMPANY, INC. (USA)
  • GINKGO BIOWORKS, INC. (USA)
Inventor
  • Carlin, Dylan Alexander
  • Cotton, Sean
  • Hartsough, Lucas
  • Isabella, Vincent M.
  • Jain, Rishi
  • Moore, Theodore Carlton, Iii
  • Perreault, Mylene
  • Praveschotinunt, Pichet
  • Ritter, Seth
  • Tatli, Mehmet

Abstract

e.g.e.g., a uric acid degrading enzyme, for the treatment of diseases and disorders associated with uric acid, including hyperuricemia and gout, in a subject. The disclosure further provides pharmaceutical compositions and methods of treating disorders associated with uric acid, such as hyperuricemia and gout.

IPC Classes  ?

  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes
  • A61K 38/44 - Oxidoreductases (1)

87.

Recombinant bacteria engineered to treat diseases associated with methionine metabolism and methods of use thereof

      
Application Number 17819086
Grant Number 11859189
Status In Force
Filing Date 2022-08-11
First Publication Date 2023-03-02
Grant Date 2024-01-02
Owner
  • Synlogic Operating Company, Inc. (USA)
  • Ginkgo Bioworks, Inc. (USA)
Inventor
  • Carlin, Dylan Alexander
  • Isabella, Vincent M.
  • Mcmurry, Jonathan
  • Moore, Iii, Theodore Carlton
  • Perreault, Mylene
  • Schmidt, Nathan
  • Simon, Mark

Abstract

The present disclosure provides host cells, e.g., bacterial cells, that comprise a methionine decarboxylase enzyme for the treatment of diseases and disorders associated with methionine metabolism in a subject. The disclosure further provides pharmaceutical compositions and methods of treating disorders associated with methionine metabolism, such as homocystinuria.

IPC Classes  ?

88.

ENHANCED PRODUCTION OF HISTIDINE, PURINE PATHWAY METABOLITES, AND PLASMID DNA

      
Application Number 17785820
Status Pending
Filing Date 2020-12-16
First Publication Date 2023-03-02
Owner Ginkgo Bioworks, Inc. (USA)
Inventor
  • Chatzivasileiou, Alkiviadis Orfefs
  • King, Jason
  • Mak, Huey-Ming
  • Rodriguez, Gabriel
  • Wrenbeck, Emily E.
  • Young, David

Abstract

Aspects of the disclosure relate to biosynthesis of histidine in host cells. For example, host cells may comprise: a promoter; a ribosome binding site (RBS); and a nucleic acid comprising: hisG; hisD; hisC hisB; hisH; hisA; hisF; and/or hisI. Host cells may further comprise a nucleic acid encoding a ribose phosphate pyrophosphokinase (RPPK), optionally comprising one or more amino acid substitutions relative to the sequence of wildtype E. coli RPPK. Host cells of the disclosure may comprise a nucleic acid encoding a 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase (MTHFDC) enzyme. Further aspects of the disclosure relate to production of purine pathway metabolites and/or plasmid DNA in host cells.

IPC Classes  ?

  • C12P 19/34 - Polynucleotides, e.g. nucleic acids, oligoribonucleotides
  • C12N 15/113 - Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides
  • C12P 13/24 - ProlineHydroxyprolineHistidine
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli

89.

RECOMBINANT BACTERIA ENGINEERED TO TREAT DISEASES ASSOCIATED WITH METHIONINE METABOLISM AND METHODS OF USE THEREOF

      
Application Number US2022074826
Publication Number 2023/019198
Status In Force
Filing Date 2022-08-11
Publication Date 2023-02-16
Owner
  • SYNLOGIC OPERATING COMPANY, INC. (USA)
  • GINKGO BIOWORKS, INC. (USA)
Inventor
  • Carlin, Dylan, Alexander
  • Isabella, Vincent, M.
  • Mcmurry, Jonathan
  • Moore, Theodore, Carlton, Iii
  • Perreault, Mylene
  • Ritter, Seth
  • Schmidt, Nathan
  • Simon, Mark

Abstract

The present disclosure provides host cells, e.g., bacterial cells, that comprise a methionine decarboxylase enzyme for the treatment of diseases and disorders associated with methionine metabolism in a subject. The disclosure further provides pharmaceutical compositions and methods of treating disorders associated with methionine metabolism, such as homocystinuria.

IPC Classes  ?

90.

CONCENTRIC

      
Application Number 1711136
Status Registered
Filing Date 2022-12-28
Registration Date 2022-12-28
Owner Ginkgo Bioworks, Inc. (USA)
NICE Classes  ?
  • 42 - Scientific, technological and industrial services, research and design
  • 44 - Medical, veterinary, hygienic and cosmetic services; agriculture, horticulture and forestry services

Goods & Services

Monitoring and testing of water, air, soil, surfaces, and human and animal reservoirs for viruses, pathogens, and contaminants; detection of viruses, pathogens, and contaminants in water, air, soil, surfaces, and human and animal reservoirs; scientific and technological services, namely, bio-sample testing services for others in the fields of biosecurity, bioinformatics, scientific research, and scientific diagnostics; scientific and technological services, namely, biosecurity surveillance for analyzing food, water, air, and environmental resource safety; consulting services for others in the field of design, planning, and implementation project management of biosecurity initiatives related to the monitoring, testing, and detection of viruses, pathogens, and contaminants in water, air, soil, surfaces, and human and animal reservoirs; scientific laboratory services; scientific and technological research and development in the fields of biosecurity and bioinformatics; providing scientific and technological information in the fields of biosecurity and bioinformatics; scientific and technological services, namely, data collection and analysis in the fields of biosecurity and bioinformatics; none of the foregoing being for agricultural and horticultural use, imaging for medical purposes, or photonics. Medical consulting in the fields of viruses, pathogens, diagnostic testing, pandemic response, and biosecurity; providing medical information in the fields of viruses, pathogens, diagnostic testing, pandemic response, biosecurity, and bioinformatics; the foregoing not related to imaging for medical purposes.

91.

CONCENTRIC BY GINKGO

      
Application Number 1711137
Status Registered
Filing Date 2022-12-28
Registration Date 2022-12-28
Owner Ginkgo Bioworks, Inc. (USA)
NICE Classes  ?
  • 42 - Scientific, technological and industrial services, research and design
  • 44 - Medical, veterinary, hygienic and cosmetic services; agriculture, horticulture and forestry services

Goods & Services

Monitoring and testing of water, air, soil, surfaces, and human and animal reservoirs for viruses, pathogens, and contaminants; detection of viruses, pathogens, and contaminants in water, air, soil, surfaces, and human and animal reservoirs; scientific and technological services, namely, bio-sample testing services for others in the fields of biosecurity, bioinformatics, scientific research, and scientific diagnostics; scientific and technological services, namely, biosecurity surveillance for analyzing food, water, air, and environmental resource safety; consulting services for others in the field of design, planning, and implementation project management of biosecurity initiatives related to the monitoring, testing, and detection of viruses, pathogens, and contaminants in water, air, soil, surfaces, and human and animal reservoirs; scientific laboratory services; scientific and technological research and development in the fields of biosecurity and bioinformatics; providing scientific and technological information in the fields of biosecurity and bioinformatics; scientific and technological services, namely, data collection and analysis in the fields of biosecurity and bioinformatics; none of the foregoing being for agricultural and horticultural use, imaging for medical purposes, or photonics. Medical consulting in the fields of viruses, pathogens, diagnostic testing, pandemic response, and biosecurity; providing medical information in the fields of viruses, pathogens, diagnostic testing, pandemic response, biosecurity, and bioinformatics; the foregoing not related to imaging for medical purposes.

92.

CONCENTRIC

      
Application Number 223715800
Status Registered
Filing Date 2022-12-28
Registration Date 2025-07-18
Owner Ginkgo Bioworks, Inc. (USA)
NICE Classes  ?
  • 42 - Scientific, technological and industrial services, research and design
  • 44 - Medical, veterinary, hygienic and cosmetic services; agriculture, horticulture and forestry services

Goods & Services

(1) Monitoring and testing of water, air, soil, surfaces, and human and animal reservoirs for viruses, pathogens, and contaminants; detection of viruses, pathogens, and contaminants in water, air, soil, surfaces, and human and animal reservoirs; scientific and technological services, namely, bio-sample testing services for others in the fields of biosecurity, bioinformatics, scientific research on viruses, pathogens, and contaminants, and scientific diagnostics of viruses, pathogens and contaminants; scientific and technological services, namely, biosecurity surveillance for analyzing food, water, air, and environmental resource safety; consulting services for others in the field of design, planning, and implementation project management of biosecurity initiatives related to the monitoring, testing, and detection of viruses, pathogens, and contaminants in water, air, soil, surfaces, and human and animal reservoirs; scientific laboratory research services in the fields of biosecurity and bioinformatics; scientific and technological research and development in the fields of biosecurity and bioinformatics; providing scientific and technological information in the fields of biosecurity and bioinformatics; scientific and technological services, namely, data collection and analysis in the fields of biosecurity and bioinformatics; none of the foregoing being for agricultural and horticultural use, imaging for medical purposes, or photonics. (2) Medical consulting in the fields of viruses, pathogens, diagnostic testing, pandemic response, and biosecurity; providing medical information in the fields of viruses, pathogens, diagnostic testing, pandemic response, biosecurity, and bioinformatics; the foregoing not related to imaging for medical purposes.

93.

CONCENTRIC BY GINKGO

      
Application Number 223716100
Status Registered
Filing Date 2022-12-28
Registration Date 2025-07-18
Owner Ginkgo Bioworks, Inc. (USA)
NICE Classes  ?
  • 42 - Scientific, technological and industrial services, research and design
  • 44 - Medical, veterinary, hygienic and cosmetic services; agriculture, horticulture and forestry services

Goods & Services

(1) Monitoring and testing of water, air, soil, surfaces, and human and animal reservoirs for viruses, pathogens, and contaminants; detection of viruses, pathogens, and contaminants in water, air, soil, surfaces, and human and animal reservoirs; scientific and technological services, namely, bio-sample testing services for others in the fields of biosecurity, bioinformatics, scientific research on viruses, pathogens, and contaminants, and scientific diagnostics of viruses, pathogens, and contaminants; scientific and technological services, namely, biosecurity surveillance for analyzing food, water, air, and environmental resource safety; consulting services for others in the field of design, planning, and implementation project management of biosecurity initiatives related to the monitoring, testing, and detection of viruses, pathogens, and contaminants in water, air, soil, surfaces, and human and animal reservoirs; scientific laboratory research services in the fields of biosecurity and bioinformatics; scientific and technological research and development in the fields of biosecurity and bioinformatics; providing scientific and technological information in the fields of biosecurity and bioinformatics; scientific and technological services, namely, data collection and analysis in the fields of biosecurity and bioinformatics; none of the foregoing being for agricultural and horticultural use, imaging for medical purposes, or photonics. (2) Medical consulting in the fields of viruses, pathogens, diagnostic testing, pandemic response, and biosecurity; providing medical information in the fields of viruses, pathogens, diagnostic testing, pandemic response, biosecurity, and bioinformatics; the foregoing not related to imaging for medical purposes.

94.

ORGANOPHOSPHORUS NERVE AGENT HYDROLYZING ENZYMES

      
Application Number US2022025011
Publication Number 2022/256087
Status In Force
Filing Date 2022-04-15
Publication Date 2022-12-08
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Borhani, David
  • Carlin, Dylan, Alexander
  • Tucker, Alex

Abstract

Aspects of the disclosure relate to phosphotriesterase (PTE) enzymes and PTE-related (PTER) enzymes and their use in hydrolyzing OPNAs.

IPC Classes  ?

  • C12N 15/67 - General methods for enhancing the expression
  • C12N 9/16 - Hydrolases (3.) acting on ester bonds (3.1)
  • C12Q 1/44 - Measuring or testing processes involving enzymes, nucleic acids or microorganismsCompositions thereforProcesses of preparing such compositions involving hydrolase involving esterase

95.

BIOSYNTHESIS OF MOGROSIDES

      
Application Number 17771146
Status Pending
Filing Date 2020-10-23
First Publication Date 2022-12-01
Owner Ginkgo Bioworks, Inc. (USA)
Inventor
  • Boucher, Jeffrey Ian
  • Mcmahon, Matthew
  • Marr, Scott
  • Zhu, Jie

Abstract

The disclosure relates to enzymes, such as cucurbitadienol synthase (CDS), UDP-glycosyltransferase (UGT), C11 hydroxylase, epoxide hydrolase (EPH), squalene epoxidase (SQE), and/or cytochrome P450 reductase enzymes, recombinant host cells expressing the enzymes, and methods of producing mogrol precursors, mogrol, and/or mogrosides using such recombinant cells.

IPC Classes  ?

  • A23L 27/30 - Artificial sweetening agents
  • C07K 14/415 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from plants
  • C12N 15/62 - DNA sequences coding for fusion proteins
  • C12N 9/02 - Oxidoreductases (1.), e.g. luciferase
  • C12N 9/10 - Transferases (2.)
  • C12N 9/24 - Hydrolases (3.) acting on glycosyl compounds (3.2)
  • C12N 9/90 - Isomerases (5.)

96.

DIACYLGLYCEROL ACYLTRANSFERASE (DGA1) POLYNUCLEOTIDES, AND METHODS OF INCREASING YEAST CELL LIPID PRODUCTION BY OVEREXPRESSION OF HETEROLOGOUS DGA1

      
Application Number 17833453
Status Pending
Filing Date 2022-06-06
First Publication Date 2022-12-01
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Brevnova, Elena E.
  • Shaw, Iv, Arthur J.
  • Greenhagen, Emily H.

Abstract

DGA1 catalyzes the final enzymatic step for converting acyl-CoA and 1,2-diacylglycerol to triacylglycerols (TAG) and CoA in yeast. Disclosed are methods for expression in an oleaginous yeast host of polynucleotide sequences encoding DGA1 from Rhodosporidium toruloides, Lipomyces starkeyi, Aurantiochytrium limacinum, Aspergillus terreus, or Claviceps purpurea. Also described herein are engineered recombinant host cells of Yarrowia lipolytica comprising heterologous DGA1 polynucleotides encoding DGA1 proteins, or functionally active portions thereof, having the capability of producing increased lipid production and possessing the characteristic of enhanced glucose consumption efficiency.

IPC Classes  ?

97.

PRODUCTION OF OLIGOSACCHARIDES

      
Application Number 17763152
Status Pending
Filing Date 2020-09-24
First Publication Date 2022-11-24
Owner Ginkgo Bioworks, Inc. (USA)
Inventor
  • Agarwala, Sudeep
  • Napolitano, Michael G.

Abstract

The disclosure relates to methods and compositions for the production of fructans using sucrose:sucrose 1-fructosyl-transferase (1-SST), fructan:fructan 1-fructosyltransferase (1-FFT), and/or sucrose fructan-6-fructosyltransferase (6-SFT) enzymes.

IPC Classes  ?

  • C12N 15/81 - Vectors or expression systems specially adapted for eukaryotic hosts for fungi for yeasts
  • C12N 9/10 - Transferases (2.)
  • C12P 19/18 - Preparation of compounds containing saccharide radicals produced by the action of a glycosyl transferase, e.g. alpha-, beta- or gamma-cyclodextrins

98.

INTERGENERIC ENDOSPORE DISPLAY PLATFORMS, PRODUCTS AND METHODS

      
Application Number US2022030432
Publication Number 2022/246308
Status In Force
Filing Date 2022-05-21
Publication Date 2022-11-24
Owner GINKGO BIOWORKS, INC. (USA)
Inventor
  • Curtis, Damian
  • Mccann, Ryan
  • Tipton, Kyle

Abstract

BrevibacillusLysinibacillusViridibacillusPaenibacillusBrevibacillusLysinibacillusViridibacillusPaenibacillus Paenibacillus family members, using particular N-terminal targeting sequences and derivatives of the same, and likewise are provided.

IPC Classes  ?

  • A01H 3/00 - Processes for modifying phenotypes
  • C07K 14/195 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from bacteria
  • C12N 1/20 - BacteriaCulture media therefor
  • C12N 15/62 - DNA sequences coding for fusion proteins
  • C12N 15/74 - Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora

99.

OPTIMIZED BACTERIA ENGINEERED TO TREAT DISORDERS INVOLVING THE CATABOLISM OF LEUCINE, ISOLEUCINE, AND/OR VALINE

      
Application Number 17621121
Status Pending
Filing Date 2020-06-19
First Publication Date 2022-11-17
Owner
  • Synlogic Operating Company, Inc. (USA)
  • Ginkgo Bioworks, Inc. (USA)
Inventor
  • Li, Ning
  • Gao, Jian-Rong
  • Morrison, Philippa Jane Reeder
  • Bergeron, Christopher George
  • Carlin, Dylan Alexander
  • Stone, Laura K.
  • Tucker, Alex C.
  • Boyle, Patrick M.

Abstract

The present disclosure provides recombinant bacterial cells that have been engineered with genetic circuitry which allow the recombinant bacterial cells to sense a patients internal environment and respond by turning an engineered metabolic pathway on or off. When turned on, the recombinant bacterial cells complete all of the steps in a metabolic pathway to achieve a therapeutic effect in a host subject. These recombinant bacterial cells are designed to drive therapeutic effects throughout the body of a host from a point of origin of the microbiome. Specifically, the present disclosure provides recombinant bacterial cells comprising a heterologous gene encoding an improved leucine catabolism enzyme with higher activity and/or specificity for leucine over other branched chain amino acids, such as isoleucine or valine. The disclosure further provides pharmaceutical compositions comprising the recombinant bacteria, and methods for treating disorders involving the catabolism of leucine, isoleucine, and/or valine using the pharmaceutical compositions disclosed herein.

IPC Classes  ?

  • A61K 35/747 - Lactobacilli, e.g. L. acidophilus or L. brevis
  • A61K 35/741 - Probiotics
  • A61K 35/745 - Bifidobacteria
  • A61K 35/742 - Spore-forming bacteria, e.g. Bacillus coagulans, Bacillus subtilis, clostridium or Lactobacillus sporogenes
  • A61K 35/744 - Lactic acid bacteria, e.g. enterococci, pediococci, lactococci, streptococci or leuconostocs
  • A61P 13/02 - Drugs for disorders of the urinary system of urine or of the urinary tract, e.g. urine acidifiers
  • C12N 1/20 - BacteriaCulture media therefor
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli

100.

RARE EARTH ELEMENT (REE)-BINDING PROTEINS

      
Application Number 17620654
Status Pending
Filing Date 2020-06-19
First Publication Date 2022-11-03
Owner Ginkgo Bioworks, Inc. (USA)
Inventor
  • Boyle, Patrick
  • Prathuri, Ramya L.
  • Schmidt, Nathan W.
  • Wrenbeck, Emily E.
  • Simon, Mark David

Abstract

Described in this disclosure are rare earth element (REE)-binding proteins (e.g., lanthanide-binding proteins), host cells expressing the REE-binding proteins, and methods of recovering REEs.

IPC Classes  ?

  • C07K 14/47 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from animalsPeptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from humans from vertebrates from mammals
  • C07K 7/08 - Linear peptides containing only normal peptide links having 12 to 20 amino acids
  • C22B 3/18 - Extraction of metal compounds from ores or concentrates by wet processes with the aid of microorganisms or enzymes, e.g. bacteria or algae
  • C22B 59/00 - Obtaining rare earth metals
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